def _init(config, need_app=False):
if config.startswith('/'):
config_file = os.path.abspath(config)
else:
config_file = os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, os.pardir, config))
properties = load_app_properties(ini_file=config_file)
config = galaxy.config.Configuration(**properties)
object_store = build_object_store_from_config(config)
if not config.database_connection:
logging.warning("The database connection is empty. If you are using the default value, please uncomment that in your galaxy.ini")
if need_app:
app = galaxy.app.UniverseApplication(global_conf={'__file__': config_file, 'here': os.getcwd()})
else:
app = None
return (
mapping.init(
config.file_path,
config.database_connection,
create_tables=False,
object_store=object_store
),
object_store,
config.database_connection.split(':')[0],
config,
app
)
def _init(config, need_app=False):
if config.startswith('/'):
config_file = os.path.abspath(config)
else:
config_file = os.path.abspath(
os.path.join(os.path.dirname(__file__), os.pardir, os.pardir,
config))
properties = load_app_properties(ini_file=config_file)
config = galaxy.config.Configuration(**properties)
object_store = build_object_store_from_config(config)
if not config.database_connection:
logging.warning(
"The database connection is empty. If you are using the default value, please uncomment that in your galaxy.ini"
)
if need_app:
app = galaxy.app.UniverseApplication(global_conf={
'__file__': config_file,
'here': os.getcwd()
})
else:
app = None
return (mapping.init(config.file_path,
config.database_connection,
create_tables=False,
object_store=object_store), object_store,
config.database_connection.split(':')[0], config, app)
def _init(config):
if config.startswith('/'):
config = os.path.abspath(config)
else:
config = os.path.abspath(
os.path.join(os.path.dirname(__file__), os.pardir, config))
properties = load_app_properties(ini_file=config)
config = galaxy.config.Configuration(**properties)
object_store = build_object_store_from_config(config)
return (mapping.init(config.file_path,
config.database_connection,
create_tables=False,
object_store=object_store), object_store,
config.database_connection.split(':')[0])
def _init(config):
if config.startswith('/'):
config = os.path.abspath(config)
else:
config = os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, config))
properties = load_app_properties(ini_file=config)
config = galaxy.config.Configuration(**properties)
object_store = build_object_store_from_config(config)
return (
mapping.init(
config.file_path,
config.database_connection,
create_tables=False,
object_store=object_store
),
object_store,
config.database_connection.split(':')[0]
)