def job_config(self):
if not self.__job_configuration:
base_handler_pools = self.__job_configuration_base_pools or JobConfiguration.DEFAULT_BASE_HANDLER_POOLS
mock_uwsgi = mock.Mock()
mock_uwsgi.mule_id = lambda: 1
with mock.patch('galaxy.web.stack.uwsgi', mock_uwsgi), \
mock.patch('galaxy.web.stack.uwsgi.opt', self.__uwsgi_opt), \
mock.patch('galaxy.jobs.JobConfiguration.DEFAULT_BASE_HANDLER_POOLS', base_handler_pools):
self.__job_configuration = JobConfiguration(self.app)
return self.__job_configuration
def job_config(self):
if not self.__job_configuration:
self.__job_configuration = JobConfiguration(self.app)
return self.__job_configuration
# "resource_params": {"stampede_compute_resource": "stampede_normal"},
# "return_submit_native_specification": "--partition=normal --nodes=1 --cpus-per-task=16 --time=48:00:00 --account=TG-MCB140147",
# "return_destination_id": "stampede_normal"},
# {"ref_size": 1024 ** 4,
# "tool": tool_rnastar_indexed,
# "sbatch_node": "jetstream-iu-large",
# "resource_params": {"stampede_compute_resource": "stampede_development"},
# "return_submit_native_specification": "--partition=development --nodes=1 --cpus-per-task=16 --time=00:30:00 --account=TG-MCB140147",
# "return_destination_id": "stampede_development"},
]
mock_app = mock.MagicMock()
mock_app.tool_data_tables.get.return_value.get_entry.return_value = "mock_path"
mock_app.config.job_config_file = MAIN_JOB_CONF
mock_app.config.job_resource_params_file = MAIN_JOB_RESOURCE_PARAMS_CONF
mock_app.job_config = JobConfiguration(mock_app)
mock_job = mock.Mock()
mock_job.parameters = []
mock_job.id = 1
def test_user_presence():
with pytest.raises(JobMappingException):
mdw.dynamic_multi_bridges_select(mock_app,
tool_rnastar_indexed,
mock_job,
user_email=None,
resource_params=[])
@mock.patch("subprocess.Popen")