示例#1
0
    def parameters_display(self, trans, **kwd):
        """
        * GET /api/jobs/{job_id}/parameters_display
        * GET /api/datasets/{dataset_id}/parameters_display

            Resolve parameters as a list for nested display. More client logic
            here than is ideal but it is hard to reason about tool parameter
            types on the client relative to the server. Job accessibility checks
            are slightly different than dataset checks, so both methods are
            available.

            This API endpoint is unstable and tied heavily to Galaxy's JS client code,
            this endpoint will change frequently.

        :type   job_id: string
        :param  job_id: Encoded job id

        :type   dataset_id: string
        :param  dataset_id: Encoded HDA or LDDA id

        :type   hda_ldda: string
        :param  hda_ldda: hda if dataset_id is an HDA id (default), ldda if
                          it is an ldda id.

        :rtype:     list
        :returns:   job parameters for for display
        """
        job = self.__get_job(trans, **kwd)
        return summarize_job_parameters(trans, job)
示例#2
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    def handle_job_parameters(self, line, job):
        markdown = """
| Input Parameter | Value |
|-----------------|-------|
"""
        parameters = summarize_job_parameters(self.trans, job)["parameters"]
        for parameter in parameters:
            markdown += "| "
            depth = parameter["depth"]
            if depth > 1:
                markdown += f"{'>' * (parameter['depth'] - 1)} "
            markdown += parameter["text"]
            markdown += " | "
            value = parameter["value"]
            if isinstance(value, list):
                markdown += ", ".join(f"{p['hid']}: {p['name']}" for p in value)
            else:
                markdown += value
            markdown += " |\n"

        return (markdown, True)
示例#3
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    def handle_job_parameters(self, line, job):
        markdown = """
| Input Parameter | Value |
|-----------------|-------|
"""
        parameters = summarize_job_parameters(self.trans, job)["parameters"]
        for parameter in parameters:
            markdown += "| "
            depth = parameter["depth"]
            if depth > 1:
                markdown += ">" * (parameter["depth"] - 1) + " "
            markdown += parameter["text"]
            markdown += " | "
            value = parameter["value"]
            if isinstance(value, list):
                markdown += ", ".join("%s: %s" % (p["hid"], p["name"]) for p in value)
            else:
                markdown += value
            markdown += " |\n"

        return (markdown, True)