def test_fva_single(self): variability = FVA(ec_core_model, reactions=['R_EX_ac_e']) self.assertTrue(all([lb <= ub if lb is not None and ub is not None else True for lb, ub in variability.values()])) self.assertEqual(1, len(variability))
def testRun(self): model = load_sbml_model(SMALL_TEST_MODEL, kind=GPR_CONSTRAINED) fix_bigg_model(model) variability = FVA(model) self.assertTrue(all([lb <= ub if lb is not None and ub is not None else True for lb, ub in variability.values()]))
def test_fva_full(self): variability = FVA(ec_core_model) self.assertTrue(all([lb <= ub if lb is not None and ub is not None else True for lb, ub in variability.values()])) self.assertEqual(len(ec_core_model.reactions), len(variability))