Python python_to_workflow示例

示例#1

文件： workflows.py 项目： gregvonkuster/planemo

def _raw_dict(path, importer):
    if path.endswith(".ga"):
        with open(path, "r") as f:
            workflow = json.load(f)
    else:
        workflow_directory = os.path.dirname(path)
        workflow_directory = os.path.abspath(workflow_directory)
        with open(path, "r") as f:
            workflow = yaml.load(f)
            workflow = python_to_workflow(workflow, importer, workflow_directory)

    return workflow

示例#2

文件： workflows.py 项目： stevecassidy/planemo

def _raw_dict(path, importer):
    if path.endswith(".ga"):
        with open(path, "r") as f:
            workflow = json.load(f)
    else:
        workflow_directory = os.path.dirname(path)
        workflow_directory = os.path.abspath(workflow_directory)
        with open(path, "r") as f:
            workflow = yaml.load(f)
            workflow = python_to_workflow(workflow, importer,
                                          workflow_directory)

    return workflow

示例#3

文件： workflows.py 项目： pvanheus/planemo

def _raw_dict(path, importer=None):
    if path.endswith(".ga"):
        with open(path, "r") as f:
            workflow = json.load(f)
    else:
        if importer is None:
            importer = DummyImporterGalaxyInterface()

        workflow_directory = os.path.dirname(path)
        workflow_directory = os.path.abspath(workflow_directory)
        with open(path, "r") as f:
            workflow = yaml.load(f)
            workflow = python_to_workflow(workflow, importer, workflow_directory)

    return workflow

示例#4

文件： workflows.py 项目： Slugger70/SauerEnrichmentAnalysis

def _raw_dict(path, importer=None):
    if path.endswith(".ga"):
        with open(path, "r") as f:
            workflow = json.load(f)
    else:
        if importer is None:
            importer = DummyImporterGalaxyInterface()

        workflow_directory = os.path.dirname(path)
        workflow_directory = os.path.abspath(workflow_directory)
        with open(path, "r") as f:
            workflow = yaml.safe_load(f)
            workflow = python_to_workflow(workflow, importer,
                                          workflow_directory)

    return workflow

示例#5

def to_native(has_yaml, **kwds):
    if isinstance(has_yaml, dict):
        return python_to_workflow(has_yaml, MockGalaxyInterface(), None,
                                  **kwds)
    else:
        return yaml_to_workflow(has_yaml, MockGalaxyInterface(), None, **kwds)