def get_classes(rootdir):
classes = []
filedirs = fcfiles.get_filedirs(rootdir)
for filedir in filedirs:
fdict = fcfiles.load_pickle(filedir)
c = fdict['c']
if not c in classes:
classes.append(c)
return classes
def plot_mse(rootdir, model_names,
figsize=C_.PLOT_FIGZISE_RECT,
fext='metrics',
set_name='???',
):
fig, ax = plt.subplots(1, 1, figsize=figsize)
color_dict = utils.get_color_dict(model_names)
for kmn,model_name in enumerate(model_names):
new_rootdir = f'{rootdir}/{mode}/{model_name}'
new_rootdir = new_rootdir.replace('mode=pre-training', f'mode={mode}') # patch
new_rootdir = new_rootdir.replace('mode=fine-tuning', f'mode={mode}') # patch
filedirs = search_for_filedirs(new_rootdir, fext=fext, verbose=0)
print(f'[{kmn}] {model_name} (iters: {len(filedirs)})')
mn_dict = strings.get_dict_from_string(model_name)
rsc = mn_dict['rsc']
mdl = mn_dict['mdl']
is_parallel = 'Parallel' in mdl
metric_curve = []
for filedir in filedirs:
rdict = load_pickle(filedir, verbose=0)
#model_name = rdict['model_name']
days = rdict['days']
survey = rdict['survey']
band_names = ''.join(rdict['band_names'])
class_names = rdict['class_names']
metric_curve += [rdict['days_rec_metrics_df']['mse'].values[:][None,:]]
metric_curve = np.concatenate(metric_curve, axis=0)
xe_metric_curve = XError(np.log(metric_curve), 0)
label = f'{mdl} {rsc}'
color = color_dict[utils.get_cmodel_name(model_name)]
ax.plot(days, xe_metric_curve.median, '--' if is_parallel else '-', label=label, c=color)
ax.fill_between(days, xe_metric_curve.p15, xe_metric_curve.p85, alpha=0.25, fc=color)
title = 'log-reconstruction-wmse v/s days\n'
title += f'survey: {survey} - bands: {band_names}\n'
ax.set_title(title[:-1])
ax.set_xlabel('days')
ax.set_ylabel('mse')
ax.set_xlim([days.min(), days.max()])
ax.grid(alpha=0.5)
ax.legend(loc='upper right')
plt.show()
import matplotlib.pyplot as plt
from lchandler.plots.lc import plot_lightcurve
from fuzzytools.files import save_time_stamp
methods = [
'linear-fstw', 'bspline-fstw', 'spm-mle-fstw', 'spm-mle-estw',
'spm-mcmc-fstw', 'spm-mcmc-estw'
] if main_args.method == '.' else main_args.method
methods = [methods] if isinstance(methods, str) else methods
for method in methods:
filedir = f'../../surveys-save/survey=alerceZTFv7.1~bands=gr~mode=onlySNe~method={method}.splcds'
filedict = get_dict_from_filedir(filedir)
rootdir = filedict['_rootdir']
cfilename = filedict['_cfilename']
lcdataset = load_pickle(filedir)
lcset_info = lcdataset['raw'].get_info()
print(lcdataset)
lcset_names = lcdataset.get_lcset_names()
for lcset_name in lcset_names:
lcset = lcdataset[lcset_name]
for lcobj_name in lcset.get_lcobj_names():
print(
f'method={method} - lcset_name={lcset_name} - lcobj_name={lcobj_name}'
)
figsize = (12, 5)
fig, ax = plt.subplots(1, 1, figsize=figsize)
lcobj = lcset[lcobj_name]
c = lcset.class_names[lcobj.y]
for kb, b in enumerate(lcset.band_names):
def plot_metric(rootdir, metric_name, model_names, baselines_dict,
label_keys=[],
figsize=C_.PLOT_FIGZISE_RECT,
fext='metrics',
mode='fine-tuning',
set_name='???',
p=C_.P_PLOT,
alpha=0.2,
):
fig, axs = plt.subplots(1, 2, figsize=figsize)
color_dict = utils.get_color_dict(model_names)
#for kax,mode in enumerate(['fine-tuning']):
#for kax,mode in enumerate(['pre-training', 'fine-tuning']):
#ax = axs[kax]
for kmn,model_name in enumerate(model_names):
new_rootdir = f'{rootdir}/{mode}/{model_name}'
new_rootdir = new_rootdir.replace('mode=pre-training', f'mode={mode}') # patch
new_rootdir = new_rootdir.replace('mode=fine-tuning', f'mode={mode}') # patch
filedirs = search_for_filedirs(new_rootdir, fext=fext, verbose=0)
model_ids = sorted([int(strings.get_dict_from_string(f.split('/')[-1])['id']) for f in filedirs])
print(f'[{kmn}][{"-".join([str(m) for m in model_ids])}]{len(model_ids)}#')
print(f'\t{model_name}')
mn_dict = strings.get_dict_from_string(model_name)
rsc = mn_dict['rsc']
mdl = mn_dict['mdl']
is_parallel = 'Parallel' in mdl
ax = axs[int(not is_parallel)]
metric_curve = []
for filedir in filedirs:
rdict = load_pickle(filedir, verbose=0)
#model_name = rdict['model_name']
days = rdict['days']
survey = rdict['survey']
band_names = ''.join(rdict['band_names'])
class_names = rdict['class_names']
_, vs, interp_days = utils.get_metric_along_day(days, rdict, metric_name, days[-1])
metric_curve += [vs[None,:]]
metric_curve = np.concatenate(metric_curve, axis=0)
xe_metric_curve = XError(metric_curve, 0)
xe_curve_avg = XError(np.mean(metric_curve, axis=-1), 0)
label = f'{mdl}'
for label_key in label_keys:
if label_key in mn_dict.keys():
label += f' - {label_key}={mn_dict[label_key]}'
#label += f' ({utils.get_mday_avg_str(metric_name, days[-1])}={xe_curve_avg})'
label += f' ({xe_curve_avg}*)'
color = color_dict[utils.get_cmodel_name(model_name)] if rsc=='0' else 'k'
ax.plot(interp_days, xe_metric_curve.median, '--' if is_parallel else '-', label=label, c=color)
ax.fill_between(interp_days, getattr(xe_metric_curve, f'p{p}'), getattr(xe_metric_curve, f'p{100-p}'), alpha=alpha, fc=color)
title = f'{metric_name} v/s days\n'
title += f'survey={survey} - mode={mode} - eval={set_name} - bands={band_names}\n'
#ax.set_title(title)
fig.suptitle(title[:-1], va='bottom')
for kax,ax in enumerate(axs):
is_accuracy = 'accuracy' in metric_name
random_guess = 100./len(class_names)
if is_accuracy:
ax.plot(days, np.full_like(days, random_guess), ':', c='k', label=f'random guess accuracy ($100/N_c$)', alpha=.5)
if not baselines_dict is None:
ax.plot(days, np.full_like(days, baselines_dict[metric_name]), ':', c='k', label='FATS+b-RF baseline (complete light curves)')
ax.set_xlabel('days')
if kax==1:
ax.set_ylabel(None)
ax.set_yticklabels([])
ax.set_title('Serial Models')
else:
ax.set_ylabel(metric_name)
ax.set_title('Parallel Models')
ax.set_xlim([days.min(), days.max()])
ax.set_ylim([random_guess*.95, 100] if is_accuracy else [0, 1])
ax.grid(alpha=0.5)
ax.legend(loc='lower right')
fig.tight_layout()
plt.show()
def plot_cm(rootdir, model_names, day_to_metric,
figsize=C_.PLOT_FIGZISE_RECT,
fext='metrics',
mode='fine-tuning',
lcset_name='???',
export_animation=False,
fps=15,
):
for kmn,model_name in enumerate(model_names):
#fig, axs = plt.subplots(1, 2, figsize=figsize)
#ax = axs[kax]
new_rootdir = f'{rootdir}/{mode}/{model_name}'
new_rootdir = new_rootdir.replace('mode=pre-training', f'mode={mode}') # patch
new_rootdir = new_rootdir.replace('mode=fine-tuning', f'mode={mode}') # patch
filedirs = search_for_filedirs(new_rootdir, fext=fext, verbose=0)
model_ids = sorted([int(strings.get_dict_from_string(f.split('/')[-1])['id']) for f in filedirs])
print(f'[{kmn}][{"-".join([str(m) for m in model_ids])}]{len(model_ids)}#')
print(f'\t{model_name}')
mn_dict = strings.get_dict_from_string(model_name)
rsc = mn_dict['rsc']
mdl = mn_dict['mdl']
is_parallel = 'Parallel' in mdl
target_days = [d for d in load_pickle(filedirs[0], verbose=0)['days'] if d<=day_to_metric]
plot_animation = PlotAnimation(len(target_days), 10, dummy=not export_animation)
for kd,target_day in enumerate(target_days):
cms = []
accuracy = []
f1score = []
for filedir in filedirs:
rdict = load_pickle(filedir, verbose=0)
#model_name = rdict['model_name']
days = rdict['days']
survey = rdict['survey']
band_names = ''.join(rdict['band_names'])
class_names = rdict['class_names']
cms += [rdict['days_cm'][target_day][None,...]]
v, _, _ = utils.get_metric_along_day(days, rdict, 'b-accuracy', target_day)
accuracy += [v]
v, _, _ = utils.get_metric_along_day(days, rdict, 'b-f1score', target_day)
f1score += [v]
accuracy_xe = XError(accuracy)
f1score_xe = XError(f1score)
title = ''
title += f'{mn_dict["mdl"]}\n'
title += f'eval={lcset_name} - day={target_day:.2f}/{day_to_metric:.2f}\n'
title += f'b-f1score={f1score_xe}\n'
title += f'b-accuracy={accuracy_xe}\n'
cm_kwargs = {
#'fig':fig,
#'ax':ax,
'title':title[:-1],
'figsize':(6,5),
'new_order_classes':['SNIa', 'SNIbc', 'allSNII', 'SLSN'],
}
fig, ax = plot_custom_confusion_matrix(np.concatenate(cms, axis=0), class_names, **cm_kwargs)
plot_animation.add_frame(fig)
if kd<len(target_days)-1:
plt.close(fig)
else:
plt.show()
plot_animation.save(f'../temp/{model_name}.gif')
def get_band_names(rootdir):
filedirs = fcfiles.get_filedirs(rootdir)
filedir = filedirs[0]
return fcfiles.load_pickle(filedir)['band_names']
parser.add_argument('--method', type=str, default='.')
parser.add_argument('--kf', type=str, default='.')
parser.add_argument('--setn', type=str, default='train')
main_args = parser.parse_args()
print_big_bar()
###################################################################################################################################################
import numpy as np
from fuzzytools.files import load_pickle, save_pickle, get_dict_from_filedir
filedir = f'../../surveys-save/survey=alerceZTFv7.1~bands=gr~mode=onlySNe.splcds'
filedict = get_dict_from_filedir(filedir)
rootdir = filedict['_rootdir']
cfilename = filedict['_cfilename']
survey = filedict['survey']
lcdataset = load_pickle(filedir)
print(lcdataset)
###################################################################################################################################################
from synthsne.synthetic_datasets import generate_synthetic_dataset
import pandas as pd
import numpy as np
from synthsne import _C
import fuzzytools.files as ff
from fuzzytools.progress_bars import ProgressBar
from fuzzytools.files import load_pickle, save_pickle
from synthsne.distr_fittings import ObsErrorConditionalSampler
from synthsne.plots.samplers import plot_obse_samplers
from synthsne.plots.mcmc import plot_mcmc_prior
from fuzzytools.dicts import along_dict_obj_method
from nested_dict import nested_dict
def get_df_table(
rootdir,
metric_names,
model_names,
day_to_metric,
format_f,
fext='metrics',
mode='fine-tuning',
arch_modes=['Parallel', 'Serial'],
):
index_df = []
info_df = {}
for arch_mode in arch_modes:
for model_name in model_names:
info_df[f'{format_f(model_name)} [{arch_mode}]'] = []
for kmn, model_name in enumerate(model_names):
new_rootdir = f'{rootdir}/{mode}/{model_name}'
new_rootdir = new_rootdir.replace('mode=pre-training',
f'mode={mode}') # patch
new_rootdir = new_rootdir.replace('mode=fine-tuning',
f'mode={mode}') # patch
filedirs = search_for_filedirs(new_rootdir, fext=fext, verbose=0)
print(f'[{kmn}][{len(filedirs)}#] {model_name}')
mn_dict = strings.get_dict_from_string(model_name)
rsc = mn_dict['rsc']
mdl = mn_dict['mdl']
is_parallel = 'Parallel' in mdl
arch_mode = 'Parallel' if is_parallel else 'Serial'
if arch_mode in arch_modes:
for km, metric_name in enumerate(metric_names):
day_metric = []
day_metric_avg = []
for filedir in filedirs:
rdict = load_pickle(filedir, verbose=0)
#model_name = rdict['model_name']
days = rdict['days']
survey = rdict['survey']
band_names = ''.join(rdict['band_names'])
class_names = rdict['class_names']
v, vs, _ = utils.get_metric_along_day(
days, rdict, metric_name, day_to_metric)
day_metric += [v]
day_metric_avg += [vs.mean()]
xe_day_metric = dstats.XError(day_metric, 0)
xe_day_metric_avg = dstats.XError(day_metric_avg, 0)
key = f'{format_f(model_name)} [{arch_mode}]'
info_df[key] += [xe_day_metric]
info_df[key] += [xe_day_metric_avg]
key = f'metric={utils.get_mday_str(metric_name, day_to_metric)}'
if not key in index_df:
index_df += [key]
index_df += [
f'metric={utils.get_mday_avg_str(metric_name, day_to_metric)}'
]
info_df = pd.DataFrame.from_dict(info_df)
info_df.index = index_df
return info_df
parser.add_argument('--method', type=str, default='.')
parser.add_argument('--kf', type=str, default='.')
parser.add_argument('--setn', type=str, default='train')
main_args = parser.parse_args()
print_big_bar()
###################################################################################################################################################
import numpy as np
from fuzzytools.files import load_pickle, save_pickle, get_dict_from_filedir
filedir = f'../../surveys-save/survey=alerceZTFv7.1~bands=gr~mode=onlySNe.splcds'
filedict = get_dict_from_filedir(filedir)
rootdir = filedict['_rootdir']
cfilename = filedict['_cfilename']
survey = filedict['survey']
lcdataset = load_pickle(filedir)
print(lcdataset)
###################################################################################################################################################
import numpy as np
import fuzzytools.files as fcfiles
from fuzzytools.progress_bars import ProgressBar
from fuzzytools.files import load_pickle, save_pickle
from synthsne import _C
kfs = lcdataset.kfolds if main_args.kf == '.' else main_args.kf
kfs = [kfs] if isinstance(kfs, str) else kfs
setns = [str(setn) for setn in ['train', 'val']
] if main_args.setn == '.' else main_args.setn
setns = [setns] if isinstance(setns, str) else setns
