def testRun(self):
model = load_sbml_model(SMALL_TEST_MODEL, kind=CONSTRAINT_BASED)
fix_bigg_model(model)
write_model_to_file(model, PLAIN_TEXT_COPY)
model_copy = read_model_from_file(PLAIN_TEXT_COPY, kind=CONSTRAINT_BASED)
solution = FBA(model_copy)
self.assertEqual(solution.status, Status.OPTIMAL)
self.assertAlmostEqual(solution.fobj, GROWTH_RATE, places=2)
def testRun(self):
model = load_sbml_model(SMALL_TEST_MODEL, kind=CONSTRAINT_BASED)
write_model_to_file(model, PLAIN_TEXT_COPY)
model_copy = read_model_from_file(PLAIN_TEXT_COPY, kind=CONSTRAINT_BASED)
self.assertListEqual(sorted(model.metabolites.keys()),
sorted(model_copy.metabolites.keys()))
self.assertListEqual(model.reactions.keys(), model_copy.reactions.keys())
self.assertDictEqual(dict(model.stoichiometry),
dict(model_copy.stoichiometry))
self.assertDictEqual(model.bounds, model_copy.bounds)
