#!/bin/env python27
from getwiki import GPTWiki
import sys
fromwiki = sys.argv[1].upper()
towiki = sys.argv[2].upper()
assert fromwiki in ("PROD", "DEV", "TEST")
assert towiki in ("PROD", "DEV", "TEST")
assert fromwiki != towiki
w1 = GPTWiki(smwenv=fromwiki, quiet=True)
print >> sys.stderr, "from: %s" % (w1.title(), )
w2 = GPTWiki(smwenv=towiki, quiet=True)
print >> sys.stderr, " to: %s" % (w2.title(), )
dummy = raw_input("Enter to proceed, <Ctrl-C> to abort:")
currentids = set()
for page in w1.iterpages(include_categories=('Transition', 'Peptide',
'TransitionGroup')):
id = page.name
currentids.add(id)
it = w1.get(id)
if w2.put(it):
print >> sys.stderr, "Pushing %s to %s" % (id, w2.title())
else:
print >> sys.stderr, "No change to %s in %s" % (id, w2.title())
for page in w2.iterpages(include_categories=('Transition', 'Peptide',
#!/bin/env python27
from getwiki import GPTWiki
import sys
w = GPTWiki()
w.dumpsite(sys.argv[1],
exclude_categories=['Peptide', 'Transition', 'TransitionGroup'])
default=False,
help="Upload TG status and peptide nrt to GPTwiki. Default: False.")
opts, args = parser.parse_args()
if opts.cachefile and os.path.exists(opts.cachefile):
data = json.loads(open(opts.cachefile).read())
rows = data['rows']
tgs = data['tgs']
origpepnrt = data['pepnrt']
else:
monos = "NHFS"
tgs = dict()
origpepnrt = dict()
rows = []
w = GPTWiki(quiet=True)
for tg in w.itertransgroups():
pepid = tg.get('peptide')
p = w.get(pepid)
pepacc = p.get('id')
pepseq = p.get('sequence')
pepname = p.get('name')
pepnrt = p.get('nrt')
if not tg.has('nrt'):
continue
nrt = float(tg.get('nrt'))
glyacc = p.get('glycan')[0][0]
g = w.get(glyacc)
gsym = g.get('sym')
mcnt = {}
for mono in monos: