def core_parameters(lines, dataFile):
""" Given a list of data base records (one entry per transition) return python lists of the most important spectrocopic line parameters. """
# column start/stop for all types of parameters
if 'hit' in dataFile.lower() or 'sao' in dataFile.lower():
iw, lw, iS, lS, iE, lE, iA, lA, isw, lsw, iT, lT, iI, lI = 3, 15, 15, 25, 45, 55, 35, 40, 40, 45, 55, 59, 2, 3
else:
from geisa import set_geisa_fields
fields = set_geisa_fields(dataFile)
for key, val in fields.items():
exec key + '=' + repr(val)
# now extract columns, convert to appropriate type (int/float)
linedata = {}
linedata['position'] = np.array([float(line[iw:lw]) for line in lines])
# linedata['strength'] = [float(replace(line[iS:lS],'D','e')) for line in lines]
linedata['strength'] = np.array(
[float(line[iS:lS].replace('D', 'e')) for line in lines])
linedata['energy'] = np.array([float(line[iE:lE]) for line in lines])
linedata['airWidth'] = np.array([float(line[iA:lA]) for line in lines])
linedata['Tdep'] = np.array([float(line[iT:lT]) for line in lines])
# isoNr = [int(line[iI:lI]) for line in lines]
if 'hit' in dataFile.lower() or 'geisa' in dataFile.lower():
linedata['selfWidth'] = np.array(
[float(line[isw:lsw]) for line in lines])
else:
linedata['selfWidth'] = len(lines) * np.array(
[0]) # a list with nLines zeros
return linedata
def core_parameters (lines, dataFile):
""" Given a list of data base records (one entry per transition) return python lists of the most important spectrocopic line parameters. """
# column start/stop for all types of parameters
if 'hit' in dataFile.lower() or 'sao' in dataFile.lower():
iw,lw, iS,lS, iE, lE, iA,lA, isw, lsw, iT,lT, iI,lI = 3,15, 15,25, 45,55, 35,40, 40,45, 55,59, 2,3
else:
from geisa import set_geisa_fields
fields = set_geisa_fields (dataFile)
for key,val in fields.items(): exec key + '=' + repr(val)
# now extract columns, convert to appropriate type (int/float)
linedata = {}
linedata['position'] = np.array([float(line[iw:lw]) for line in lines])
# linedata['strength'] = [float(replace(line[iS:lS],'D','e')) for line in lines]
linedata['strength'] = np.array([float(line[iS:lS].replace('D','e')) for line in lines])
linedata['energy'] = np.array([float(line[iE:lE]) for line in lines])
linedata['airWidth'] = np.array([float(line[iA:lA]) for line in lines])
linedata['Tdep'] = np.array([float(line[iT:lT]) for line in lines])
# isoNr = [int(line[iI:lI]) for line in lines]
if 'hit' in dataFile.lower() or 'geisa' in dataFile.lower():
linedata['selfWidth'] = np.array([float(line[isw:lsw]) for line in lines])
else:
linedata['selfWidth'] = len(lines)*np.array([0]) # a list with nLines zeros
return linedata
def core_parameters(lines, dataFile):
""" Given a list of data base records (one entry per transition) return python lists of the most important spectrocopic line parameters. """
# column start/stop for all types of parameters
if "hit" in dataFile.lower() or "sao" in dataFile.lower():
iw, lw, iS, lS, iE, lE, iA, lA, isw, lsw, iT, lT, iI, lI = 3, 15, 15, 25, 45, 55, 35, 40, 40, 45, 55, 59, 2, 3
else:
from geisa import set_geisa_fields
fields = set_geisa_fields(dataFile)
for key, val in fields.items():
exec key + "=" + repr(val)
# now extract columns, convert to appropriate type (int/float)
positions = [float(line[iw:lw]) for line in lines]
strengths = [float(replace(line[iS:lS], "D", "e")) for line in lines]
energies = [float(line[iE:lE]) for line in lines]
airWidths = [float(line[iA:lA]) for line in lines]
tempDeps = [float(line[iT:lT]) for line in lines]
isoNr = [int(line[iI:lI]) for line in lines]
if "hit" in dataFile.lower() or "geisa" in dataFile.lower():
selfWidths = [float(line[isw:lsw]) for line in lines]
else:
selfWidths = len(lines) * [0] # a list with nLines zeros
return positions, strengths, energies, airWidths, selfWidths, tempDeps, isoNr
def split_molecules(lines, dataFile):
""" Given the list of database records extracted from Hitran/Geisa, distribute the entries in separate lists for each molecule. """
# initialize dictionary
lineLists = {}
if "hit" in dataFile.lower():
mol_id = get_mol_id_nr(molecules, "hitran") # translation dictionary: hitran molecular ID numbers --> names
im, lm = 0, 2 # set indices for molecular id
elif "geisa" in dataFile.lower():
from geisa import set_geisa_fields
fields = set_geisa_fields(dataFile)
im, lm = fields["iM"], fields["lM"]
mol_id = get_mol_id_nr(molecules, "geisa") # translation dictionary: geisa molecular ID numbers --> names
# split list of lines
for line in lines:
molNr = int(line[im:lm])
molec = mol_id.get(molNr)
if molec in lineLists:
lineLists[molec].append(line)
elif molec > 0:
lineLists[molec] = [line]
else:
raise SystemExit, "ERROR --- extract: unknown molecule with ID number " + ` molNr `
return lineLists