def test_parse_pipelines_mix(self):
"""Checks if parser accepts custom pipeline mixed with fmridenise.pipeline"""
addition = join(dirname(__file__), "custom_pipeline.json")
custom = self.all_pipelines_valid.copy()
custom.add(addition)
paths = parse_pipelines(custom)
self.assertSetEqual(paths, custom)
def test_parse_pipelines_known_pipeline(self):
selected = "pipeline-24HMP_8Phys_SpikeReg_4GS"
selected_path = {(join(self.pipelines_dir, selected) + ".json")}
paths = parse_pipelines([
selected
]) # __main__ always return list of paths/selected pipelines names
self.assertSetEqual(paths, selected_path)
def test_parse_pipelines_known_pipeline(self):
"""Checks if parser accepts pipeline from fmridenoise selected by name"""
selected = "pipeline-24HMP_8Phys_SpikeReg_4GS"
selected_path = {(join(self.pipelines_dir, selected) + ".json")}
paths = parse_pipelines([
selected
]) # __main__ always return list of paths/selected pipelines names
self.assertSetEqual(paths, selected_path)
def test_parse_pipelines_mix(self):
addition = join(dirname(__file__), "custom_pipeline.json")
custom = self.all_pipelines_valid.copy()
custom.add(addition)
paths = parse_pipelines(custom)
self.assertSetEqual(paths, custom)
def test_parse_pipelines_custom(self):
custom = {join(dirname(__file__), "custom_pipeline.json")}
paths = parse_pipelines(custom)
self.assertSetEqual(custom, paths)
def test_parse_pipelines_without_custom_noicaaroma(self):
paths = parse_pipelines("all", False)
self.assertSetEqual(self.noicaaroma_pipelines_valid, paths)
def test_parse_pipelines_without_custom(self):
paths = parse_pipelines("all", True)
self.assertSetEqual(self.all_pipelines_valid, paths)
def test_parse_pipelines_custom(self):
"""Checks if parser accepts only custom pipeline"""
custom = {join(dirname(__file__), "custom_pipeline.json")}
paths = parse_pipelines(custom)
self.assertSetEqual(custom, paths)
def test_parse_pipelines_without_custom(self):
"""Checks if parser accepts all pipelines from fmridenoise.pipeline"""
paths = parse_pipelines("all")
self.assertSetEqual(self.all_pipelines_valid, paths)