Python get_family_dict示例

示例#1

文件： gemini_query.py 项目： bgossele/gemini

def family_wise_predicate(args):
    families = get_family_dict(args)
    predicates = []
    for f in families.values():
        family_names = [x.name for x in f]
        subjects = get_subjects_in_family(args, f).values()
        predicates.append(select_subjects_predicate(subjects, args,
                                                    family_names))
    def predicate(row):
        return sum([p(row) for p in predicates]) >= args.min_kindreds
    return predicate

示例#2

文件： gemini_query.py 项目： kmsteinberg/gemini

def family_wise_predicate(args):
    formatter = select_formatter(args)
    families = get_family_dict(args)
    gq = GeminiQuery.GeminiQuery(args.db, out_format=formatter)
    predicates = []
    for f in families.values():
        family_names = [x.name for x in f]
        subjects = get_subjects_in_family(args, f).values()
        predicates.append(select_subjects_predicate(subjects, args,
                                                    family_names))
    def predicate(row):
        return sum([p(row) for p in predicates]) >= args.min_kindreds
    return predicate

示例#3

def family_wise_predicate(args):
    families = get_family_dict(args)
    predicates = []
    for f in families.values():
        family_names = [x.name for x in f]
        subjects = get_subjects_in_family(args, f).values()
        predicates.append(
            select_subjects_predicate(subjects, args, family_names))

    def predicate(row):
        return sum([p(row) for p in predicates]) >= args.min_kindreds

    return predicate

示例#4

def family_wise_predicate(args):
    formatter = select_formatter(args)
    families = get_family_dict(args)
    gq = GeminiQuery.GeminiQuery(args.db, out_format=formatter)
    predicates = []
    for f in families.values():
        family_names = [x.name for x in f]
        subjects = get_subjects_in_family(args, f).values()
        predicates.append(select_subjects_predicate(subjects, args,
                                                    family_names))
    def predicate(row):
        return sum([p(row) for p in predicates]) >= args.min_kindreds
    return predicate