def test_model_class_par_init():
x = Parameter("x", 4, "cm")
y = Parameter("y", 10)
model = MyModel(x=x, y=y)
assert x is model.x
assert y is model.y
class CoModel(Model):
"""Compound model example"""
norm = Parameter("norm", 42, "cm")
def __init__(self, m1, m2, norm=norm.quantity):
self.m1 = m1
self.m2 = m2
super().__init__(norm=norm)
@property
def parameters(self):
return Parameters([self.norm]) + self.m1.parameters + self.m2.parameters
class MyModel(Model):
"""Simple model example"""
x = Parameter("x", 1, "cm")
y = Parameter("y", 2)
def __init__(self, m1, a=1, y=99):
self.m1 = m1
a = Parameter("a", a)
y = Parameter("y", y)
self.default_parameters = Parameters([a, y])
super().__init__(a=a, y=y)
class SkyDiffuseCascadeCube(SpatialModel):
"""Cube sky map model for electromagnetic cascades.
Parameters
----------
cascmap : `~simCRpropa.cascmaps.CascMap`
Cascade Map template
spectral_model : `SpectralModel`
Spectral model of the injected particles.
rotation: float
Rotation angle of the cascade template
tmax: float
Maximum delay time in years allowed for the cascade.
interp_kwargs : dict
Interpolation keyword arguments passed to `gammapy.maps.Map.interp_by_coord`.
Default arguments are {'interp': 'linear', 'fill_value': 0}.
"""
tag = "SkyDiffuseCascadeCube"
rotation = Parameter("rotation", 0., unit="deg", frozen=True)
tmax = Parameter("tmax", 1e7, unit="yr", frozen=True)
_apply_irf_default = {"exposure": True, "psf": True, "edisp": True}
def __init__(
self,
cascmap,
spectral_model,
rotation=rotation.quantity,
tmax=tmax.quantity,
interp_kwargs=None,
apply_irf=None,
name=None,
):
self.cascmap = cascmap
self._spectral_model = spectral_model
self._energy_unit_spectral_model = energy_unit_spectral_model
self._name = name
interp_kwargs = {} if interp_kwargs is None else interp_kwargs
interp_kwargs.setdefault("interp", "linear")
interp_kwargs.setdefault("fill_value", 0)
self._interp_kwargs = interp_kwargs
self._cached_value = None
self._cached_weights = None
self._cached_coordinates = (None, None, None)
if apply_irf is None:
apply_irf = self._apply_irf_default.copy()
self.apply_irf = apply_irf
super().__init__(tmax=tmax, rotation=rotation)
@property
def name(self):
return self._name
def _interpolate(self, lon, lat, energy):
coord = {
"lon": lon.to_value("deg"),
"lat": lat.to_value("deg"),
"energy": energy,
}
return self.cascmap.add_primary_to_casc().interp_by_coord(
coord, **self._interp_kwargs)
def evaluate(self, lon, lat, energy, **kwargs):
"""Evaluate model at given coordinates"""
rotation = kwargs.pop("rotation")
tmax = kwargs.pop("tmax")
# change max delay time
if not tmax == self.cascmap.tmax:
self.cascmap.tmax = tmax
# change rotation angle
# and apply rotation
if not rotation == self.cascmap.angle:
self.cascmap.angle = rotation
# change spectral weights
self.cascmap.apply_spectral_weights(self._inj_spec,
smooth=True,
**kwargs)
is_cached_coord = [
_ is coord
for _, coord in zip((lon, lat, energy), self._cached_coordinates)
]
# reset cache
if not np.all(is_cached_coord):
self._cached_value = None
if self._cached_weights is not None and \
not np.all(np.equal(self.cascmap.weights, self._cached_weights)):
self._cached_weights = None
if self._cached_value is None or self._cached_weights is None:
self._cached_coordinates = (lon, lat, energy)
self._cached_value = self._interpolate(lon, lat, energy)
self._cached_weights = self.cascmap.weights
return u.Quantity(self._cached_value,
self.cascmap.casc_obs.unit,
copy=False)
def copy(self):
"""A shallow copy"""
new = copy.copy(self)
return new
@property
def position(self):
"""`~astropy.coordinates.SkyCoord`"""
return self.cascmap.casc_obs.geom.center_skydir
@property
def evaluation_radius(self):
"""`~astropy.coordinates.Angle`"""
return np.max(self.cascmap.casc_obs.geom.width) / 2.0
@property
def parameters(self):
return (Parameters([self.rotation, self.tmax]) +
self.spectral_model.parameters)
def to_dict(self):
data = super().to_dict()
data["name"] = self.name
data["type"] = data.pop("type")
data["spectral_model"] = self.spectral_model.to_dict()
data["parameters"] = Parameters([self.rotation, self.tmax]).to_dict()
if self.apply_irf != self._apply_irf_default:
data["apply_irf"] = self.apply_irf
return data
def __str__(self):
str_ = self.__class__.__name__ + "\n\n"
str_ += "\tParameters:\n"
info = _get_parameters_str(self.parameters)
lines = info.split("\n")
str_ += "\t" + "\n\t".join(lines[:-1])
str_ += "\n\n"
return str_.expandtabs(tabsize=2)
class CascadeSpectralModel(SpectralModel):
"""Spectral model for electromagnetic cascades.
Parameters
----------
cascmap : `~simCRpropa.cascmaps.CascMap`
Cascade Map template
spectral_model : `SpectralModel`
Spectral model of the injected particles.
ebl: `EBLAbsorptionNormSpectralModel`
EBL model to be used
region: region object
region in which cascade is summed up
rotation: float
Rotation angle of the cascade template
tmax: float
Maximum delay time in years allowed for the cascade.
bias: float
energy bias for the TeV energy spectrum
interp_kwargs : dict
Interpolation keyword arguments passed to `gammapy.maps.Map.interp_by_coord`.
Default arguments are {'interp': 'linear', 'fill_value': 0}.
add_primary: bool
if true, add the observed flux from the point source in evaluate function
"""
tag = "CascadeSpectralModel"
rotation = Parameter("rotation", 0., unit="deg", frozen=True)
tmax = Parameter("tmax", 1e7, unit="yr", frozen=True)
bias = Parameter("bias",
0.,
unit=u.dimensionless_unscaled,
frozen=True,
min=-0.2,
max=0.2)
_apply_irf_default = {"exposure": True, "psf": True, "edisp": True}
def __init__(self,
cascmap,
spectral_model,
ebl,
region,
rotation=rotation.quantity,
tmax=tmax.quantity,
bias=bias.quantity,
interp_kwargs=None,
apply_irf=None,
name=None,
add_primary=True,
energy_unit_spectral_model="TeV",
use_gammapy_interp=False):
self.cascmap = cascmap
self._intrinsic_spectral_model = spectral_model
self._ebl = ebl
self._name = name
self._inj_spec = None
self._energy_unit_spectral_model = energy_unit_spectral_model
self._set_injection_spectrum()
self.region = region
self.add_primary = add_primary
# get central sky coordinates
self._lon, self._lat = cascmap.casc_obs.geom.center_coord[:-1]
interp_kwargs = {} if interp_kwargs is None else interp_kwargs
#interp_kwargs.setdefault("interp", "linear")
#interp_kwargs.setdefault("fill_value", 0)
interp_kwargs.setdefault("interp", 1)
self._interp_kwargs = interp_kwargs
self._cached_value = None
self._cached_weights = None
self._cached_coordinates = (None, None, None)
self.use_gammapy_interp = use_gammapy_interp
if apply_irf is None:
apply_irf = self._apply_irf_default.copy()
self.apply_irf = apply_irf
super().__init__(tmax=tmax, rotation=rotation, bias=bias)
@property
def name(self):
return self._name
@property
def ebl(self):
return self._ebl
@property
def intrinsic_spectral_model(self):
return self._intrinsic_spectral_model
def _set_injection_spectrum(self):
def inj_spec(energy, **kwargs):
if isinstance(energy, u.Quantity):
x = energy.to(self._energy_unit_spectral_model)
else:
x = energy * u.Unit(self._energy_unit_spectral_model)
return self._intrinsic_spectral_model.evaluate(x, **kwargs)
self._inj_spec = inj_spec
def _interpolate(self, energy):
spec = self.cascmap.get_obs_spectrum(self.region)
if self.use_gammapy_interp:
coord = {
"lon": self._lon,
"lat": self._lat,
"energy_true": energy,
}
result = spec.interp_by_coord(coord, **
self._interp_kwargs) * spec.unit
else:
data = spec.data[:, 0, 0]
data[data <= 0] = 1e-40
x = spec.geom.axes['energy_true'].center
interp = interp1d(np.log(x.value),
np.log(data),
fill_value='extrapolate',
kind='linear')
result = np.exp(interp(np.log(energy.to(
x.unit).value))) * spec.unit
return result
def evaluate(self, energy, **kwargs):
"""Evaluate model at given coordinates"""
rotation = kwargs.pop("rotation")
tmax = kwargs.pop("tmax")
smooth = kwargs.pop("smooth", True)
bias = kwargs.pop("bias")
# change max delay time
if not tmax == self.cascmap.tmax:
self.cascmap.tmax = tmax
# change rotation angle
# and apply rotation
if not rotation == self.cascmap.angle:
self.cascmap.angle = rotation
# calculate flux from observed point source specturm
# first the ebl contribution
# and remove parameters from kwargs that belong to the EBL model
kwargs_ebl = {}
for k in self._ebl.parameters.names:
kwargs_ebl[k] = kwargs.pop(k)
result = self._ebl.evaluate(energy * (1. + bias), **kwargs_ebl)
result *= self._intrinsic_spectral_model.evaluate(
energy * (1. + bias), **kwargs)
# change spectral weights
self.cascmap.apply_spectral_weights(injspec=self._inj_spec,
smooth=smooth,
force_recompute=True,
**kwargs)
is_cached_coord = [
_ is coord for _, coord in zip(energy, self._cached_coordinates)
]
# reset cache
if not np.all(is_cached_coord):
self._cached_value = None
if self._cached_weights is not None and \
not np.all(np.equal(self.cascmap.weights, self._cached_weights)):
self._cached_weights = None
if self._cached_value is None or self._cached_weights is None:
self._cached_coordinates = energy
self._cached_value = self._interpolate(energy * (1. + bias))
self._cached_weights = self.cascmap.weights
if self.add_primary:
result += self._cached_value.to(result.unit)
else:
result = self._cached_value.to(result.unit)
return result
def copy(self):
"""A shallow copy"""
new = copy.copy(self)
return new
@property
def parameters(self):
return (Parameters([self.rotation, self.tmax, self.bias]) +
self._intrinsic_spectral_model.parameters +
self._ebl.parameters)
def to_dict(self):
data = super().to_dict()
data["name"] = self.name
data["type"] = data.pop("type")
data["spectral_model"] = self.spectral_model.to_dict()
data["parameters"] = Parameters([self.rotation, self.tmax]).to_dict()
if self.apply_irf != self._apply_irf_default:
data["apply_irf"] = self.apply_irf
return data
def __str__(self):
str_ = self.__class__.__name__ + "\n\n"
str_ += "\tParameters:\n"
info = _get_parameters_str(self.parameters)
lines = info.split("\n")
str_ += "\t" + "\n\t".join(lines[:-1])
str_ += "\n\n"
return str_.expandtabs(tabsize=2)
def __init__(self, m1, a=1, y=99):
self.m1 = m1
parameters = [Parameter("a", a), Parameter("y", y)]
super()._init_from_parameters(parameters)