def prepare(self):
job = JobObject(self.si)
job.setUniqueJobname("echo_job1")
job.setCommandline('echo "Hello World"')
job.createJob()
self.job = job
def prepare(self):
job = JobObject(self.si)
job.setUniqueJobname("echo_job1")
job.setCommandline("echo \"Hello World\"")
job.createJob()
self.job = job
def prepare(self):
job = JobObject(self.si)
job.setUniqueJobname("echo_job1")
job.setCommandline("echo \"Hello World\"")
job.addInputFileUrl("/home/markus/tmp/text0.txt")
job.createJob()
self.job = job
def prepare(self):
job = JobObject(self.si)
job.setUniqueJobname("echo_job1")
job.setCommandline('echo "Hello World"')
job.addInputFileUrl("/home/markus/tmp/text0.txt")
job.createJob()
self.job = job
def prepare(self):
job = JobObject(self.si)
job.setUniqueJobname("echo_job1")
job.setCommandline('echo "Hello World"')
job.addInputFileUrl("/home/markus/tmp/46mbInput0.bin")
job.setApplication(Constants.GENERIC_APPLICATION_NAME)
job.setSubmissionLocation(self.subLoc)
job.createJob()
self.job = job
def prepare(self):
job = JobObject(self.si)
job.setUniqueJobname("echo_job1")
job.setCommandline("echo \"Hello World\"")
job.addInputFileUrl("/home/markus/tmp/46mbInput0.bin")
job.setApplication(Constants.GENERIC_APPLICATION_NAME)
job.setSubmissionLocation(self.subLoc)
job.createJob()
self.job = job
def prepare(self):
job = JobObject(self.si);
job.setUniqueJobname("echo_job1")
job.setCommandline("echo \"Hello World\"")
job.addInputFileUrl("gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text0.txt");
job.addInputFileUrl("gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text1.txt");
job.addInputFileUrl("gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text2.txt");
job.addInputFileUrl("gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text3.txt");
job.addInputFileUrl("gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text4.txt");
job.setApplication(Constants.GENERIC_APPLICATION_NAME)
job.setSubmissionLocation(self.subLoc)
job.createJob()
self.job = job
class simpleStageJob(action):
def __init__(self, si, subLoc=defaultSubLoc):
super(simpleStageJob, self).__init__(si, subLoc)
self.job = JobObject(self.si)
self.job.setCommandline('echo "hello world"')
self.job.setApplication(Constants.GENERIC_APPLICATION_NAME)
self.job.setSubmissionLocation(self.subLoc)
def prepare(self):
self.job.setUniqueJobname(self.name())
self.job.createJob()
def execute(self):
self.job.submitJob()
class simpleStageJob(action):
def __init__(self, si, subLoc=defaultSubLoc):
super(simpleStageJob, self).__init__(si, subLoc)
self.job = JobObject(self.si)
self.job.setCommandline("echo \"hello world\"")
self.job.setApplication(Constants.GENERIC_APPLICATION_NAME)
self.job.setSubmissionLocation(self.subLoc)
def prepare(self):
self.job.setUniqueJobname(self.name())
self.job.createJob()
def execute(self):
self.job.submitJob()
def prepare(self):
job = JobObject(self.si)
job.setUniqueJobname("echo_job1")
job.setCommandline("echo \"Hello World\"")
job.addInputFileUrl(
"gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text0.txt")
job.addInputFileUrl(
"gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text1.txt")
job.addInputFileUrl(
"gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text2.txt")
job.addInputFileUrl(
"gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text3.txt")
job.addInputFileUrl(
"gsiftp://ng2.canterbury.ac.nz/home/gridcloud061/tmp/text4.txt")
job.setApplication(Constants.GENERIC_APPLICATION_NAME)
job.setSubmissionLocation(self.subLoc)
job.createJob()
self.job = job
def submit(self):
if self.jobs:
print 'There is already a run with the name "'+self.jobname+'". Exiting...'
sys.exit(1)
# uploading input file once, so we don't need to do it for every job again and again
fm.cp(self.filepath, 'gsiftp://pan.nesi.org.nz/~/inputfiles/'+self.jobname, True)
for i in range(0,self.runs):
# create the job object
job = JobObject(si);
# set a unique jobname
number = str(i+1).zfill(4)
job.setUniqueJobname(self.jobname+"_run_"+number)
# set the commandline that needs to be executed
job.setCommandline(megabeast_path+' '+remote_home_dir+'/inputfiles/'+self.jobname+'/'+self.filename)
job.setSubmissionLocation('pan:pan.nesi.org.nz')
job.setCpus(self.cpus)
job.setWalltime(self.walltime)
job.setMemory(self.memory)
job.setApplication('UltraBEAST')
job.setApplicationVersion('0.1')
#job.addInputFileUrl(self.filepath)
# create the job on the backend and specify the VO to use
temp_jobname = job.createJob("/nz/nesi")
print "created job: '"+temp_jobname+"', submitting..."
# submit the job
job.submitJob()
print "submission finished: " + temp_jobname
from grisu.frontend.control.login import LoginManager
from grisu.frontend.model.job import JobObject
si = LoginManager.loginCommandline("BeSTGRID-DEV")
print 'Logged in.'
job = JobObject(si)
job.setUniqueJobname("cat_job", si)
job.setCommandline("cat text0.txt")
job.addInputFileUrl('/home/markus/tmp/text0.txt')
job.createJob("/nz/nesi")
#job.setSubmissionLocation('[email protected]:ng2.auckland.ac.nz')
job.submitJob()
print 'Job submitted.'
job.waitForJobToFinish(10)
print 'Job finished. Status: ' + job.getStatusString(False)
print "Stdout: " + job.getStdOutContent()
print "Stderr: " + job.getStdErrContent()
job.kill(True)
@author: markus
'''
from grisu.frontend.control.login import LoginManager
from grisu.frontend.model.job import JobObject
import sys
HttpProxyManager.useSystemHttpProxy()
si = LoginManager.loginCommandline("bestgrid")
# create the job object
job = JobObject(si)
# set a unique jobname
job.setUniqueJobname("echo_job1")
# set the commandline that needs to be executed
job.setCommandline("echo \"Hello World\"")
# create the job on the backend and specify the VO to use
job.createJob("/nz/nesi")
# submit the job
job.submitJob()
# this waits until the job is finished. Checks every 10 seconds (which would be too often for a real job)
finished = job.waitForJobToFinish(10)
if not finished:
print "not finished yet."
# kill the job on the backend anyway
from grisu.frontend.model.job import JobObject
import sys
si = LoginManager.loginCommandline("Local")
folder = "/home/markus/test/batch/"
original = folder + "original.txt"
jobnames = []
for i in range(10):
file = folder + "test" + str(i) + ".txt"
job = JobObject(si)
job.setUniqueJobname("diff_" + str(i))
job.setApplication("UnixCommands")
job.setCommandline("diff original.txt test" + str(i) + ".txt")
job.createJob("/ARCS/BeSTGRID")
job.addInputFileUrl(file)
job.addInputFileUrl(original)
job.submitJob()
jobnames.append(job.getJobname())
for jobname in jobnames:
finished = job.waitForJobToFinish(10)
print "Job: " + jobname
from grisu.frontend.model.job import JobObject
import sys
si = LoginManager.loginCommandline("Local")
folder = '/home/markus/test/batch/'
original = folder + 'original.txt'
jobnames = []
for i in range(10):
file = folder+'test'+str(i)+'.txt'
job = JobObject(si);
job.setUniqueJobname('diff_'+str(i))
job.setApplication('UnixCommands')
job.setCommandline('diff original.txt test'+str(i)+'.txt')
job.createJob("/ARCS/BeSTGRID")
job.addInputFileUrl(file)
job.addInputFileUrl(original)
job.submitJob()
jobnames.append(job.getJobname())
for jobname in jobnames:
finished = job.waitForJobToFinish(10)
print 'Job: '+jobname
'''
@author: markus
'''
from grisu.frontend.control.login import LoginManager
from grisu.frontend.model.job import JobObject
import sys
si = LoginManager.loginCommandline("Local")
folder = '/home/markus/test/batchWrap/'
original = folder + 'original.txt'
script = folder + 'wrap.sh'
job = JobObject(si);
job.setUniqueJobname('diff_wrap')
job.setApplication('UnixCommands')
job.setCommandline('sh wrap.sh 0 9')
job.addInputFileUrl(original)
job.addInputFileUrl(script)
for i in range(10):
file = folder+'test'+str(i)+'.txt'
job.addInputFileUrl(file)
job.createJob("/ARCS/BeSTGRID")
job.submitJob()
finished = job.waitForJobToFinish(10)
Created on 17/11/2009
@author: markus
'''
from grisu.frontend.control.login import LoginManager
from grisu.frontend.model.job import JobObject
import sys
si = LoginManager.loginCommandline()
print 'Creating job...'
# create the job object
job = JobObject(si);
# set a unique jobname
job.setUniqueJobname("echo_job1")
print 'Set jobname to: '+ job.getJobname()
# set the name of the application like it is published in mds. "generic" means not to use mds for the lookup.
job.setApplication("generic")
# since we are using a "generic" job, we need to specify a submission location. I'll make that easier later on...
job.setSubmissionLocation("dque@edda-m:ng2.vpac.org")
# set the commandline that needs to be executed
job.setCommandline("echo \"Hello World\"")
job.addInputFileUrl('/home/markus/test/singleJobFile_0.txt');
# create the job on the backend and specify the VO to use
job.createJob("/ARCS/NGAdmin")
print 'Submitting job...'
# submit the job
from grisu.frontend.control.login import LoginManager
from grisu.frontend.model.job import JobObject
si = LoginManager.loginCommandline("BeSTGRID-DEV")
print "Logged in."
job = JobObject(si)
job.setUniqueJobname("cat_job", si)
job.setCommandline("cat text0.txt")
job.addInputFileUrl("/home/markus/tmp/text0.txt")
job.createJob("/nz/nesi")
# job.setSubmissionLocation('[email protected]:ng2.auckland.ac.nz')
job.submitJob()
print "Job submitted."
job.waitForJobToFinish(10)
print "Job finished. Status: " + job.getStatusString(False)
print "Stdout: " + job.getStdOutContent()
print "Stderr: " + job.getStdErrContent()
job.kill(True)
'''
@author: markus
'''
from grisu.frontend.control.login import LoginManager
from grisu.frontend.model.job import JobObject
import sys
si = LoginManager.loginCommandline("Local")
folder = '/home/markus/test/batchWrap/'
original = folder + 'original.txt'
script = folder + 'wrap.sh'
job = JobObject(si)
job.setUniqueJobname('diff_wrap')
job.setApplication('UnixCommands')
job.setCommandline('sh wrap.sh 0 9')
job.addInputFileUrl(original)
job.addInputFileUrl(script)
for i in range(10):
file = folder + 'test' + str(i) + '.txt'
job.addInputFileUrl(file)
job.createJob("/ARCS/BeSTGRID")
job.submitJob()
finished = job.waitForJobToFinish(10)
print 'Job: ' + job.getJobname()