def get(self, uuidname):
checkplot = CheckUUIDPlot(
gsxa_uuid=uuidname,
name_uuid="gsea_uuid",
purpose="paenplot",
rplot="paen_plot.R",
precol="preanalysised",
gsxacol="preanalysised_enrichment",
)
res = checkplot.check_run()
if res["run"]:
checkplot.plot()
return {"paenplotuuid": res["uuid"], "paentableuuid": uuidname}
def get(self, uuidname):
checkplot = CheckUUIDPlot(
gsxa_uuid=uuidname,
name_uuid="gsva_uuid",
purpose="cnvsurvivalgenesetplot",
rplot="cnv_geneset_survival_profile.R",
precol="preanalysised",
gsxacol="preanalysised_cnvgeneset",
)
res = checkplot.check_run()
if res["run"]:
checkplot.plot()
return {"cnvsurvivalgenesetplotuuid": res["uuid"], "cnvsurvivalgenesettableuuid": uuidname}
def get(self, uuidname):
checkplot = CheckUUIDPlot(
gsxa_uuid=uuidname,
name_uuid="gsva_uuid",
purpose="exprgsvaplot",
rplot="expr_gsva_plot.R",
precol="preanalysised",
gsxacol="preanalysised_gsva",
)
res = checkplot.check_run()
if res["run"]:
checkplot.plot()
return {"exprgsvaplotuuid": res["uuid"], "exprgsvatableuuid": uuidname}
def get(self, uuidname):
checkplot = CheckUUIDPlot(
gsxa_uuid=uuidname,
name_uuid="gsva_uuid",
purpose="snvimmunegenesetcorplot",
rplot="snv_geneset_immune_profile.R",
precol="preanalysised",
gsxacol="preanalysised_snvgeneset",
)
res = checkplot.check_run()
if res["run"]:
checkplot.plot()
return {
"snvimmunegenesetcorplotuuid": res["uuid"],
"snvimmunegenesetcortableuuid": uuidname
}