def register_page():
form = UserForm()
if session["user_id"]:
flash('logout first', category='primary')
return redirect('/')
if form.validate_on_submit():
username = form.username.data
password = form.password.data
email = form.email.data
first_name = form.first_name.data
last_name = form.last_name.data
new_user = User.register(username, password, email, first_name,
last_name)
db.session.add(new_user)
try:
db.session.commit()
except IntegrityError:
form.username.errors.append('Username taken. Please pick another')
return render_template('register.html', form=form)
session["user_id"] = new_user.username
flash('Account created successfully!', category='success')
return redirect(f'/user/{new_user.username}')
else:
return render_template("register.html", form=form)
def index():
result = None
form = UserForm(request.form)
if request.method == 'POST':
if form.validate_on_submit():
input_ip_address = request.form['input_ip_address']
result = main_func(input_ip_address)
return render_template('find-interface.html', form=form, result=result)
def hello_world():
uform = UserForm()
if uform.validate_on_submit():
name = uform.name.data
password = uform.password.data
phone = uform.phone.data
icon = uform.icon.data
filename = secure_filename(icon.filename)
icon.save(os.path.join(UPLOAD_DIR, filename))
return '提交成功！'
return render_template('user.html', uform=uform)
def boot_form_user():
uform = UserForm()
if uform.validate_on_submit(): # 主要通过其进行校验 校验提交方式以及form的验证
name = uform.name.data
password = uform.password.data
phone = uform.phone.data
print('name:', name, ' password:'******' phone:', phone)
icon = uform.icon.data # FileStorage类型
print(type(icon))
# 构建安全文件名 存入
filename = secure_filename(icon.filename)
icon.save(os.path.join(UPLOAD_DIR, filename))
return '提交成功！'
return render_template('user1.html', uform=uform)
def update_user_info():
if request.method == 'GET':
user = User.query.filter_by(id=current_user.id).first()
form = UserForm(
username=user.username,
nick_name=user.nick_name,
)
return render_template('user_update.html', title='用户信息', form=form)
form = UserForm()
if form.validate_on_submit():
user = User.query.filter_by(id=current_user.id).first()
user.username = form.username.data
user.nick_name = form.nick_name.data
db.session.commit()
flash('update user info')
return redirect(url_for('get_user_info'))
def edit_user(id):
edit_user= User.query.filter_by(id=id).first()
form = UserForm(obj=edit_user)
if form.validate_on_submit():
try:
# Update user
form.populate_obj(edit_user)
db.session.add(edit_user)
db.session.commit()
# User info
flash('Saved successfully', 'success')
return redirect(url_for('users'))
except:
db.session.rollback()
flash('Error update contact.', 'danger')
return render_template(
'edit.html',
form=form)
def user_signup():
"""Create new user and add to database"""
form = UserForm()
if form.validate_on_submit():
try:
user = User.signup(
username=form.username.data,
password=form.password.data,
email=form.email.data
)
db.session.commit()
except IntegrityError:
flash("Username is already taken", 'danger')
return render_template('/user/signup.html', form=form)
login_user(user, remember=True)
return redirect('/')
else:
return render_template('/user/signup.html', form=form)
def register_user():
form = UserForm()
if form.validate_on_submit():
username = form.username.data
password = form.password.data
email = form.email.data
first_name = form.first_name.data
last_name = form.last_name.data
new_user = User.register(username, password, email, first_name, last_name)
db.session.add(new_user)
try:
db.session.commit()
except IntegrityError:
form.username.errors.append('Username taken, Please pick another!!!!')
return render_template('register.html', form=form)
session['username'] = new_user.username
flash('Welcome! Successfully create account!!')
return redirect(f'/users/{username}')
return render_template('register.html', form=form)
def submit():
form = UserForm()
#basepath = os.path.dirname(__file__)
# 收到表單
if request.method == 'POST':
# 抓取時間，格式化後轉成字串
time = datetime.datetime.now()
timeStr = time.strftime('%y%m%d%H%M%S')
# 檢驗表單資料格式、缺失
if form.validate_on_submit():
# 以 email+datetime 作為filename(需唯一)
if request.form.get('email'):
email = str(form.email.data)
else:
email = 'test'
filename = email.replace('.', '') + timeStr
# 處理textarea
if request.form['seqs']:
text = request.form['seqs']
# target = os.path.join(os.getcwd(), '/static/uploads/'+filename)
fo = open('/home/ubuntu/wpSBOOT/static/uploads/'+filename,'w+')
#print("filename :"+filename)
fo.write(text)
fo.close()
elif request.files['file'] :
# 處理file儲存
f = request.files['file']
# filename = secure_filename(f.filename)
f.save(os.path.join(basepath, 'static/uploads', filename))
else :
return redirect(url_for('index'))
# create cmd line
# -i input
cmd_list.append('-i')
cmd_list.append('./static/uploads/'+filename)
# -o output
cmd_list.append('-o')
cmd_list.append(filename)
# -p path
cmd_list.append('-p')
cmd_list.append('./static/UserData/'+filename)
#print(cmd_list)
# 判斷option, aligner selector
opcount = 0
#mafft
if request.form.get('mafft'):
cmd_list.append('-m')
cmd_list.append('mafft')
opcount += 1
#msucle
if request.form.get('muscle'):
cmd_list.append('-m')
cmd_list.append('muscle')
opcount += 1
#clustalw
if request.form.get('clustalw'):
cmd_list.append('-m')
cmd_list.append('clustalw')
opcount += 1
#tcoffee
if request.form.get('t-coffee'):
cmd_list.append('-m')
cmd_list.append('tcoffee')
opcount += 1
# if the number of aligners less than 2 (fatal error)
if opcount < 2:
return redirect(url_for('index'))
# 執行 cmd line
p = subprocess.Popen(cmd_list)
p.communicate()
#session
if email != 'test':
session['mail'] = email.replace('.', '')
session.permanent = True
# Mail
link = url_for('result', fid=filename, _external=True)
msg = Message(
subject='wpSBOOT alignment result',
recipients=[email],
html='Hello,<br>'
'<blockquote>Your alignment has been completed.<br>'
'Please click <a href="{link}">here</a> to view your results.<br><br>'
'If you have question or report problems, do not reply to this message,and write instead to '
'<a href="mailto:[email protected] ">[email protected]</a></blockquote>'
'<br>Cheers,<br>'
'wpSBOOT team'.format(link=link)
)
mail.send(msg)
return redirect(url_for('result', fid=filename))
else:
return redirect(url_for('index'))
