#file = 'pp_01_test.dat_graph' #file = 'polypep_test.dat_graph' #file = 'C8H16-isomers_test.dat_graph' file = 'benzamide_conformers-0_test.dat_graph' file2 = 'benzamide_conformersPM6-0_test.dat_graph' #file = 'pentadecane_test.dat_graph' #file2 = 'pentadecanePM6_test.dat_graph' #file = 'retinolconformer_test.dat_graph' #file2 = 'retinolconformerPM6_test.dat_graph' #file = 'atazanavir_AM1_CLN_test.dat_graph' natm = 16 prob = 1.0 data1, data2 = gt.getfltsfromfileprob('/home/' + user + dir + file, ' ', [1], [2], prob) data2, data3 = gt.getfltsfromfileprob('/home/' + user + dir + file2, ' ', [1], [2], prob) font = {'family': 'Bitstream Vera Sans', 'weight': 'normal', 'size': 10} plt.rc('font', **font) fig, axes = plt.subplots(nrows=1, ncols=2) #im1 = graphEdiff2D(axes.flat[0], data1, data2, 'Top left: ANN - c07b\nBottom right: wB97x/6-31g*') im1 = graphEdiff2D(axes.flat[0], data1, data2, 'Top left: PM6\nBottom right: wB97x/6-31g*') im2 = graphEdiffDelta2D(axes.flat[1], data1, data2, natm) th = fig.suptitle(
#file2 = 'polypepPM6_test.dat_graph' #file = 'C8H16-isomers_test.dat_graph' #file2 = 'C8H16-isomersPM6_test.dat_graph' #file = 'benzamide_conformers-0_test.dat_graph' #file2 = 'benzamide_conformersPM6-0_test.dat_graph' #file = 'pentadecane_test.dat_graph' #file2 = 'pentadecanePM6_test.dat_graph' file = 'retinolconformer_test.dat_graph' #file2 = 'retinolconformerPM6_test.dat_graph' #file = 'atazanavir_AM1_CLN_test.dat_graph' natm = 51 prob = 1.0 LOT1data, ANNdata1 = gt.getfltsfromfileprob('/home/' + user + dir1 + file, ' ', [1], [2], prob) LOT2data, ANNdata2 = gt.getfltsfromfileprob('/home/' + user + dir2 + file, ' ', [1], [2], prob) font = {'family': 'Bitstream Vera Sans', 'weight': 'normal', 'size': 10} plt.rc('font', **font) fig, axes = plt.subplots(nrows=2, ncols=2) im1 = graphEdiff2D(axes.flat[0], LOT1data, ANNdata1, 'Top left: ANN - c08b\nBottom right: wB97x/6-31g*') im2 = graphEdiffDelta2D(axes.flat[1], LOT1data, ANNdata1, natm) im3 = graphEdiff2D(axes.flat[2], LOT2data, ANNdata2, 'Top left: ANN - c07b\nBottom right: wB97x/6-31g*') im4 = graphEdiffDelta2D(axes.flat[3], LOT2data, ANNdata2, natm)
# file = 'pp_01_test.dat_graph' # file = 'polypep_test.dat_graph' # file = 'C8H16-isomers_test.dat_graph' file = "benzamide_conformers-0_test.dat_graph" file2 = "benzamide_conformersPM6-0_test.dat_graph" # file = 'pentadecane_test.dat_graph' # file2 = 'pentadecanePM6_test.dat_graph' # file = 'retinolconformer_test.dat_graph' # file2 = 'retinolconformerPM6_test.dat_graph' # file = 'atazanavir_AM1_CLN_test.dat_graph' natm = 16 prob = 1.0 data1, data2 = gt.getfltsfromfileprob("/home/" + user + dir + file, " ", [1], [2], prob) data2, data3 = gt.getfltsfromfileprob("/home/" + user + dir + file2, " ", [1], [2], prob) font = {"family": "Bitstream Vera Sans", "weight": "normal", "size": 10} plt.rc("font", **font) fig, axes = plt.subplots(nrows=1, ncols=2) # im1 = graphEdiff2D(axes.flat[0], data1, data2, 'Top left: ANN - c07b\nBottom right: wB97x/6-31g*') im1 = graphEdiff2D(axes.flat[0], data1, data2, "Top left: PM6\nBottom right: wB97x/6-31g*") im2 = graphEdiffDelta2D(axes.flat[1], data1, data2, natm) th = fig.suptitle("300K norm. mode generated conformers of Benzamide\n(Rcr=4.5$\AA$)") # th = fig.suptitle('300K norm. mode generated conformers of\nH-Gly-Pro-Hyp-Gly-Ala-Gly-OH') # th = fig.suptitle('Linearly interpolated energy difference\nbetween conformers of Retinol')