# Create the LIMS interface instance, and check the connection and version. lims = Lims(BASEURI, USERNAME, PASSWORD) lims.check_version() # Get the list of all projects. projects = lims.get_projects() print len(projects), 'projects in total' # Get the list of all projects opened since May 30th 2012. day = '2012-05-30' projects = lims.get_projects(open_date=day) print len(projects), 'projects opened since', day # Get the project with the specified LIMS id, and print some info. project = lims.get_project('KRA61') print project, project.name, project.open_date print 'UDFs:' for key, value in project.udf.items(): if isinstance(value, unicode): value = codecs.encode(value, 'UTF-8') print ' ', key, '=', value udt = project.udt if udt: print 'UDT:', udt.udt for key, value in udt.items(): if isinstance(value, unicode): value = codecs.encode(value, 'UTF-8') print ' ', key, '=', value
from genologics.lims import Lims # Login parameters for connecting to a LIMS instance. # NOTE: Modify according to your setup. from genologics.site_cloud import BASEURI, USERNAME, PASSWORD # Create the LIMS interface instance, and check the connection and version. lims = Lims(BASEURI, USERNAME, PASSWORD) lims.check_version() # Get the list of all samples. samples = lims.get_samples() print len(samples), 'samples in total' # Get the list of samples in the project with the LIMS id KLL60. project = lims.get_project('KLL60') samples = lims.get_samples(projectlimsid=project.id) print len(samples), 'samples in', project print # Get the sample with the LIMS id JGR58A21, and print info and its UDFs. sample = lims.get_sample('JGR58A21') print sample.id, sample.name, sample.date_received, sample.uri, for key, value in sample.udf.items(): print ' ', key, '=', value # Get the sample with the name 'Joels proper sample-20'. # Check that it is the sample as the previously obtained sample; # not just equal, but exactly the same instance, courtesy of the Lims cache. samples = lims.get_samples(name='Joels proper sample-20') print samples[0].name, samples[0] is sample