def getTrackView(self, region): allowOverlaps = self._trackFormatReq.allowOverlaps() borderHandling = self._trackFormatReq.borderHandling() assert (allowOverlaps is not None) assert (borderHandling is not None) origTrackView = self._getRawTrackView(region, borderHandling, allowOverlaps) if self.formatConverters is None: self.formatConverters = getFormatConverters( origTrackView.trackFormat, self._trackFormatReq) if self.formatConverters == []: raise IncompatibleTracksError(prettyPrintTrackName(self.trackName) + ' with format: '\ + str(origTrackView.trackFormat) + ('(' + origTrackView.trackFormat._val + ')' if origTrackView.trackFormat._val else '') + \ ' does not satisfy ' + str(self._trackFormatReq)) if not self.formatConverters[0].canHandle(origTrackView.trackFormat, self._trackFormatReq): raise IncompatibleTracksError(getClassName(self.formatConverters[0]) +\ ' does not support conversion from ' + str(origTrackView.trackFormat) + \ ' to ' + str(self._trackFormatReq)) return self.formatConverters[0].convert(origTrackView)
def getTrackView(self, region): if self.formatConverters is None: self.formatConverters = getFormatConverters(self._tv.trackFormat, self._trackFormatReq) if self.formatConverters == []: raise IncompatibleTracksError('Track with format: '\ + str(self._tv.trackFormat) + ('(' + self._tv.trackFormat._val + ')' if self._tv.trackFormat._val else '') + \ ' does not satisfy ' + str(self._trackFormatReq)) if not self.formatConverters[0].canHandle(self._tv.trackFormat, self._trackFormatReq): raise IncompatibleTracksError(getClassName(self.formatConverters[0]) +\ ' does not support conversion from ' + str(self._tv.trackFormat) + \ ' to ' + str(self._trackFormatReq)) return self.formatConverters[0].convert(self._tv[region.start - self._tv.genomeAnchor.start : \ region.end - self._tv.genomeAnchor.start])
def getTrackView(self, region): if self.formatConverters is None: self.formatConverters = getFormatConverters( self._tv.trackFormat, self._trackFormatReq) if self.formatConverters == []: raise IncompatibleTracksError('Track with format: '\ + str(self._tv.trackFormat) + ('(' + self._tv.trackFormat._val + ')' if self._tv.trackFormat._val else '') + \ ' does not satisfy ' + str(self._trackFormatReq)) if not self.formatConverters[0].canHandle(self._tv.trackFormat, self._trackFormatReq): raise IncompatibleTracksError(getClassName(self.formatConverters[0]) +\ ' does not support conversion from ' + str(self._tv.trackFormat) + \ ' to ' + str(self._trackFormatReq)) return self.formatConverters[0].convert(self._tv[region.start - self._tv.genomeAnchor.start : \ region.end - self._tv.genomeAnchor.start])
def getTrackView(self, region): allowOverlaps = self._trackFormatReq.allowOverlaps() borderHandling = self._trackFormatReq.borderHandling() assert(allowOverlaps is not None) assert(borderHandling is not None) origTrackView = self._getRawTrackView(region, borderHandling, allowOverlaps) if self.formatConverters is None: self.formatConverters = getFormatConverters(origTrackView.trackFormat, self._trackFormatReq) if self.formatConverters == []: raise IncompatibleTracksError(prettyPrintTrackName(self.trackName) + ' with format: '\ + str(origTrackView.trackFormat) + ('(' + origTrackView.trackFormat._val + ')' if origTrackView.trackFormat._val else '') + \ ' does not satisfy ' + str(self._trackFormatReq)) if not self.formatConverters[0].canHandle(origTrackView.trackFormat, self._trackFormatReq): raise IncompatibleTracksError(getClassName(self.formatConverters[0]) +\ ' does not support conversion from ' + str(origTrackView.trackFormat) + \ ' to ' + str(self._trackFormatReq)) return self.formatConverters[0].convert(origTrackView)