def test_RegionMask_fromGeom():
# fromGeom with wkt
rm1 = RegionMask.fromGeom(geom.convertWKT(
POLY, srs='latlon'), pixelRes=1000)
assert (rm1.extent.xXyY == (4329000.0, 4771000.0, 835000.0, 1682000.0))
assert (rm1.extent.srs.IsSame(EPSG3035))
assert rm1.mask.sum() == 79274
# fromGeom with geometry
dxy = 0.05
rm2 = RegionMask.fromGeom(GEOM, pixelRes=dxy, srs=EPSG4326, padExtent=0.2)
assert rm2.extent == Extent(9.90, 30.30, 14.80, 38.30)
assert rm2.extent.srs.IsSame(EPSG4326)
g = GEOM.Clone()
g.TransformTo(EPSG4326)
assert np.isclose(rm2.mask.sum() * dxy * dxy, g.Area(), rtol=1e-3)
# fromGeom with geometry and extent
dxy = 0.05
definedExtent = Extent(9.50, 30.25, 14.80, 38.35)
rm3 = RegionMask.fromGeom(
GEOM, pixelRes=dxy, srs=EPSG4326, extent=definedExtent)
assert rm3.extent == definedExtent
assert rm3.extent.srs.IsSame(EPSG4326)
g = GEOM.Clone()
g.TransformTo(EPSG4326)
assert np.isclose(rm3.mask.sum() * dxy * dxy, g.Area(), rtol=1e-3)
def test_RegionMask_warp():
# setup
rm_3035 = RegionMask.fromGeom(geom.point(6.20, 50.75).Buffer(0.05))
rm = RegionMask.fromGeom(geom.point(6.20, 50.75).Buffer(0.05),
srs=EPSG4326,
pixelRes=0.0005)
# basic warp Raster
warped_1 = rm_3035.warp(CLC_RASTER_PATH)
assert warped_1.dtype == np.uint8
assert warped_1.shape == rm_3035.mask.shape
assert np.isclose(warped_1.sum(), 88128)
assert np.isclose(warped_1.std(), 9.52214123991)
#rm_3035.createRaster(data=warped_1, output=result("regionMask_warp_1.tif"), overwrite=True)
# basic warp Raster (FLIP CHECK!)
warped_1f = rm_3035.warp(CLC_FLIPCHECK_PATH)
assert warped_1f.dtype == np.uint8
assert warped_1f.shape == rm_3035.mask.shape
assert np.isclose(warped_1f.sum(), 88128)
assert np.isclose(warped_1f.std(), 9.52214123991)
#rm_3035.createRaster(data=warped_1f, output=result("regionMask_warp_1f.tif"), overwrite=True)
assert (warped_1 == warped_1f).all()
# basic warp Raster with srs change
warped_2 = rm.warp(CLC_RASTER_PATH)
assert warped_2.dtype == np.uint8
assert warped_2.shape == rm.mask.shape
assert np.isclose(warped_2.sum(), 449627)
assert np.isclose(warped_2.std(), 9.07520801659)
#rm.createRaster(data=warped_2, output=result("regionMask_warp_2.tif"), overwrite=True)
# Define resample alg and output type
warped_3 = rm.warp(CLC_RASTER_PATH, dtype="float", resampleAlg='near')
assert warped_3.dtype == np.float64
assert warped_3.shape == rm.mask.shape
assert np.isclose(warped_3.sum(), 449317.0)
assert np.isclose(warped_3.std(), 9.37570375729)
#rm.createRaster(data=warped_3, output=result("regionMask_warp_3.tif"), overwrite=True)
# define a resolution div
warped_4 = rm.warp(CLC_RASTER_PATH,
resolutionDiv=5,
resampleAlg='near',
noData=0)
assert warped_4.dtype == np.uint8
assert warped_4.shape == (rm.mask.shape[0] * 5, rm.mask.shape[1] * 5)
assert np.isclose(warped_4.sum(), 11240881)
assert np.isclose(warped_4.std(), 9.37633272361)
def test_RegionMask_fromVector():
# fromVector with a padded extent and defined srs
rm0 = RegionMask.fromVector(
AACHEN_SHAPE_PATH, pixelRes=0.001, srs=EPSG4326, padExtent=0.1)
assert rm0.mask.sum() == 90296
# fromVector - ID select
rm1 = RegionMask.fromVector(MULTI_FTR_SHAPE_PATH, where=1)
assert (rm1.extent == Extent(
4069100, 2867000, 4109400, 2954000, srs=EPSG3035))
assert (rm1.attributes["name"] == "dog")
ds = ogr.Open(MULTI_FTR_SHAPE_PATH)
lyr = ds.GetLayer()
ftr = lyr.GetFeature(1)
g = ftr.GetGeometryRef().Clone()
g.TransformTo(EPSG3035)
# check if total areas are close to one another
assert np.isclose(rm1.mask.sum() * 100 * 100, g.Area(), rtol=1e-3)
# fromVector - 'where' select
rm2 = RegionMask.fromVector(
MULTI_FTR_SHAPE_PATH, srs=EPSG4326, pixelRes=0.01, where="name='monkey'")
assert (rm2.extent == Extent(6.83, 49.52, 7.53, 49.94))
assert (rm2.attributes["id"] == 3)
ftr = lyr.GetFeature(3)
g = ftr.GetGeometryRef().Clone()
g.TransformTo(EPSG4326)
assert np.isclose(rm2.mask.sum(), 1948.0)
# fromVector - 'where' select fail no features
try:
rm3 = RegionMask.fromVector(
MULTI_FTR_SHAPE_PATH, srs=EPSG4326, pixelRes=0.01, where="name='monkeyy'")
assert False
except error.GeoKitRegionMaskError as e:
assert str(e) == 'Zero features found'
else:
assert False
# fromVector - 'where' finds many features
try:
rm4 = RegionMask.fromVector(
MULTI_FTR_SHAPE_PATH, srs=EPSG4326, pixelRes=0.01, where=r"name like 'mo%'")
assert False
except error.GeoKitRegionMaskError as e:
assert 'Multiple fetures found' in str(e)
else:
assert False
def test_RegionMask_pixelRes():
# test succeed
rm1 = RegionMask.fromMask(Extent(0, 0, 100, 100, srs=EPSG3035), MASK_DATA)
ps = rm1.pixelRes
assert ps == 1
# test fail
rm2 = RegionMask.fromMask(Extent(0, 0, 100, 200, srs=EPSG3035), MASK_DATA)
try:
ps = rm2.pixelRes
assert False
except error.GeoKitRegionMaskError as e:
assert str(
e) == 'pixelRes only accessable when pixelWidth equals pixelHeight'
else:
assert False
def test_RegionMask_subTiles():
rm = RegionMask.fromVector(AACHEN_SHAPE_PATH)
tiles = list(rm.subTiles(9, checkIntersect=False))
assert len(tiles) == 4
tiles = list(rm.subTiles(10, checkIntersect=False))
assert len(tiles) == 9
tiles = list(rm.subTiles(11, checkIntersect=False))
assert len(tiles) == 20
tiles = list(rm.subTiles(12, checkIntersect=False))
assert len(tiles) == 63
tiles = list(rm.subTiles(9))
assert len(tiles) == 4
tiles = list(rm.subTiles(10))
assert len(tiles) == 7
tiles = list(rm.subTiles(11))
assert len(tiles) == 13
tiles = list(rm.subTiles(12))
assert len(tiles) == 35
def test_RegionMask_indicateFeatures():
# setup
rm = RegionMask.fromVector(AACHEN_SHAPE_PATH)
# Simple case
res = rm.indicateFeatures(NATURA_PATH, where="SITECODE='DE5404303'")
#print("%.7f"%res.sum(), "%.7f"%res.std())
assert np.isclose(res.sum(), 649, 1e-6)
assert np.isclose(res.std(), 0.0646270, 1e-6)
# Buffered Cases
res2 = rm.indicateFeatures(
NATURA_PATH, where="SITETYPE='B'", buffer=300, resolutionDiv=3, forceMaskShape=True)
#print("%.7f"%res2.sum(), "%.7f"%res2.std())
assert np.isclose(res2.sum(), 13670.5555556, 1e-6)
res3 = rm.indicateFeatures(NATURA_PATH, where="SITETYPE='B'", buffer=300,
bufferMethod='area', resolutionDiv=5, forceMaskShape=True)
#print("%.7f"%res3.sum(), "%.7f"%res3.std())
assert np.isclose(res3.sum(), 13807.320000, 1e-6)
# No indication case
res4 = rm.indicateFeatures(NATURA_PATH, where="SITETYPE='D'", buffer=300,
bufferMethod='area', resolutionDiv=2, forceMaskShape=True, noData=-1)
#print("%.7f"%res4.sum(), "%.7f"%res4.std())
assert np.isclose(res4.sum(), -83792, 1e-6)
def test_RegionMask_applyMask():
## setup
rm = RegionMask.fromGeom(point(6.20, 50.75).Buffer(0.05),
srs=EPSG4326,
pixelRes=0.001)
data1 = np.arange(rm.mask.size).reshape(rm.mask.shape)
data2 = np.arange(rm.mask.shape[0] * 3 * rm.mask.shape[1] * 3).reshape(
(rm.mask.shape[0] * 3, rm.mask.shape[1] * 3))
## test applying
data1 = rm.applyMask(data1)
if not (data1.sum() == 39296070
and abs(data1.std() - 3020.0893432) < 0.001):
error("applyMask 1 - data mismatch")
data2 = rm.applyMask(data2.astype('int64'))
if not (data2.sum() == 3183264630
and abs(data2.std() - 27182.1342973) < 0.001):
error("applyMask 2 - data mismatch")
#rm.createRaster(output=result("regionMask_applyMask_1.tif"), data=data1, overwrite=True)
#rm.createRaster(3, output=result("regionMask_applyMask_2.tif"), data=data2, overwrite=True)
print("RegionMask_applyMask passed")
def test_RegionMask_rasterize():
# setup
rm = RegionMask.fromVector(AACHEN_SHAPE_PATH, pixelRes=0.001, srs=EPSG4326)
# simple rasterize
rasterize_1 = rm.rasterize(AACHEN_ZONES)
assert rasterize_1.dtype == np.uint8
assert rasterize_1.shape == rm.mask.shape
assert np.isclose(rasterize_1.sum(), 47191)
assert np.isclose(rasterize_1.std(), 0.42181050527)
#rm.createRaster(data=rasterize_1, output=result("regionMask_rasterize_1.tif"), overwrite=True)
# attribute rasterizing
rasterize_2 = rm.rasterize(AACHEN_ZONES, value="YEAR", dtype="int16")
assert rasterize_2.dtype == np.int16
assert rasterize_2.shape == rm.mask.shape
assert np.isclose(rasterize_2.sum(), 94219640)
assert np.isclose(rasterize_2.std(), 842.177748527)
#rm.createRaster(data=rasterize_2, output=result("regionMask_rasterize_2.tif"), overwrite=True)
# where statement and resolution div
rasterize_3 = rm.rasterize(
AACHEN_ZONES, value=10, resolutionDiv=5, where="YEAR>2000", dtype=float)
assert rasterize_3.dtype == np.float64
assert rasterize_3.shape == (rm.mask.shape[0] * 5, rm.mask.shape[1] * 5)
assert np.isclose(rasterize_3.sum(), 4578070.0)
assert np.isclose(rasterize_3.std(), 2.85958813405)
def test_RegionMask_buildGeometry():
# setup
rm2 = RegionMask.fromVector(AACHEN_SHAPE_PATH)
rm2.buildMask() # Be sure the mask is in place
# Get the "real" geometry
ds = ogr.Open(AACHEN_SHAPE_PATH)
lyr = ds.GetLayer()
ftr = lyr.GetFeature(0)
realGeom = ftr.GetGeometryRef().Clone()
realGeom.TransformTo(EPSG3035)
# check initial geom and real geom area
if not abs(rm2.geometry.Area() -
realGeom.Area()) / realGeom.Area() < 0.001:
error("geometry - reading from file")
# destroy and recreate
rm2.buildGeometry()
if not abs(
(rm2.geometry.Area() - realGeom.Area()) / realGeom.Area()) < 0.001:
error("geometry - building geometry")
print("RegionMask_buildGeometry passed")
def test_RegionMask_buildMask():
# Build from another srs
rm = RegionMask.load(AACHEN_SHAPE_PATH, srs=EPSG3035, pixelRes=100)
compare(rm.mask.sum(), 70944)
compare(rm.mask.std(), 0.498273451386)
print("RegionMask_buildMask passed")
def test_RegionMask_fromMask():
ext = Extent(0, 0, 100, 100, srs=EPSG3035)
rm = RegionMask.fromMask(
mask=MASK_DATA, extent=ext, attributes={"hats": 5})
assert rm.mask.sum() == MASK_DATA.sum() # mask
assert rm.extent == ext # extent
assert rm.srs.IsSame(ext.srs) # srs
def test_RegionMask___init__():
ext = Extent(0, 0, 100, 100, srs=EPSG3035)
# test succeed
rm = RegionMask(ext, 1, mask=MASK_DATA)
rm = RegionMask(ext, (1, 1), mask=MASK_DATA)
rm = RegionMask(ext, 2, geom=GEOM)
# no mask or geometry given
try:
rm = RegionMask(ext, 1)
assert False
except error.GeoKitRegionMaskError as e:
assert str(e) == 'Either mask or geom should be defined'
else:
assert False
# bad pixel given
try:
rm = RegionMask(ext, (1, 3), geom=GEOM)
assert False
except error.GeoKitRegionMaskError as e:
assert str(e) == 'The given extent does not fit the given pixelRes'
else:
assert False
# bad mask given
try:
rm = RegionMask(ext, (1, 2), mask=MASK_DATA)
assert False
except error.GeoKitRegionMaskError as e:
assert str(
e) == 'Extent and pixels sizes do not correspond to mask shape'
else:
assert False
# bad geom given
try:
rm = RegionMask(ext, (1, 2), geom="bananas")
assert False
except error.GeoKitRegionMaskError as e:
assert str(e) == 'geom is not an ogr.Geometry object'
else:
assert False
# bad geom given 2
badGeom = GEOM.Clone()
badGeom.AssignSpatialReference(None)
try:
rm = RegionMask(ext, (1, 2), geom=badGeom)
assert False
except error.GeoKitRegionMaskError as e:
assert str(e) == 'geom does not have an srs'
else:
assert False
def test_RegionMask_fromMask():
ext = Extent(0, 0, 100, 100, srs=EPSG3035)
rm = RegionMask.fromMask(mask=MASK_DATA,
extent=ext,
attributes={"hats": 5})
if not rm.mask.sum() == MASK_DATA.sum(): error("fromSource - mask")
if not rm.extent == ext: error("fromSource - extent")
if not rm.srs.IsSame(ext.srs): error("fromSource - srs")
print("RegionMask_fromMask passed")
def test_RegionMask_pixelRes():
# test succeed
rm1 = RegionMask.fromMask(Extent(0, 0, 100, 100, srs=EPSG3035), MASK_DATA)
ps = rm1.pixelRes
if not ps == 1: error("pixelRes")
# test fail
rm2 = RegionMask.fromMask(Extent(0, 0, 100, 200, srs=EPSG3035), MASK_DATA)
try:
ps = rm2.pixelRes
error("pixelRes - fail test")
except GeoKitRegionMaskError as e:
if not str(
e
) == 'pixelRes only accessable when pixelWidth equals pixelHeight':
error("pixelRes - fail test")
else:
error("pixelRes - fail test")
print("RegionMask_pixelRes passed")
def test_RegionMask_vectorPath():
rm2 = RegionMask.fromVector(AACHEN_SHAPE_PATH)
vec = rm2.vectorPath
# Temp vector is created
assert isfile(vec)
# Temp vector is deleted
del rm2
assert not isfile(vec)
def test_RegionMask_vectorPath():
rm2 = RegionMask.fromVector(AACHEN_SHAPE_PATH)
vec = rm2.vectorPath
if not isfile(vec): error("vector creation")
del rm2
if isfile(vec): error("vector deletion")
print("RegionMask_vectorPath passed")
def test_RegionMask_vector():
rm2 = RegionMask.fromVector(AACHEN_SHAPE_PATH)
vec = rm2.vector
vec.GetLayer()
# Temp vector is created
assert util.isVector(vec)
# Temp vector is still not deleted
del vec
assert util.isVector(rm2._vector)
def test_RegionMask_fromGeom():
# fromGeom with wkt
rm1 = RegionMask.fromGeom(convertWKT(POLY, srs='latlon'), pixelRes=1000)
if (rm1.extent.xXyY != (4329000.0, 4771000.0, 835000.0, 1682000.0)):
error("fromGeom - extent bounds")
if not (rm1.extent.srs.IsSame(EPSG3035)): error("fromGeom - extent srs")
if (rm1.mask.sum() != 79274): error("fromGeom - mask")
# fromGeom with geometry
dxy = 0.05
rm2 = RegionMask.fromGeom(GEOM, pixelRes=dxy, srs=EPSG4326, padExtent=0.2)
if (not rm2.extent == Extent(9.90, 30.30, 14.80, 38.30)):
error("fromGeom - extent bounds")
if not (rm2.extent.srs.IsSame(EPSG4326)): error("fromGeom - extent srs")
g = GEOM.Clone()
g.TransformTo(EPSG4326)
if not abs(rm2.mask.sum() * dxy * dxy - g.Area()) / g.Area(
) < 0.01: # check if total areas are close to one another
error("fromGeom - mask")
# fromGeom with geometry and extent
dxy = 0.05
definedExtent = Extent(9.50, 30.25, 14.80, 38.35)
rm3 = RegionMask.fromGeom(GEOM,
pixelRes=dxy,
srs=EPSG4326,
extent=definedExtent)
if (not rm3.extent == definedExtent):
error("fromGeom - extent bounds")
if not (rm3.extent.srs.IsSame(EPSG4326)): error("fromGeom - extent srs")
g = GEOM.Clone()
g.TransformTo(EPSG4326)
if not abs(rm3.mask.sum() * dxy * dxy - g.Area()) / g.Area(
) < 0.01: # check if total areas are close to one another
error("fromGeom - mask")
print("RegionMask_fromGeom passed")
def test_RegionMask_vector():
rm2 = RegionMask.fromVector(AACHEN_SHAPE_PATH)
vec = rm2.vector
vec.GetLayer()
if not isVector(vec): error("vector creation")
del vec
if not isVector(rm2._vector): error("vector retention")
print("RegionMask_vector passed")
def test_RegionMask_indicateValues():
## Setup
rm = RegionMask.fromVector(AACHEN_SHAPE_PATH, pixelRes=0.001, srs=EPSG4326)
# Testing valueMin (with srs change)
res1 = rm.indicateValues(CLC_RASTER_PATH, value=(20, None))
if not (isclose(res1.sum(), 30969.6796875, 1e-6)
and isclose(res1.std(), 0.3489773, 1e-6)):
error("indicateValues - valueMin")
# Testing valueMax (with srs change)
res2 = rm.indicateValues(CLC_RASTER_PATH, value=(None, 24))
if not (isclose(res2.sum(), 82857.5078125, 1e-6)
and isclose(res2.std(), 0.4867994, 1e-6)):
error("indicateValues - valueMax")
# Testing valueEquals (with srs change)
res3 = rm.indicateValues(CLC_RASTER_PATH, value=7, resampleAlg="cubic")
if not (isclose(res3.sum(), 580.9105835, 1e-4)
and isclose(res3.std(), 0.0500924, 1e-6)):
error("indicateValues - valueEquals")
# Testing range
res4 = rm.indicateValues(CLC_RASTER_PATH, value=(20, 24))
combi = np.logical_and(res1 > 0.5, res2 > 0.5)
# Some pixels will not end up the same due to warping issues
if not ((res4 > 0.5) != combi).sum() < res4.size * 0.001:
error("indicateValues - range")
# Testing buffering
res5 = rm.indicateValues(CLC_RASTER_PATH,
value=(1, 2),
buffer=0.01,
resolutionDiv=2,
forceMaskShape=True)
if not isclose(res5.sum(), 65030.75000000, 1e-4):
error("indicateValues - grown")
# make sure we get an empty mask when nothing is indicated
res6 = rm.indicateValues(CLC_RASTER_PATH,
value=2000,
buffer=0.01,
resolutionDiv=2,
forceMaskShape=True,
noData=-1)
if not isclose(res6.sum(), -113526.0, 1e-4):
error("indicateValues - empty")
print("RegionMask_indicateValues passed")
def test_RegionMask_applyMask():
# setup
rm = RegionMask.fromGeom(geom.point(6.20, 50.75).Buffer(
0.05), srs=EPSG4326, pixelRes=0.001)
data1 = np.arange(rm.mask.size).reshape(rm.mask.shape)
data2 = np.arange(rm.mask.shape[0] * 3 * rm.mask.shape[1]
* 3).reshape((rm.mask.shape[0] * 3, rm.mask.shape[1] * 3))
# test applying
data1 = rm.applyMask(data1)
assert data1.sum() == 39296070
assert np.isclose(data1.std(), 3020.0893432)
data2 = rm.applyMask(data2.astype('int64'))
assert data2.sum() == 3183264630
assert np.isclose(data2.std(), 27182.1342973)
def test_RegionMask_buildGeometry():
# setup
rm2 = RegionMask.fromVector(AACHEN_SHAPE_PATH)
rm2.buildMask() # Be sure the mask is in place
# Get the "real" geometry
ds = ogr.Open(AACHEN_SHAPE_PATH)
lyr = ds.GetLayer()
ftr = lyr.GetFeature(0)
realGeom = ftr.GetGeometryRef().Clone()
realGeom.TransformTo(EPSG3035)
# check initial geom and real geom area
assert np.isclose(rm2.geometry.Area(), realGeom.Area(), rtol=1e-3)
# destroy and recreate
rm2.buildGeometry()
assert np.isclose(rm2.geometry.Area(), realGeom.Area(), rtol=1e-3)
def test_RegionMask_createRaster():
rm = RegionMask.fromGeom(point(6.20, 50.75).Buffer(0.05),
srs=EPSG4326,
pixelRes=0.001)
## Create a raster like the mask
ds = rm.createRaster()
dsInfo = rasterInfo(ds)
if not abs(dsInfo.xMin - 6.15) < 0.001: error("createRaster 1 - extent")
if not abs(dsInfo.xMax - 6.25) < 0.001: error("createRaster 1 - extent")
if not abs(dsInfo.yMin - 50.70) < 0.001: error("createRaster 1 - extent")
if not abs(dsInfo.yMax - 50.80) < 0.001: error("createRaster 1 - extent")
if not dsInfo.srs.IsSame(EPSG4326): error("createRaster 1 - srs")
if not dsInfo.dtype == gdal.GDT_Byte: error("createRaster 1 - dtype")
# Fill a raster with mask data
out2 = result("rasterMast_createRaster_2.tif")
rm.createRaster(output=out2, data=rm.mask, overwrite=True)
ds = gdal.Open(out2)
band = ds.GetRasterBand(1)
if (band.ReadAsArray() - rm.mask).any():
error("createRaster 2 - data mismatch")
############ The function is not meant for scaling down
# # test Scaling down
# scaledData = scaleMatrix(rm.mask,-4)
# ds = rm.createRaster(resolutionDiv=1/4, data=scaledData, overwrite=True)
# band = ds.GetRasterBand(1)
# if (band.ReadAsArray()-scaledData).any(): error("createRaster 3 - data mismatch")
# test Scaling up
scaledData = scaleMatrix(rm.mask, 2)
ds = rm.createRaster(resolutionDiv=2, data=scaledData, overwrite=True)
band = ds.GetRasterBand(1)
if (band.ReadAsArray() - scaledData).any():
error("createRaster 4 - data mismatch")
print("RegionMask_createRaster passed")
def test_RegionMask_indicateValues():
# Setup
rm = RegionMask.fromVector(AACHEN_SHAPE_PATH, pixelRes=0.001, srs=EPSG4326)
# Testing valueMin (with srs change)
res1 = rm.indicateValues(CLC_RASTER_PATH, value=(20, None))
assert np.isclose(res1.sum(), 30969.6796875, 1e-6)
assert np.isclose(res1.std(), 0.3489773, 1e-6)
# Testing valueMax (with srs change)
res2 = rm.indicateValues(CLC_RASTER_PATH, value=(None, 24))
assert np.isclose(res2.sum(), 82857.5078125, 1e-6)
assert np.isclose(res2.std(), 0.4867994, 1e-6)
# Testing valueEquals (with srs change)
res3 = rm.indicateValues(CLC_RASTER_PATH, value=7, resampleAlg="cubic")
assert np.isclose(res3.sum(), 580.9105835, 1e-4)
assert np.isclose(res3.std(), 0.0500924, 1e-6)
# Testing range
res4 = rm.indicateValues(CLC_RASTER_PATH, value=(20, 24))
combi = np.logical_and(res1 > 0.5, res2 > 0.5)
# Some pixels will not end up the same due to warping issues
assert ((res4 > 0.5) != combi).sum() < res4.size * 0.001
# Testing buffering
res5 = rm.indicateValues(CLC_RASTER_PATH, value=(
1, 2), buffer=0.01, resolutionDiv=2, forceMaskShape=True)
assert np.isclose(res5.sum(), 65030.75000000, 1e-4)
# make sure we get an empty mask when nothing is indicated
res6 = rm.indicateValues(CLC_RASTER_PATH, value=2000, buffer=0.01,
resolutionDiv=2, forceMaskShape=True, noData=-1)
assert np.isclose(res6.sum(), -113526.0, 1e-4)
# Test set exclusion
res7 = rm.indicateValues(
CLC_RASTER_PATH,
value="[-.2),[5-7.00),12,(22-26],29,33.01,[40.-]")
assert np.isclose(res7.sum(), 45724.746, 1e-4)
def test_RegionMask_rasterize():
## setup
rm = RegionMask.fromVector(AACHEN_SHAPE_PATH, pixelRes=0.001, srs=EPSG4326)
## simple rasterize
rasterize_1 = rm.rasterize(AACHEN_ZONES)
if not (rasterize_1.dtype == np.uint8): error("rasterize 1 - dtype")
if not (rasterize_1.shape == rm.mask.shape): error("rasterize 1 - shape")
if not (isclose(rasterize_1.sum(), 47191)
and isclose(rasterize_1.std(), 0.42181050527)):
error("rasterize 1 - result")
#rm.createRaster(data=rasterize_1, output=result("regionMask_rasterize_1.tif"), overwrite=True)
# attribute rasterizing
rasterize_2 = rm.rasterize(AACHEN_ZONES, value="YEAR", dtype="int16")
if not (rasterize_2.dtype == np.int16): error("rasterize 2 - dtype")
if not (rasterize_2.shape == rm.mask.shape): error("rasterize 2 - shape")
if not (isclose(rasterize_2.sum(), 94219640)
and isclose(rasterize_2.std(), 842.177748527)):
error("rasterize 2 - result")
#rm.createRaster(data=rasterize_2, output=result("regionMask_rasterize_2.tif"), overwrite=True)
# where statement and resolution div
rasterize_3 = rm.rasterize(AACHEN_ZONES,
value=10,
resolutionDiv=5,
where="YEAR>2000",
dtype=float)
if not (rasterize_3.dtype == np.float64): error("rasterize 3 - dtype")
if not (rasterize_3.shape == (rm.mask.shape[0] * 5, rm.mask.shape[1] * 5)):
error("rasterize 3 - shape")
if not (isclose(rasterize_3.sum(), 4578070.0)
and isclose(rasterize_3.std(), 2.85958813405)):
error("rasterize 3 - result")
#rm.createRaster(data=scaleMatrix(rasterize_3,-5), output=result("regionMask_rasterize_3.tif"), overwrite=True)
print("RegionMask_rasterize passed")
def test_RegionMask_createRaster():
rm = RegionMask.fromGeom(geom.point(6.20, 50.75).Buffer(0.05),
srs=EPSG4326,
pixelRes=0.001)
# Create a raster like the mask
ds = rm.createRaster()
dsInfo = raster.rasterInfo(ds)
assert np.isclose(dsInfo.xMin, 6.15)
assert np.isclose(dsInfo.xMax, 6.25)
assert np.isclose(dsInfo.yMin, 50.70)
assert np.isclose(dsInfo.yMax, 50.80)
assert dsInfo.srs.IsSame(EPSG4326)
assert dsInfo.dtype == gdal.GDT_Byte
# Fill a raster with mask data
out2 = result("rasterMast_createRaster_2.tif")
rm.createRaster(output=out2, data=rm.mask, overwrite=True)
ds = gdal.Open(out2)
band = ds.GetRasterBand(1)
assert np.isclose(band.ReadAsArray(), rm.mask).all()
# The function is not meant for scaling down
# # test Scaling down
# scaledData = scaleMatrix(rm.mask,-4)
# ds = rm.createRaster(resolutionDiv=1/4, data=scaledData, overwrite=True)
# band = ds.GetRasterBand(1)
# if (band.ReadAsArray()-scaledData).any(): error("createRaster 3 - data mismatch")
# test Scaling up
scaledData = util.scaleMatrix(rm.mask, 2)
ds = rm.createRaster(resolutionDiv=2, data=scaledData, overwrite=True)
band = ds.GetRasterBand(1)
assert np.isclose(band.ReadAsArray(), scaledData).all()
def test_RegionMask_fromVector():
# fromVector with a padded extent and defined srs
rm0 = RegionMask.fromVector(AACHEN_SHAPE_PATH,
pixelRes=0.001,
srs=EPSG4326,
padExtent=0.1)
if (rm0.mask.sum() != 90296): error("fromVector - mask")
# fromVector - ID select
rm1 = RegionMask.fromVector(MULTI_FTR_SHAPE_PATH, where=1)
if not (rm1.extent == Extent(
4069100, 2867000, 4109400, 2954000, srs=EPSG3035)):
error("fromVector - extent bounds")
if not (rm1.attributes["name"] == "dog"): error("fromVector - attributes")
ds = ogr.Open(MULTI_FTR_SHAPE_PATH)
lyr = ds.GetLayer()
ftr = lyr.GetFeature(1)
g = ftr.GetGeometryRef().Clone()
g.TransformTo(EPSG3035)
if not abs(rm1.mask.sum() * 100 * 100 - g.Area()) / g.Area(
) < 0.01: # check if total areas are close to one another
error("fromVector - mask area")
# fromVector - 'where' select
rm2 = RegionMask.fromVector(MULTI_FTR_SHAPE_PATH,
srs=EPSG4326,
pixelRes=0.01,
where="name='monkey'")
if not (rm2.extent == Extent(6.83, 49.52, 7.53, 49.94)):
error("fromVector - extent bounds")
if not (rm2.attributes["id"] == 3): error("fromVector - attributes")
ftr = lyr.GetFeature(3)
g = ftr.GetGeometryRef().Clone()
g.TransformTo(EPSG4326)
if not isclose(rm2.mask.sum(), 1948.0):
error("fromVector - mask area")
# fromVector - 'where' select fail no features
try:
rm3 = RegionMask.fromVector(MULTI_FTR_SHAPE_PATH,
srs=EPSG4326,
pixelRes=0.01,
where="name='monkeyy'")
error("fromVector - fail no features")
except GeoKitRegionMaskError as e:
if not str(e) == 'Zero features found':
error("fromVector - fail no features")
else:
error("fromVector - fail no features")
# fromVector - 'where' finds many features
try:
rm4 = RegionMask.fromVector(MULTI_FTR_SHAPE_PATH,
srs=EPSG4326,
pixelRes=0.01,
where=r"name like 'mo%'")
error("fromVector - fail multi features")
except GeoKitRegionMaskError as e:
if not 'Multiple fetures found' in str(e):
error("fromVector - fail multi features")
else:
error("fromVector - fail multi features")
print("RegionMask_fromVector passed")
def test_RegionMask_warp():
## setup
rm_3035 = RegionMask.fromGeom(point(6.20, 50.75).Buffer(0.05))
rm = RegionMask.fromGeom(point(6.20, 50.75).Buffer(0.05),
srs=EPSG4326,
pixelRes=0.0005)
## basic warp Raster
warped_1 = rm_3035.warp(CLC_RASTER_PATH)
if not (warped_1.dtype == np.uint8): error("warp 1 - dtype")
if not (warped_1.shape == rm_3035.mask.shape): error("warp 1 - shape")
if not (isclose(warped_1.sum(), 88128)
and isclose(warped_1.std(), 9.52214123991)):
error("warp 1 - result")
#rm_3035.createRaster(data=warped_1, output=result("regionMask_warp_1.tif"), overwrite=True)
## basic warp Raster (FLIP CHECK!)
warped_1f = rm_3035.warp(CLC_FLIPCHECK_PATH)
if not (warped_1f.dtype == np.uint8): error("warp 1f - dtype")
if not (warped_1f.shape == rm_3035.mask.shape): error("warp 1f - shape")
if not (isclose(warped_1f.sum(), 88128)
and isclose(warped_1f.std(), 9.52214123991)):
error("warp 1f - result")
#rm_3035.createRaster(data=warped_1f, output=result("regionMask_warp_1f.tif"), overwrite=True)
if not (warped_1 == warped_1f).all(): error("warp - flipping error")
## basic warp Raster with srs change
warped_2 = rm.warp(CLC_RASTER_PATH)
if not (warped_2.dtype == np.uint8): error("warp 2 - dtype")
if not (warped_2.shape == rm.mask.shape): error("warp 2 - shape")
if not (isclose(warped_2.sum(), 449627)
and isclose(warped_2.std(), 9.07520801659)):
error("warp 2 - result")
#rm.createRaster(data=warped_2, output=result("regionMask_warp_2.tif"), overwrite=True)
## Define resample alg and output type
warped_3 = rm.warp(CLC_RASTER_PATH, dtype="float", resampleAlg='near')
if not (warped_3.dtype == np.float64): error("warp 3 - dtype")
if not (warped_3.shape == rm.mask.shape): error("warp 3 - shape")
if not (isclose(warped_3.sum(), 449317.0)
and isclose(warped_3.std(), 9.37570375729)):
error("warp 3 - result")
#rm.createRaster(data=warped_3, output=result("regionMask_warp_3.tif"), overwrite=True)
## define a resolution div
warped_4 = rm.warp(CLC_RASTER_PATH,
resolutionDiv=5,
resampleAlg='near',
noData=0)
if not (warped_4.dtype == np.uint8): error("warp 4 - dtype")
if not (warped_4.shape == (rm.mask.shape[0] * 5, rm.mask.shape[1] * 5)):
error("warp 4 - shape")
if not (isclose(warped_4.sum(), 11240881)
and isclose(warped_4.std(), 9.37633272361)):
error("warp 4 - result")
#rm.createRaster(5, data=warped_4, output=result("regionMask_warp_4.tif"), noData=0, overwrite=True)
print("RegionMask_warp passed")
def test_RegionMask_buildMask():
# Build from another srs
rm = RegionMask.load(AACHEN_SHAPE_PATH, srs=EPSG3035, pixelRes=100)
assert np.isclose(rm.mask.sum(), 70944)
assert np.isclose(rm.mask.std(), 0.498273451386)