def __build_config_file_text(self, content):
if isinstance(content, str):
return content, True
config_type = content.get("type", "inputs")
if config_type == "inputs":
content_format = content["format"]
handle_files = content["handle_files"]
if content_format != "json":
template = "Galaxy can only currently convert inputs to json, format [%s] is unhandled"
message = template % content_format
raise Exception(message)
elif config_type == "files":
user_context = ProvidesUserFileSourcesUserContext(
self.request_context)
file_sources_dict = self.app.file_sources.to_dict(
for_serialization=True, user_context=user_context)
rval = json.dumps(file_sources_dict)
return rval, False
else:
raise Exception(f"Unknown config file type {config_type}")
return json.dumps(
wrapped_json.json_wrap(self.tool.inputs,
self.param_dict,
self.tool.profile,
handle_files=handle_files)), False
def __build_config_file_text( self, content ):
if isinstance( content, string_types ):
return content, True
content_format = content["format"]
if content_format != "json":
template = "Galaxy can only currently convert inputs to json, format [%s] is unhandled"
message = template % content_format
raise Exception(message)
return json.dumps(wrapped_json.json_wrap(self.tool.inputs, self.param_dict)), False
def __build_config_file_text( self, content ):
if isinstance( content, string_types ):
return content, True
content_format = content["format"]
if content_format != "json":
template = "Galaxy can only currently convert inputs to json, format [%s] is unhandled"
message = template % content_format
raise Exception(message)
return json.dumps(wrapped_json.json_wrap(self.tool.inputs, self.param_dict)), False
