def _plot_start_or_end_markers( storm_object_table_one_track, axes_object, plot_at_start, marker_type, marker_size, track_colour=None, colour_map_object=None, colour_norm_object=None): """Plots marker at beginning or end of each storm track. :param storm_object_table_one_track: Same as input for `plot_storm_tracks`, except that this table contains only one track (primary storm ID). :param axes_object: See doc for `plot_storm_outlines`. :param plot_at_start: Boolean flag. If True, will plot at beginning of each track. If False, at end of each track. :param marker_type: Marker type. :param marker_size: Marker size. :param track_colour: Track colour. This may be None. :param colour_map_object: [used only if `track_colour is None`]: Colour scheme (instance of `matplotlib.pyplot.cm` or similar). :param colour_norm_object: Normalizer for colour scheme. """ num_storm_objects = len(storm_object_table_one_track.index) for i in range(num_storm_objects): if plot_at_start: these_indices = temporal_tracking.find_immediate_predecessors( storm_object_table=storm_object_table_one_track, target_row=i ) else: these_indices = temporal_tracking.find_immediate_successors( storm_object_table=storm_object_table_one_track, target_row=i ) if len(these_indices) > 0: continue if colour_map_object is None: this_colour = track_colour else: this_time_unix_sec = storm_object_table_one_track[ tracking_utils.VALID_TIME_COLUMN ].values[i] this_colour = colour_map_object(colour_norm_object( this_time_unix_sec )) this_x_coord = storm_object_table_one_track[ tracking_utils.CENTROID_X_COLUMN ].values[i] this_y_coord = storm_object_table_one_track[ tracking_utils.CENTROID_Y_COLUMN ].values[i] axes_object.plot( this_x_coord, this_y_coord, linestyle='None', marker=marker_type, markersize=marker_size, markerfacecolor=this_colour, markeredgecolor=this_colour, markeredgewidth=2 if marker_type == 'x' else 1 )
def test_find_immediate_successors_first_5sec(self): """Ensures correct output from find_immediate_successors. In this case, working on the first table with max time difference = 5 seconds. """ this_num_storm_objects = len(FIRST_STORM_OBJECT_TABLE.index) for i in range(this_num_storm_objects): these_successor_rows = temporal_tracking.find_immediate_successors( storm_object_table=FIRST_STORM_OBJECT_TABLE, target_row=i, max_time_diff_seconds=5) these_successor_rows = numpy.sort(these_successor_rows) these_expected_rows = numpy.sort( numpy.array(FIRST_IMMED_SUCCESSOR_DICT_5SEC[i], dtype=int)) self.assertTrue( numpy.array_equal(these_successor_rows, these_expected_rows))
def _plot_one_track( storm_object_table_one_track, axes_object, basemap_object, line_width, line_colour=None, colour_map_object=None, colour_norm_object=None): """Plots one storm track. :param storm_object_table_one_track: Same as input for `plot_storm_tracks`, except that this table contains only one track (primary storm ID). :param axes_object: See doc for `plot_storm_outlines`. :param basemap_object: Same. :param line_width: Track width. :param line_colour: Track colour. This may be None. :param colour_map_object: [used only if `line_colour is None`]: Colour scheme (instance of `matplotlib.pyplot.cm` or similar). :param colour_norm_object: Normalizer for colour scheme. """ num_storm_objects = len(storm_object_table_one_track.index) if num_storm_objects == 1: this_storm_object_table = storm_object_table_one_track.iloc[[0, 0]] _plot_one_track_segment( storm_object_table_one_segment=this_storm_object_table, axes_object=axes_object, basemap_object=basemap_object, line_width=line_width, line_colour=line_colour, colour_map_object=colour_map_object, colour_norm_object=colour_norm_object) return latitudes_deg = 0. + storm_object_table_one_track[ tracking_utils.CENTROID_LATITUDE_COLUMN ].values[[0, -1]] longitudes_deg = 0. + storm_object_table_one_track[ tracking_utils.CENTROID_LONGITUDE_COLUMN ].values[[0, -1]] x_coords = _lengthen_segment( latitudes_deg=latitudes_deg, longitudes_deg=longitudes_deg, basemap_object=basemap_object )[0] x_coords = None if x_coords is not None: this_storm_object_table = storm_object_table_one_track.iloc[[0, -1]] _plot_one_track_segment( storm_object_table_one_segment=this_storm_object_table, axes_object=axes_object, basemap_object=basemap_object, line_width=line_width, line_colour=line_colour, colour_map_object=colour_map_object, colour_norm_object=colour_norm_object) return for i in range(num_storm_objects): successor_rows = temporal_tracking.find_immediate_successors( storm_object_table=storm_object_table_one_track, target_row=i ) for j in successor_rows: this_storm_object_table = storm_object_table_one_track.iloc[[i, j]] _plot_one_track_segment( storm_object_table_one_segment=this_storm_object_table, axes_object=axes_object, basemap_object=basemap_object, line_width=line_width, line_colour=line_colour, colour_map_object=colour_map_object, colour_norm_object=colour_norm_object)
def plot_storm_tracks(storm_object_table, axes_object, basemap_object, colour_map_object='random', line_colour=DEFAULT_TRACK_COLOUR, line_width=DEFAULT_TRACK_WIDTH, start_marker_type=DEFAULT_START_MARKER_TYPE, end_marker_type=DEFAULT_END_MARKER_TYPE, start_marker_size=DEFAULT_START_MARKER_SIZE, end_marker_size=DEFAULT_END_MARKER_SIZE): """Plots one or more storm tracks on the same map. :param storm_object_table: See doc for `plot_storm_outlines`. :param axes_object: Same. :param basemap_object: Same. :param colour_map_object: There are 3 cases. If "random", each track will be plotted in a random colour from `get_storm_track_colours`. If None, each track will be plotted in `line_colour` (the next input arg). If real colour map (instance of `matplotlib.pyplot.cm`), track segments will be coloured by time, according to this colour map. :param line_colour: [used only if `colour_map_object is None`] length-3 numpy array with (R, G, B). Will be used for all tracks. :param line_width: Width of each storm track. :param start_marker_type: Marker type for beginning of track (in any format accepted by `matplotlib.lines`). If `start_marker_type is None`, markers will not be used to show beginning of each track. :param end_marker_type: Same but for end of track. :param start_marker_size: Size of each start-point marker. :param end_marker_size: Size of each end-point marker. """ plot_start_markers = start_marker_type is not None plot_end_markers = end_marker_type is not None if start_marker_type is None: start_marker_type = DEFAULT_START_MARKER_TYPE start_marker_size = DEFAULT_START_MARKER_SIZE if end_marker_type is None: end_marker_type = DEFAULT_END_MARKER_TYPE end_marker_size = DEFAULT_END_MARKER_SIZE x_coords_metres, y_coords_metres = basemap_object( storm_object_table[tracking_utils.CENTROID_LONGITUDE_COLUMN].values, storm_object_table[tracking_utils.CENTROID_LATITUDE_COLUMN].values) storm_object_table = storm_object_table.assign( **{ tracking_utils.CENTROID_X_COLUMN: x_coords_metres, tracking_utils.CENTROID_Y_COLUMN: y_coords_metres }) rgb_matrix = None num_colours = None colour_norm_object = None if colour_map_object is None: error_checking.assert_is_numpy_array(line_colour, exact_dimensions=numpy.array( [3], dtype=int)) rgb_matrix = numpy.reshape(line_colour, (1, 3)) num_colours = rgb_matrix.shape[0] elif colour_map_object == 'random': rgb_matrix = get_storm_track_colours() num_colours = rgb_matrix.shape[0] colour_map_object = None else: first_time_unix_sec = numpy.min( storm_object_table[tracking_utils.VALID_TIME_COLUMN].values) last_time_unix_sec = numpy.max( storm_object_table[tracking_utils.VALID_TIME_COLUMN].values) colour_norm_object = pyplot.Normalize(first_time_unix_sec, last_time_unix_sec) track_primary_id_strings, object_to_track_indices = numpy.unique( storm_object_table[tracking_utils.PRIMARY_ID_COLUMN].values, return_inverse=True) num_tracks = len(track_primary_id_strings) for k in range(num_tracks): if colour_map_object is None: this_colour = rgb_matrix[numpy.mod(k, num_colours), :] this_colour = plotting_utils.colour_from_numpy_to_tuple( this_colour) else: this_colour = None these_object_indices = numpy.where(object_to_track_indices == k)[0] for i in these_object_indices: these_next_indices = temporal_tracking.find_immediate_successors( storm_object_table=storm_object_table, target_row=i) # if len(these_next_indices) > 1: # axes_object.text( # storm_object_table[ # tracking_utils.CENTROID_X_COLUMN].values[i], # storm_object_table[ # tracking_utils.CENTROID_Y_COLUMN].values[i], # '{0:d}-WAY SPLIT'.format(len(these_next_indices)), # fontsize=12, color='k', # horizontalalignment='left', verticalalignment='top') for j in these_next_indices: these_x_coords_metres = storm_object_table[ tracking_utils.CENTROID_X_COLUMN].values[[i, j]] these_y_coords_metres = storm_object_table[ tracking_utils.CENTROID_Y_COLUMN].values[[i, j]] if colour_map_object is None: axes_object.plot(these_x_coords_metres, these_y_coords_metres, color=this_colour, linestyle='solid', linewidth=line_width) else: this_point_matrix = numpy.array( [these_x_coords_metres, these_y_coords_metres]).T.reshape(-1, 1, 2) this_segment_matrix = numpy.concatenate( [this_point_matrix[:-1], this_point_matrix[1:]], axis=1) this_time_unix_sec = numpy.mean(storm_object_table[ tracking_utils.VALID_TIME_COLUMN].values[[i, j]]) this_line_collection_object = LineCollection( this_segment_matrix, cmap=colour_map_object, norm=colour_norm_object) this_line_collection_object.set_array( numpy.array([this_time_unix_sec])) this_line_collection_object.set_linewidth(line_width) axes_object.add_collection(this_line_collection_object) these_prev_indices = temporal_tracking.find_immediate_predecessors( storm_object_table=storm_object_table, target_row=i) # if len(these_prev_indices) > 1: # axes_object.text( # storm_object_table[ # tracking_utils.CENTROID_X_COLUMN].values[i], # storm_object_table[ # tracking_utils.CENTROID_Y_COLUMN].values[i], # '{0:d}-WAY MERGER'.format(len(these_prev_indices)), # fontsize=12, color='k', # horizontalalignment='left', verticalalignment='top') plot_this_start_marker = ((plot_start_markers and len(these_prev_indices) == 0) or len(these_object_indices) == 1) if plot_this_start_marker: if colour_map_object is not None: this_colour = colour_map_object( colour_norm_object(storm_object_table[ tracking_utils.VALID_TIME_COLUMN].values[i])) if start_marker_type == 'x': this_edge_width = 2 else: this_edge_width = 1 axes_object.plot( storm_object_table[ tracking_utils.CENTROID_X_COLUMN].values[i], storm_object_table[ tracking_utils.CENTROID_Y_COLUMN].values[i], linestyle='None', marker=start_marker_type, markerfacecolor=this_colour, markeredgecolor=this_colour, markersize=start_marker_size, markeredgewidth=this_edge_width) plot_this_end_marker = ((plot_end_markers and len(these_next_indices) == 0) or len(these_object_indices) == 1) if plot_this_end_marker: if colour_map_object is not None: this_colour = colour_map_object( colour_norm_object(storm_object_table[ tracking_utils.VALID_TIME_COLUMN].values[i])) if end_marker_type == 'x': this_edge_width = 2 else: this_edge_width = 1 axes_object.plot( storm_object_table[ tracking_utils.CENTROID_X_COLUMN].values[i], storm_object_table[ tracking_utils.CENTROID_Y_COLUMN].values[i], linestyle='None', marker=end_marker_type, markerfacecolor=this_colour, markeredgecolor=this_colour, markersize=end_marker_size, markeredgewidth=this_edge_width) if colour_map_object is None: return min_plot_latitude_deg = basemap_object.llcrnrlat max_plot_latitude_deg = basemap_object.urcrnrlat min_plot_longitude_deg = basemap_object.llcrnrlon max_plot_longitude_deg = basemap_object.urcrnrlon latitude_range_deg = max_plot_latitude_deg - min_plot_latitude_deg longitude_range_deg = max_plot_longitude_deg - min_plot_longitude_deg if latitude_range_deg > longitude_range_deg: orientation_string = 'vertical' else: orientation_string = 'horizontal' colour_bar_object = plotting_utils.plot_linear_colour_bar( axes_object_or_matrix=axes_object, data_matrix=storm_object_table[ tracking_utils.VALID_TIME_COLUMN].values, colour_map_object=colour_map_object, min_value=colour_norm_object.vmin, max_value=colour_norm_object.vmax, orientation_string=orientation_string, extend_min=False, extend_max=False, fraction_of_axis_length=0.9, font_size=COLOUR_BAR_FONT_SIZE) if orientation_string == 'horizontal': tick_values = colour_bar_object.ax.get_xticks() else: tick_values = colour_bar_object.ax.get_yticks() tick_times_unix_sec = numpy.round( colour_norm_object.inverse(tick_values)).astype(int) slope_sec_per_sec = (float(last_time_unix_sec - first_time_unix_sec) / (tick_times_unix_sec[-1] - tick_times_unix_sec[0])) tick_times_unix_sec = numpy.round( first_time_unix_sec + slope_sec_per_sec * (tick_times_unix_sec - tick_times_unix_sec[0])).astype(int) tick_time_strings = [ time_conversion.unix_sec_to_string(t, '%Y-%m-%d-%H%M%S') for t in tick_times_unix_sec ] print(tick_time_strings) tick_time_strings = [ time_conversion.unix_sec_to_string(t, COLOUR_BAR_TIME_FORMAT) for t in tick_times_unix_sec ] print(tick_time_strings) colour_bar_object.set_ticks(tick_values) colour_bar_object.set_ticklabels(tick_time_strings)