def build_tool_tests(self,
testing_shed_tools=None,
return_test_classes=False):
if self.app is None:
return
if testing_shed_tools is None:
testing_shed_tools = getattr(self, "testing_shed_tools", False)
# We must make sure that functional.test_toolbox is always imported after
# database_contexts.galaxy_content is set (which occurs in this method above).
# If functional.test_toolbox is imported before database_contexts.galaxy_content
# is set, sa_session will be None in all methods that use it.
import functional.test_toolbox
functional.test_toolbox.toolbox = self.app.toolbox
# When testing data managers, do not test toolbox.
test_classes = functional.test_toolbox.build_tests(
app=self.app,
testing_shed_tools=testing_shed_tools,
master_api_key=get_admin_api_key(),
user_api_key=get_user_api_key(),
)
if return_test_classes:
return test_classes
return functional.test_toolbox
def build_tests(self):
"""Build data manager test methods."""
import functional.test_data_managers
functional.test_data_managers.data_managers = self.app.data_managers
functional.test_data_managers.build_tests(
tmp_dir=self.galaxy_test_tmp_dir,
testing_shed_tools=self.testing_shed_tools,
master_api_key=get_admin_api_key(),
user_api_key=get_user_api_key(),
user_email=self.app.config.admin_users_list[0],
create_admin=True,
)
def run_tool_test(self, tool_id, index=0, resource_parameters={}):
host, port, url = target_url_parts()
galaxy_interactor_kwds = {
"galaxy_url": url,
"master_api_key": get_master_api_key(),
"api_key": get_user_api_key(),
"keep_outputs_dir": None,
}
galaxy_interactor = GalaxyInteractorApi(**galaxy_interactor_kwds)
verify_tool(tool_id=tool_id,
test_index=index,
galaxy_interactor=galaxy_interactor,
resource_parameters=resource_parameters)
def _setup_interactor(self):
self.user_api_key = get_user_api_key()
self.master_api_key = get_master_api_key()
self.galaxy_interactor = ApiTestInteractor(self)