def plot_random_sfhs(targets='ancients'):
'''
plot the random sfr arrays with the data sfr arrays.
Hard coded file locations. So read the code.
'''
targets = galaxy_tests.load_targets(targets)
for target in targets:
target = target.lower()
# it doesn't matter which model so it is hard coded...
sfr_file_loc = os.path.join(snap_src, 'models', 'varysfh', target,
'caf09_s_nov13', 'mc')
hmc_file_loc = os.path.join(snap_src, 'data', 'sfh_parsec')
target = target.replace('-deep', '')
outfile = '%s_random_sfr.png' % target
hmc_file, = rsp.fileIO.get_files(hmc_file_loc, '%s*sfh' % target)
sfh = sfh_tests.StarFormationHistories(hmc_file, 'match-hmc',
sfr_file_loc=sfr_file_loc,
sfr_file_search_fmt='*sfr')
sfh.plot_sfh('sfr', plot_random_arrays_kw={'from_files': True},
outfile=outfile, zoom=True)
return
def plot_opt_hess(targets=None, fits_src='default', filter1='F606W'):
band = 'opt'
ylim = (0.5, -7)
if filter1 == 'F110W':
band = 'ir'
fits_src = 'default'
ylim = (-2, -8)
targets = galaxy_tests.load_targets(targets)
galss = rsp.Galaxies.galaxies([galaxy_tests.load_galaxy(t, band=band,
fits_src=fits_src)
for t in targets])
gals = rsp.Galaxies.galaxies(galss.select_on_key('filter1', filter1))
gals.squish('Color', 'Mag2', 'Trgb')
mean_trgb = np.mean(gals.Trgbs)
offset = gals.Trgbs - np.mean(gals.Trgbs)
gals.Mag2o = np.concatenate([g.Mag2 - offset[i] for i, g in enumerate(gals.galaxies)])
gals.Colorso = gals.Colors + gals.Mag2s - gals.Mag2o
galshess = rsp.astronomy_utils.hess(gals.Colorso, gals.Mag2o, 0.1, cbinsize=0.05)
#N, xedges, yedges = binned_statistic_2d(gals.Colors, gals.Mag2s, gals.Mag2s, 'count', bins=2000)
fig, ax = plt.subplots()
#im = ax.imshow(np.log10(N.T), origin='lower',
## extent=[xedges[0], xedges[-1], yedges[0],
# yedges[-1]],
# aspect='auto', interpolation='nearest',
# cmap=plt.cm.RdBu)
extent = [galshess[0][0], galshess[0][-1], galshess[1][-1], galshess[1][0]]
imshow_kw={'norm': LogNorm(vmin=None, vmax=galshess[2].max()),
'cmap': plt.cm.gray_r, 'interpolation': 'nearest',
'aspect': 'equal', 'extent': extent}
ax.plot(gals.Colorso, gals.Mag2o, ',', color='black')
ax.autoscale(False)
ax.set_xlim(-1, 3)
ax.set_ylim(ylim)
#ax.imshow(galshess[2], **imshow_kw)
ax.set_aspect(1./2.)
ax.set_xlabel('$%s-%s$' % (filter1, gals.galaxies[0].filter2), fontsize=fontlarge)
ax.set_ylabel('$%s$' % gals.galaxies[0].filter2, fontsize=fontlarge)
ax.hlines(mean_trgb, *ax.get_xlim(), lw=2, color='red', zorder=100)
#ax.hlines(mean_trgb+1.5, *ax.get_xlim(), lw=2, color='red', zorder=100)
#for k, v in poly_dict.items():
# ax.plot(v[:,0], v[:,1])
#plt.colorbar(cs)
#plt.savefig('opt_cmd_f606w.png', dpi=150)
return fig, ax, gals
def run_match_stats(targets='ancients'):
targets = galaxy_tests.load_targets(targets)
hmc_file_loc = os.path.join(snap_src, 'data', 'sfh_parsec')
cmd_file_loc = os.path.join(hmc_file_loc, 'cmd_files')
for target in targets:
target = target.lower()
try:
target = target.replace('-deep', '')
hmc_file, = rsp.fileIO.get_files(hmc_file_loc, '%s*sfh' % target)
cmd_file, = rsp.fileIO.get_files(cmd_file_loc, '%s*cmd' % target)
except:
print target, 'cmd file not found.'
continue
rsp.match_utils.match_stats(hmc_file, cmd_file)
return
def completeness_table(targets, comp_val, ast_kw=None, outfile='default'):
'''
ex: completeness_table('ancients', 0.9)
'''
targets = galaxy_tests.load_targets(targets)
if outfile == 'default':
outfile = os.path.join(snap_src + '/tables/',
'completeness_%.2f.dat' % comp_val)
fmt = '%(target)s %(opt_filter1)s %(opt_filter2)s %(ir_filter1)s %(ir_filter2)s \n'
with open(outfile, 'w') as out:
out.write('# completeness fraction: %.2f \n' % comp_val)
out.write('# '\
+ fmt.replace('%(', '').replace(')s', '').replace('\'', ''))
for target in targets:
print target
ast_dict = find_completeness(target, comp_val)
ast_dict['target'] = target
out.write(fmt % ast_dict)
logger.info('wrote %s' % outfile)
outfname = '%s_%s_cmd.png' % (target, band)
outfile = os.path.join(snap_src, 'plots', outfname)
fig.savefig(outfile, dpi=150)
def add_color_cuts(filter1, ax=None, vline_kw=None):
vline_kw = vline_kw or {}
if ax is None:
fig, ax = plt.subplots()
color_cut = sfh_tests.get_color_cut(filter1)
ax.vlines(color_cut, *ax.get_ylim(), **vline_kw)
return ax
if __name__ == '__main__':
targets = galaxy_tests.load_targets('ancients')
plot_cum_sum_sfr(targets)
[[plot_cmd_lf(target, band) for target in targets] for band in ['opt', 'ir']]
# below here was thesis spaz
def ave_galaxy_cmd(targets=None, filter1=None, filter2=None):
if targets is None:
targets = galaxy_tests.targets_z002()
if filter1 is None:
filter1 = 'F160W'
if filter2 is None:
filter2 = 'F110W'