def showInformation(message):
"""
shows a information dialog with given message
"""
guidata.qapplication().beep()
QMessageBox.information(None, "Information", message)
def showWarning(message):
"""
shows a warning dialog with given message
"""
guidata.qapplication().beep()
QMessageBox.warning(None, "Warning", message)
def show(self):
""" opens the constructed dialog.
In order to do so we construct sublcass of DataSet on the fly.
the docstring of the class is the title of the dialog,
class level attributes are instances of sublcasses of
DataItem, eg IntItem.
For more info see the docs of guidata how those classes
are declared to get the wanted dialog.
"""
import guidata
app = guidata.qapplication()
# put the class level attributes in a dict
attributes = dict(zip(self.fieldNames, self.items))
# construct class "Dialog" which is a sublcass of "dt.DataSet"
# with the given attributes:
clz = type("Dialog", (dt.DataSet, ), attributes)
# as said: the docstring is rendered as the dialogues title:
clz.__doc__ = self.title + "\n" + "\n".join(self.instructions)
# open dialog now !!!
instance = clz()
if instance.edit() == 0:
raise Exception("dialog aborted by user")
# return the values a tuple according to the order of the
# declared input widgets:
result = [getattr(instance, name) for name in self.fieldNames]
result = tuple(result)
if len(result) == 1:
result = result[0]
return result
def showInformation(message, title="Information"):
"""
shows a information dialog with given message
"""
app = guidata.qapplication()
QMessageBox.information(None, title, message)
def showWarning(message, title="Warning"):
"""
shows a warning dialog with given message
"""
app = guidata.qapplication()
QMessageBox.warning(None, title, message)
def begin():
app = qapplication()
global window
window = MainWindow()
window.showMaximized()
print('ok')
return (app, window)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
from numpy import linspace, sin, trapz
x = linspace(-10, 10, 1000)
y = sin(sin(sin(x)))
curve = make.curve(x, y, "ab", "b")
range = make.range(-2, 2)
disp0 = make.range_info_label(range,
"BR",
"x = %.1f ± %.1f cm",
title="Range infos")
disp1 = make.computation(range, "BL", "trapz=%g", curve,
lambda x, y: trapz(y, x))
disp2 = make.computations(
range,
"TL",
[
(curve, "min=%.5f", lambda x, y: y.min()),
(curve, "max=%.5f", lambda x, y: y.max()),
(curve, "avg=%.5f", lambda x, y: y.mean()),
],
)
legend = make.legend("TR")
plot(curve, range, disp0, disp1, disp2, legend)
def save(self, fname, format, draft):
if is_text_string(fname):
if format == "pdf":
self.app = guidata.qapplication()
if draft:
mode = QPrinter.ScreenResolution
else:
mode = QPrinter.HighResolution
printer = QPrinter(mode)
printer.setOutputFormat(QPrinter.PdfFormat)
printer.setOrientation(QPrinter.Landscape)
printer.setOutputFileName(fname)
printer.setCreator('guiqwt.pyplot')
self.print_(printer)
else:
if self.win is None:
self.show()
if PYQT5:
pixmap = self.win.centralWidget().grab()
else:
pixmap = QPixmap.grabWidget(self.win.centralWidget())
pixmap.save(fname, format.upper())
else:
# Buffer
fd = fname
assert hasattr(fd, 'write'), "object is not file-like as expected"
if self.win is None:
self.show()
pixmap = QPixmap.grabWidget(self.win.centralWidget())
buff = QBuffer()
buff.open(QIODevice.ReadWrite)
pixmap.save(buff, format.upper())
fd.write(buff.data())
buff.close()
fd.seek(0)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
filename = osp.join(osp.dirname(__file__), "brain.png")
image = make.image(filename=filename, title="Original", colormap="gray")
win = ImageDialog(
edit=False,
toolbar=True,
wintitle="Contrast test",
options=dict(show_contrast=True),
)
plot = win.get_plot()
plot.add_item(image)
win.resize(600, 600)
win.show()
try:
plot.save_widget("contrast.png")
except IOError:
# Skipping this part of the test
# because user has no write permission on current directory
pass
win.exec_()
def run():
"""Run benchmark"""
# Print informations banner
from guidata import qt
import guiqwt
qt_lib = {'pyqt': 'PyQt4', 'pyqt5': 'PyQt5', 'pyside': 'PySide'}[qt.API]
title = "guiqwt plot benchmark [%s v%s (Qt v%s), guiqwt v%s]" %\
(qt_lib, qt.__version__, qt.QtCore.__version__, guiqwt.__version__)
print(title)
print('-' * len(title))
print()
import guidata
app = guidata.qapplication()
# Run benchmarks
close = True
for benchmark in (
CurveBM('Simple curve', 5e6),
CurveBM('Curve with markers', 2e5, marker="Ellipse",
markersize=10),
CurveBM('Curve with sticks', 1e6, curvestyle="Sticks"),
ErrorBarBM('Error bar curve (vertical bars only)', 1e4),
ErrorBarBM('Error bar curve (horizontal and vertical bars)',
1e4,
dx=True),
HistogramBM('Simple histogram', 1e6, bins=1e5),
PColorBM('Polar pcolor', 1e3),
ImageBM('Simple image', 7e3, interpolation='antialiasing'),
):
benchmark.start(close=close)
if not close:
app.exec_()
def do_mainloop(mainloop):
global _current_fig
if not _current_fig:
print("Warning: must create a figure before showing it", file=sys.stderr)
elif mainloop:
app = guidata.qapplication()
app.exec_()
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
imshow(IMGFILE)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
from numpy import linspace, sin
mydescr = N.dtype([('Zeit', 'float'), ('T1', 'float'), ('T2', 'float'), ('T3', 'float'),('T4', 'float'),('T5', 'float'), ('T6', 'float'), ('T7', 'float'),('T8', 'float')])
myrecarray = read_array('test.ASC', mydescr)
x = myrecarray['Zeit']
y = savitzky_golay(myrecarray['T1'], window_size=131, order=3)
y2 = savitzky_golay(myrecarray['T2'], window_size=131, order=3)
y3 = savitzky_golay(myrecarray['T3'], window_size=131, order=3)
#x = linspace(-10, 10, 200)
#dy = x/100.
#y = sin(sin(sin(x)))
#x2 = linspace(-10, 10, 20)
#y2 = sin(sin(sin(x2)))
plot(make.curve(x, y, color="b"),
make.curve(x, y2, color="g",),
make.curve(x, y3, color="r"),
make.label("Relative position <b>outside</b>",
(x[0], y[0]), (-10, -10), "BR"),
make.label("Relative position <i>inside</i>",
(x[0], y[0]), (10, 10), "TL"),
make.label("Absolute position", "R", (0,0), "R"),
make.legend("TR"),
)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
from numpy import linspace, sin
x = linspace(-10, 10, 200)
dy = x / 100.0
y = sin(sin(sin(x)))
x2 = linspace(-10, 10, 20)
y2 = sin(sin(sin(x2)))
plot(
[
make.curve(x, y, color="b"),
make.label(
"Relative position <b>outside</b>", (x[0], y[0]), (-10, -10), "BR"
),
],
[
make.curve(x2, y2, color="g"),
],
[
make.curve(x, sin(2 * y), color="r"),
make.label("Relative position <i>inside</i>", (x[0], y[0]), (10, 10), "TL"),
],
[
make.merror(x, y / 2, dy),
make.label("Absolute position", "R", (0, 0), "R"),
make.legend("TR"),
],
)
def showInformation(message, title="Information"):
"""
shows a information dialog with given message
"""
app = guidata.qapplication()
QMessageBox.information(None, title, message)
def show(self):
""" opens the constructed dialog.
In order to d so we construct sublcass of DataSet on the fly.
the docstring of the class is the title of the dialog,
class level attributes are instances of sublcasses of
DataItem, eg IntItem.
For more info see the docs of guidata how those classes
are declared to get the wanted dialog.
"""
import guidata
app = guidata.qapplication()
# put the class level attributes in a dict
attributes = dict(zip(self.fieldNames, self.items))
# construct class "Dialog" which is a sublcass of "dt.DataSet"
# with the given attributes:
clz = type("Dialog", (dt.DataSet,), attributes)
# as said: the docstring is rendered as the dialogues title:
clz.__doc__ = self.title+"\n"+"\n".join(self.instructions)
# open dialog now !!!
instance = clz()
if instance.edit() == 0:
raise Exception("dialog aborted by user")
# return the values a tuple according to the order of the
# declared input widgets:
result = [getattr(instance, name) for name in self.fieldNames]
result = tuple(result)
if len(result) == 1:
result = result[0]
return result
def run():
"""Run benchmark"""
# Print informations banner
from guidata import qt
import guiqwt
qt_lib = {'pyqt': 'PyQt4', 'pyqt5': 'PyQt5', 'pyside': 'PySide'}[qt.API]
title = "guiqwt plot benchmark [%s v%s (Qt v%s), guiqwt v%s]" %\
(qt_lib, qt.__version__, qt.QtCore.__version__, guiqwt.__version__)
print(title)
print('-'*len(title))
print()
import guidata
app = guidata.qapplication()
# Run benchmarks
close = True
for benchmark in (
CurveBM('Simple curve', 5e6),
CurveBM('Curve with markers', 2e5,
marker="Ellipse", markersize=10),
CurveBM('Curve with sticks', 1e6,
curvestyle="Sticks"),
ErrorBarBM('Error bar curve (vertical bars only)', 1e4),
ErrorBarBM('Error bar curve (horizontal and vertical bars)', 1e4,
dx=True),
HistogramBM('Simple histogram', 1e6, bins=1e5),
PColorBM('Polar pcolor', 1e3),
ImageBM('Simple image', 7e3, interpolation='antialiasing'),
):
benchmark.start(close=close)
if not close:
app.exec_()
def guifit(x,
y,
fitfunc,
fitparams,
fitargs=None,
fitkwargs=None,
wintitle=None,
title=None,
xlabel=None,
ylabel=None,
param_cols=1,
auto_fit=True,
winsize=None,
winpos=None):
"""GUI-based curve fitting tool"""
_app = guidata.qapplication()
# win = FitWidget(wintitle=wintitle, toolbar=True,
# param_cols=param_cols, auto_fit=auto_fit,
# options=dict(title=title, xlabel=xlabel, ylabel=ylabel))
win = FitDialog(edit=True,
wintitle=wintitle,
toolbar=True,
param_cols=param_cols,
auto_fit=auto_fit,
options=dict(title=title, xlabel=xlabel, ylabel=ylabel))
win.set_data(x, y, fitfunc, fitparams, fitargs, fitkwargs)
if winsize is not None:
win.resize(*winsize)
if winpos is not None:
win.move(*winpos)
if win.exec_():
return win.get_values()
def do_mainloop(mainloop):
global _current_fig
if not _current_fig:
print("Warning: must create a figure before showing it", file=sys.stderr)
elif mainloop:
app = guidata.qapplication()
app.exec_()
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
imshow(IMGFILE)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
# from numpy import linspace, sin
#x = linspace(-10, 10, 200)
start_rec = 819
num_rec = 10000
x = range(start_rec, start_rec + num_rec)
vname, y = loadBinData('ATOLOG_01R_1.atp', start_rec, num_rec)
plot(make.curve(x, y[0], title=vname[0], color="b"),
make.curve(x, y[1], title=vname[1], color="g"),
#make.curve(x, sin(2*y), color="r"),
#make.merror(x, y/2, dy),
#make.label("Relative position <b>outside</b>",
# (x[0], y[0]), (-10, -10), "BR"),
#make.label("Relative position <i>inside</i>",
# (x[0], y[0]), (10, 10), "TL"),
#make.label("Absolute position", "R", (0,0), "R"),
make.legend("TR"),
#make.marker(position=(5., .8), label_cb=lambda x, y: u"A = %.2f" % x,
# markerstyle="|", movable=False)
)
def change_defaults(self):
""" Allow the user to change the default settings """
# Create QApplication
import guidata
_app = guidata.qapplication()
e = DefaultParameters()
print(e)
if e.edit():
defaults = {
'accLim': e.acc_limit,
'gyrLim': e.gyr_limit,
'dataDir': e.data_dir,
'topColor': e.color_top,
'middleColor': e.color_middle,
'bottomColor': e.color_bottom,
'upper_thresh': e.upper_thresh,
'lower_thresh': e.lower_thresh,
'init_channel': e.init_channel,
'opening_view': e.opening_view
}
settings_file = 'settings.yaml'
with open(settings_file, 'w') as fh:
yaml.dump(defaults, fh)
print(f'New settings saved to {settings_file}')
print(e)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
from numpy import linspace, sin, trapz
x = linspace(-10, 10, 1000)
y = sin(sin(sin(x)))
curve = make.curve(x, y, "ab", "b")
range = make.range(-2, 2)
disp0 = make.range_info_label(range, "BR", "x = %.1f ± %.1f cm", title="Range infos")
disp1 = make.computation(range, "BL", "trapz=%g", curve, lambda x, y: trapz(y, x))
disp2 = make.computations(
range,
"TL",
[
(curve, "min=%.5f", lambda x, y: y.min()),
(curve, "max=%.5f", lambda x, y: y.max()),
(curve, "avg=%.5f", lambda x, y: y.mean()),
],
)
legend = make.legend("TR")
plot(curve, range, disp0, disp1, disp2, legend)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
from numpy import linspace, sin
x = linspace(-10, 10, 200)
dy = x / 100.0
y = sin(sin(sin(x)))
x2 = linspace(-10, 10, 20)
y2 = sin(sin(sin(x2)))
curve2 = make.curve(x2, y2, color="g", curvestyle="Sticks")
curve2.setTitle("toto")
plot(
make.curve(x, y, color="b"),
curve2,
make.curve(x, sin(2 * y), color="r"),
make.merror(x, y / 2, dy),
make.label("Relative position <b>outside</b>", (x[0], y[0]), (-10, -10), "BR"),
make.label("Relative position <i>inside</i>", (x[0], y[0]), (10, 10), "TL"),
make.label("Absolute position", "R", (0, 0), "R"),
make.legend("TR"),
make.marker(position=(5.0, 0.8), label_cb=lambda x, y: "A = %.2f" % x, markerstyle="|", movable=False),
)
def ProgressBar(n_steps, label="", allow_cancel=False, parent=None):
"""
Progressbar context manager for showing progress of workflow to user. Example::
with emzed.gui.ProgressBar(n_steps=100, allow_cancel=True) as handler:
for i in range(100):
# we simulate work of step i
# we update progressbar
handler.update(i, "step %03d" % i)
# we can check if user pressed "Cancel" button and stop our "workflow":
if handler.is_canceled():
break
"""
app = guidata.qapplication()
dlg = QProgressDialog(parent)
dlg.setLabelText(label)
dlg.setAutoClose(False)
dlg.setAutoReset(False)
if allow_cancel:
dlg.setCancelButtonText("Cancel")
dlg.setMaximum(n_steps)
class ProgressBarHandler(object):
def __init__(self, n_steps, dlg):
self._dlg = dlg
self._n_steps = n_steps
self._n = 0
self._canceled = False
dlg.canceled.connect(self._set_canceled)
dlg.setValue(0)
def _set_canceled(self):
self._canceled = True
dlg.close()
def update(self, n, message=None):
app.processEvents()
self._n = n
dlg.setValue(n + 1)
if message is not None:
dlg.setLabelText(message)
dlg.update()
app.processEvents()
def is_canceled(self):
return self._canceled
dlg.activateWindow()
dlg.show()
dlg.raise_()
app.processEvents()
handler = ProgressBarHandler(n_steps, dlg)
yield handler
dlg.close()
def save(self, fname, format, draft):
if is_text_string(fname):
if format == "pdf":
self.app = guidata.qapplication()
if draft:
mode = QPrinter.ScreenResolution
else:
mode = QPrinter.HighResolution
printer = QPrinter(mode)
printer.setOutputFormat(QPrinter.PdfFormat)
printer.setOrientation(QPrinter.Landscape)
printer.setOutputFileName(fname)
printer.setCreator('guiqwt.pyplot')
self.print_(printer)
else:
if self.win is None:
self.show()
if PYQT5:
pixmap = self.win.centralWidget().grab()
else:
pixmap = QPixmap.grabWidget(self.win.centralWidget())
pixmap.save(fname, format.upper())
else:
# Buffer
fd = fname
assert hasattr(fd, 'write'), "object is not file-like as expected"
if self.win is None:
self.show()
pixmap = QPixmap.grabWidget(self.win.centralWidget())
buff = QBuffer()
buff.open(QIODevice.ReadWrite)
pixmap.save(buff, format.upper())
fd.write(buff.data())
buff.close()
fd.seek(0)
def inspectPeakMap(peakmap,
peakmap2=None,
table=None,
modal=True,
parent=None,
rtmin=None,
rtmax=None,
mzmin=None,
mzmax=None):
"""
allows the visual inspection of a peakmap
"""
peakmap = peakmap.cleaned()
if len(peakmap) == 0:
raise Exception("empty peakmap")
app = guidata.qapplication() # singleton !
ok_rows = []
win = PeakMapExplorer(ok_rows, parent=parent)
win.setup(peakmap, peakmap2, table)
if modal:
win.raise_()
win.exec_()
return ok_rows
else:
win.show()
return ok_rows
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
from numpy import linspace, sin
x = linspace(-10, 10, 200)
dy = x / 100.0
y = sin(sin(sin(x)))
x2 = linspace(-10, 10, 20)
y2 = sin(sin(sin(x2)))
curve2 = make.curve(x2, y2, color="g", curvestyle="Sticks")
curve2.setTitle("toto")
plot(
make.curve(x, y, color="b"),
curve2,
make.curve(x, sin(2 * y), color="r"),
make.merror(x, y / 2, dy),
make.label("Relative position <b>outside</b>", (x[0], y[0]),
(-10, -10), "BR"),
make.label("Relative position <i>inside</i>", (x[0], y[0]), (10, 10),
"TL"),
make.label("Absolute position", "R", (0, 0), "R"),
make.legend("TR"),
make.marker(
position=(5.0, 0.8),
label_cb=lambda x, y: "A = %.2f" % x,
markerstyle="|",
movable=False,
),
)
def do_app(): #todo remove app = qapplication() mydialog = MyFilePicker() if mydialog.edit(): print(mydialog.to_string()) mydialog.view() return mydialog.files
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
imshow(*compute_image())
def inspect(what,
offerAbortOption=False,
modal=True,
parent=None,
close_callback=None):
"""
allows the inspection and editing of simple or multiple
tables.
"""
if isinstance(what, (Table, Hdf5TableProxy)):
what = [what]
app = guidata.qapplication() # singleton !
explorer = TableExplorer(what,
offerAbortOption,
parent=parent,
close_callback=close_callback)
if modal:
explorer.raise_()
explorer.exec_()
# partial cleanup
modified = len(explorer.models[0].actions) > 0
del explorer.models
if offerAbortOption:
if explorer.result == 1:
raise Exception("Dialog aborted by user")
return modified
else:
explorer.show()
del app
def showWarning(message, title="Warning"):
"""
shows a warning dialog with given message
"""
app = guidata.qapplication()
QMessageBox.warning(None, title, message)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
items = compute_quads()+compute_quads3()
imshow(items)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
items = compute_quads() + compute_quads3()
imshow(items)
def _findParametersManually(tobe, real):
import guidata
app = guidata.qapplication()
m = _MatchSelector(tobe, real)
m.raise_()
m.exec_()
if m.exitCode != 0:
return None, None
return m.transform, (m.real, m.tobe)
def _findParametersManually(tobe, real):
import guidata
app = guidata.qapplication()
m = _MatchSelector(tobe, real)
m.raise_()
m.exec_()
if m.exitCode != 0:
return None, None
return m.transform, (m.real, m.tobe)
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
from numpy import linspace, sin
import labrad
cx=labrad.connect('lab-rat', password='******')
ai=cx.agilent_pna
ai.select_device(0)
ai.s_parameters(['S21'])
ai.averages(1000)
ai.bandwidth(100)
ai.power(0)
ai.frequency_range(10.93e9, 11.03e9)
ai.num_points(3201)
testscan=ai.freq_sweep()
print len(testscan)
xx=testscan[0].asarray
print xx
yytemp=testscan[1].asarray[0]
print yytemp
yy=np.square(np.abs(yytemp))
# x = linspace(-10, 10, 200)
# dy = x/100.
# y = sin(sin(sin(x)))
# x2 = linspace(-10, 10, 20)
# y2 = sin(sin(sin(x2)))
# plot(make.curve(x, y, color="b"),
# make.curve(x2, y2, color="g", curvestyle="Sticks"),
# make.curve(x, sin(2*y), color="r"),
# make.merror(x, y/2, dy),
# make.label("Relative position <b>outside</b>",
# (x[0], y[0]), (-10, -10), "BR"),
# make.label("Relative position <i>inside</i>",
# (x[0], y[0]), (10, 10), "TL"),
# make.label("Absolute position", "R", (0,0), "R"),
# make.legend("TR"),
# make.marker(position=(5., .8), label_cb=lambda x, y: u"A = %.2f" % x,
# markerstyle="|", movable=False)
# )
plot(make.curve(xx*1e-9, 10*np.log10(yy), color="b")#,
# make.curve(xx*2e-9, 10*np.log10(yy), color="g"),
# make.curve(x, sin(2*y), color="r"),
# make.merror(x, y/2, dy),
# make.label("PNA SCAN<b>test</b>",
# (xx[0], yy[0]), (-10, -10), "BR"),
# make.label("PNA SCAN<b>test 2X</b>",
# (xx[0], yy[0]), (-10, -10), "BR"),
# make.label("Relative position <i>inside</i>",
# (x[0], y[0]), (10, 10), "TL"),
# make.label("Absolute position", "R", (0,0), "R"),
# make.legend("TR")
# make.marker(position=(5., .8), label_cb=lambda xx, yy: u"A = %.2f" % xx,
# markerstyle="|", movable=False)
)
def test():
"""Test"""
# -- Create QApplication
import guidata
app = guidata.qapplication()
# --
win = Window()
win.show()
app.exec_()
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
for func in (compute_image, compute_image_2, compute_image_3):
img = func()
print(img.dtype)
imshow(img)
def saveCalibrationPickle(stereo_var,calib_var):
print '\n# SAVE CALIBRATION'
# save data to file
app = guidata.qapplication()
# get selected directory
myDir = getexistingdirectory()
with open(myDir+'\calibration.pickle', 'w') as f:
pickle.dump([stereo_var,calib_var], f)
def build_window(self):
self.app = guidata.qapplication()
self.win = Window(wintitle=self.title)
images = False
for (i, j), ax in list(self.axes.items()):
ax.setup_window(i, j, self.win)
if ax.images:
images = True
self.win.add_panels(images=images)
self.win.register_tools(images=images)
def run():
from guidata import qapplication
app = qapplication()
w = ThothMainWindow()
app.connect(app, SIGNAL("lastWindowClosed()"), app, SLOT("quit()"))
app.connect(w, SIGNAL("closed()"), app, SLOT("quit()"))
w.show()
app.exec_()
def build_window(self):
self.app = guidata.qapplication()
self.win = Window(wintitle=self.title)
images = False
for (i, j), ax in list(self.axes.items()):
ax.setup_window(i, j, self.win)
if ax.images:
images = True
self.win.add_panels(images=images)
self.win.register_tools(images=images)
def eic_plotter(self):
"""generator which receives plot items"""
unique_labels = set()
seen = set()
allrts = []
for i in itertools.count():
item = yield
if item is None:
break
label, curve, config = item
if config is None:
config = {"color": getColor(i), "linewidth": 1.5}
rts, chromatogram = curve
if (id(rts), id(chromatogram)) in seen:
continue
seen.add((id(rts), id(chromatogram)))
label = "<pre>%s</pre>" % label
unique_labels.add(label)
curve = make_unselectable_curve(rts, chromatogram, title=label, **config)
allrts.extend(rts)
self.plot.add_item(curve)
self.plot.replot()
qapplication().processEvents()
self.plot.add_item(self.label)
self.plot.set_x_values(sorted(set(allrts)))
# no idea why guiqwt needs double registration here:
self.marker.attach(self.plot)
self.plot.add_item(self.marker)
if self.range_ is not None:
self.plot.add_item(self.range_)
self.plot.replot()
yield # avoids StopIteration
def setData(self, index, value, role=Qt.EditRole):
assert isinstance(value, QVariant)
if index.isValid() and 0 <= index.row() < len(self.table):
dataIdx = self.widgetColToDataCol[index.column()]
expectedType = self.table._colTypes[dataIdx]
if value.toString().trimmed()=="-":
value = None
elif expectedType != object:
# QVariant -> QString -> str + strip:
value = str(value.toString()).strip()
# minutes ?
if re.match("^((\d+m)|(\d*.\d+m))$", value):
value = 60.0 * float(value[:-1])
try:
value = expectedType(value)
except Exception:
guidata.qapplication().beep()
return False
return self.runAction(ChangeValueAction, index, dataIdx, value)
return False
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
filename = osp.join(osp.dirname(__file__), "brain.png")
image = make.image(filename=filename, colormap="bone")
rect = get_segment(image)
print("Coordinates:", rect)
print("Distance:", np.sqrt((rect[2]-rect[0])**2 + (rect[3]-rect[1])**2))
def setData(self, index, value, role=Qt.EditRole):
assert isinstance(value, QVariant)
if index.isValid() and 0 <= index.row() < len(self.table):
__, dataIdx = self.table_index(index)
expectedType = self.table._colTypes[dataIdx]
if value.toString().trimmed() == "-":
value = None
elif expectedType != object:
# QVariant -> QString -> str + strip:
value = str(value.toString()).strip()
# minutes ?
if re.match("^((\d+m)|(\d*.\d+m))$", value):
value = 60.0 * float(value[:-1])
try:
value = expectedType(value)
except Exception:
guidata.qapplication().beep()
return False
return self.runAction(ChangeValueAction, index, dataIdx, value)
return False
def chooseConfig(configs, params):
from config_choose_dialog import ConfigChooseDialog
import guidata
app = guidata.qapplication()
dlg = ConfigChooseDialog(configs, params)
dlg.activateWindow()
dlg.raise_()
dlg.exec_()
return dlg.result
def chooseConfig(configs, params):
from config_choose_dialog import ConfigChooseDialog
import guidata
app = guidata.qapplication()
dlg = ConfigChooseDialog(configs, params)
dlg.activateWindow()
dlg.raise_()
dlg.exec_()
return dlg.result
def loadCalibrationPickle():
print '\n# LOAD CALIBRATION'
# save data to file
app = guidata.qapplication()
# get selected directory
myDir = getexistingdirectory()
with open(myDir+'\calibration.pickle') as f:
stereo_var,calib_var = pickle.load(f)
return stereo_var,calib_var
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
filename = osp.join(osp.dirname(__file__), "brain.png")
win = create_window()
image = make.image(filename=filename, colormap="bone", alpha_mask=True)
plot = win.get_plot()
plot.add_item(image)
win.exec_()
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
from numpy import linspace, sin
x = linspace(-10, 10, 1000)
y = sin(sin(sin(x)))
x2 = linspace(-10, 10, 20)
y2 = sin(sin(sin(x2)))
print(get_point((x, y), (x2, y2), (x, sin(2 * y))))
def test():
"""Test"""
# -- Create QApplication
import guidata
_app = guidata.qapplication()
# --
from numpy import linspace, sin
x = linspace(-10, 10, 1000)
y = sin(sin(sin(x)))
x2 = linspace(-10, 10, 20)
y2 = sin(sin(sin(x2)))
print(get_point( (x, y), (x2, y2), (x, sin(2*y)) ))
def inspectPeakMap(peakmap, peakmap2=None, extra_items=None, table=None, modal=True, parent=None):
"""
allows the visual inspection of a peakmap
"""
app = guidata.qapplication() # singleton !
win = PeakMapExplorer(parent=parent)
win.setup(peakmap, peakmap2, extra_items)
if modal:
win.raise_()
win.exec_()
else:
win.show()
def editConfig(self):
import guidata
app = guidata.qapplication() # singleton !
import guidata.dataset.datatypes as dt
import guidata.dataset.dataitems as di
def check_value(self, value):
if not isinstance(value, self.type):
return False
if str(value).strip()=="":
return True
return di.DirectoryItem._check_value(self, value)
di.DirectoryItem._check_value = di.DirectoryItem.check_value
di.DirectoryItem.check_value = check_value
class ConfigEditor(dt.DataSet):
""" ConfigEditor
Please provide a global exchange folder for databases,
scripts and configs shared among your lab.
If you do not have such an exchange folder, leave the
field empty.
You need a metlin token for accessing the metlin
web service. To register for this token go to
http://metlin.scripps.edu/soap/register.php
You can leave this field empty.
If you want to modify these values later, enter
>>> import userConfig
>>> userConfig.setMetlinToken("....")
"""
exchangeFolder = di.DirectoryItem("Global exchange folder:",
notempty=False, default=self.exchangeFolder or "")
metlinToken = di.StringItem("Metlin token:",
default = self.metlinToken or "")
dlg = ConfigEditor()
dlg.edit()
self.exchangeFolder = dlg.exchangeFolder
self.metlinToken = dlg.metlinToken
di.DirectoryItem.check_value = di.DirectoryItem._check_value
self.saveConfig()
