from marshmallow.exceptions import ValidationError
import config
from .db.BingoPostgresAdapter import BingoPostgresAdapter
from .db.models import LibraryMeta, User as Usermodel
from .db.database import db_session
from .common.util import item_to_sdf_chunk, merge_dicts, api_route
from .celery_app import celery
from .validation import LibrarySchema, SearcherSchema, UserSchema
libraries_api = Blueprint('libraries_api', __name__)
if not os.path.exists(config.__dict__['UPLOAD_FOLDER']):
os.makedirs(config.__dict__['UPLOAD_FOLDER'])
libraries_api.indigo = Indigo()
libraries_api.renderer = IndigoRenderer(libraries_api.indigo)
libraries_api.indigo_inchi = IndigoInchi(libraries_api.indigo)
libraries_api.config = config.__dict__
libraries_api.adapter = BingoPostgresAdapter(libraries_api.config,
libraries_api.indigo,
libraries_api.indigo_inchi)
libraries_api.redis = redis.StrictRedis(host='localhost', port=6379, db=0)
libraries_api_app = flask_restful.Api(libraries_api)
libraries_api_logger = logging.getLogger('libraries')
#libraries_api_logger.addHandler(logging.FileHandler('/srv/api/app.log'))
auth = HTTPBasicAuth()
libraries_api_app.route = types.MethodType(api_route, libraries_api_app)
@auth.verify_password
import traceback
import types
from indigo import Indigo
from indigo_renderer import IndigoRenderer
from indigo_inchi import IndigoInchi
from .celery_app import celery
import config
from .common.util import api_route
imago_api = Blueprint('imago', __name__)
imago_api_logger = logging.getLogger('imago')
imago_api.config = config.__dict__
imago_api.indigo = Indigo()
imago_api.renderer = IndigoRenderer(imago_api.indigo)
imago_api.indigo_inchi = IndigoInchi(imago_api.indigo)
imago_api_app = flask_restful.Api(imago_api)
imago_api_app.route = types.MethodType(api_route, imago_api_app)
allowed_types = imago_api.config['ALLOWED_TYPES']
versions = []
with open('/srv/service_version', 'r') as ver:
for line in ver.readlines():
if line.startswith("imago-console-"):
versions.append(re.search('imago-console-(.*)\..*', line).group(1))
@celery.task(bind=True)
def recognize_image(self, args):
