def _handle_upload(file_cache, path, body, cache_token=None):
source = body
if cache_token:
cached_file = file_cache.destination(cache_token)
source = open(cached_file, 'rb')
log.info("Copying cached file %s to %s" % (cached_file, path))
copy_to_path(source, path)
return {"path": path}
def _handle_upload(file_cache, path, body, cache_token=None):
source = body
if cache_token:
cached_file = file_cache.destination(cache_token)
source = open(cached_file, 'rb')
log.info("Copying cached file %s to %s" % (cached_file, path))
copy_to_path(source, path)
return {"path": path}
def execute(self, command, args={}, data=None, input_path=None, output_path=None):
# If data set, should be unicode (on Python 2) or str (on Python 3).
from lwr.web import routes
from lwr.web.framework import build_func_args
controller = getattr(routes, command)
action = controller.func
body_args = dict(body=self.__build_body(data, input_path))
args = build_func_args(action, args.copy(), self.__app_args(), body_args)
result = action(**args)
if controller.response_type != 'file':
return controller.body(result)
else:
# TODO: Add to Galaxy.
from galaxy.util import copy_to_path
with open(result, 'rb') as result_file:
copy_to_path(result_file, output_path)
def execute(self,
command,
args={},
data=None,
input_path=None,
output_path=None):
# If data set, should be unicode (on Python 2) or str (on Python 3).
from lwr.web import routes
from lwr.web.framework import build_func_args
controller = getattr(routes, command)
action = controller.func
body_args = dict(body=self.__build_body(data, input_path))
args = build_func_args(action, args.copy(), self.__app_args(),
body_args)
result = action(**args)
if controller.response_type != 'file':
return controller.body(result)
else:
# TODO: Add to Galaxy.
from galaxy.util import copy_to_path
with open(result, 'rb') as result_file:
copy_to_path(result_file, output_path)
