def make_fid(name, mode, userblock_size, fapl, fcpl=None):
""" Get a new FileID by opening or creating a file.
Also validates mode argument."""
if userblock_size is not None:
if mode in ("r", "r+"):
raise ValueError("User block may only be specified " "when creating a file")
try:
userblock_size = int(userblock_size)
except (TypeError, ValueError):
raise ValueError("User block size must be an integer")
if fcpl is None:
fcpl = h5p.create(h5p.FILE_CREATE)
fcpl.set_userblock(userblock_size)
if mode == "r":
fid = h5f.open(name, h5f.ACC_RDONLY, fapl=fapl)
elif mode == "r+":
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
elif mode == "w-":
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
elif mode == "w":
fid = h5f.create(name, h5f.ACC_TRUNC, fapl=fapl, fcpl=fcpl)
elif mode == "a":
# Open in append mode (read/write).
# If that fails, create a new file only if it won't clobber an
# existing one (ACC_EXCL)
try:
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
except IOError:
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
elif mode is None:
# Try to open in append mode (read/write).
# If that fails, try readonly, and finally create a new file only
# if it won't clobber an existing file (ACC_EXCL).
try:
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
except IOError:
try:
fid = h5f.open(name, h5f.ACC_RDONLY, fapl=fapl)
except IOError:
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
else:
raise ValueError("Invalid mode; must be one of r, r+, w, w-, a")
try:
if userblock_size is not None:
existing_fcpl = fid.get_create_plist()
if existing_fcpl.get_userblock() != userblock_size:
raise ValueError(
"Requested userblock size (%d) does not match that of existing file (%d)"
% (userblock_size, existing_fcpl.get_userblock())
)
except:
fid.close()
raise
return fid
def make_fid(name, mode, userblock_size, fapl, fcpl=None):
""" Get a new FileID by opening or creating a file.
Also validates mode argument."""
if userblock_size is not None:
if mode in ('r', 'r+'):
raise ValueError("User block may only be specified "
"when creating a file")
try:
userblock_size = int(userblock_size)
except (TypeError, ValueError):
raise ValueError("User block size must be an integer")
if fcpl is None:
fcpl = h5p.create(h5p.FILE_CREATE)
fcpl.set_userblock(userblock_size)
if mode == 'r':
fid = h5f.open(name, h5f.ACC_RDONLY, fapl=fapl)
elif mode == 'r+':
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
elif mode == 'w-':
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
elif mode == 'w':
fid = h5f.create(name, h5f.ACC_TRUNC, fapl=fapl, fcpl=fcpl)
elif mode == 'a':
# Open in append mode (read/write).
# If that fails, create a new file only if it won't clobber an
# existing one (ACC_EXCL)
try:
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
except IOError:
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
elif mode is None:
# Try to open in append mode (read/write).
# If that fails, try readonly, and finally create a new file only
# if it won't clobber an existing file (ACC_EXCL).
try:
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
except IOError:
try:
fid = h5f.open(name, h5f.ACC_RDONLY, fapl=fapl)
except IOError:
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
else:
raise ValueError("Invalid mode; must be one of r, r+, w, w-, a")
try:
if userblock_size is not None:
existing_fcpl = fid.get_create_plist()
if existing_fcpl.get_userblock() != userblock_size:
raise ValueError(
"Requested userblock size (%d) does not match that of existing file (%d)"
% (userblock_size, existing_fcpl.get_userblock()))
except:
fid.close()
raise
return fid
def main():
a = DetPulseCoord()
fileid = h5f.create(b"test.h5")
x = [1, 3, 3]
y = [1., 3., 3, 4., 5, 3., 33.]
x = ones((100, 3), dtype=int32)
y = ones((100, 7), dtype=float32)
z = ones((100, 2), dtype=float32)
c = [(x[i], y[i], z[i]) for i in range(100)]
data = {a.names[0]: x, a.names[1]: y}
dspaceid = h5s.create_simple((1, ), (h5s.UNLIMITED, ))
# dset = h5d.create(fileid, a.name, a.type, dspaceid)
# dset.write()
file = File("test.h5")
numpytype = dtype([("coord", int32, (3, )), ("pulse", float32, (7, )),
("EZ", float32, (2, ))])
data = array(c, dtype=numpytype)
tid = h5t.C_S1.copy()
tid.set_size(6)
H5T6 = Datatype(tid)
tid.set_size(4)
H5T_C_S1_4 = Datatype(tid)
file.create_dataset("DetPulseCoord", data=data)
file.attrs.create("CLASS", "TABLE", dtype=H5T6)
file.attrs.create("FIELD_0_NAME", a.names[0])
file.attrs.create("FIELD_1_NAME", a.names[1])
file.attrs.create("TITLE", "Detpulse coord pair data")
file.attrs.create("VERSION", "3.0", dtype=H5T_C_S1_4)
file.attrs.create("abstime", 1.45e9, dtype=float64, shape=(1, ))
file.attrs.create("nevents", 122421, dtype=float64, shape=(1, ))
file.attrs.create("runtime", 125000, dtype=float64, shape=(1, ))
file.flush()
def make_fid(name, mode, plist):
""" Get a new FileID by opening or creating a file.
Also validates mode argument."""
if mode == 'r':
fid = h5f.open(name, h5f.ACC_RDONLY, fapl=plist)
elif mode == 'r+':
fid = h5f.open(name, h5f.ACC_RDWR, fapl=plist)
elif mode == 'w-':
fid = h5f.create(name, h5f.ACC_EXCL, fapl=plist)
elif mode == 'w':
fid = h5f.create(name, h5f.ACC_TRUNC, fapl=plist)
elif mode == 'a' or mode is None:
try:
fid = h5f.open(name, h5f.ACC_RDWR, fapl=plist)
except IOError:
fid = h5f.create(name, h5f.ACC_EXCL, fapl=plist)
else:
raise ValueError("Invalid mode; must be one of r, r+, w, w-, a")
return fid
def make_fid(name, mode, userblock_size, fapl):
""" Get a new FileID by opening or creating a file.
Also validates mode argument."""
fcpl = None
if userblock_size is not None:
if mode in ('r', 'r+'):
raise ValueError(
"User block may only be specified when creating a file")
try:
userblock_size = int(userblock_size)
except (TypeError, ValueError):
raise ValueError("User block size must be an integer")
fcpl = h5p.create(h5p.FILE_CREATE)
fcpl.set_userblock(userblock_size)
if mode == 'r':
fid = h5f.open(name, h5f.ACC_RDONLY, fapl=fapl)
elif mode == 'r+':
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
elif mode == 'w-':
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
elif mode == 'w':
fid = h5f.create(name, h5f.ACC_TRUNC, fapl=fapl, fcpl=fcpl)
elif mode == 'a' or mode is None:
try:
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
try:
existing_fcpl = fid.get_create_plist()
if userblock_size is not None and existing_fcpl.get_userblock(
) != userblock_size:
raise ValueError(
"Requested userblock size (%d) does not match that of existing file (%d)"
% (userblock_size, existing_fcpl.get_userblock()))
except:
fid.close()
raise
except IOError:
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
else:
raise ValueError("Invalid mode; must be one of r, r+, w, w-, a")
return fid
def make_fid(name, mode, userblock_size, fapl):
""" Get a new FileID by opening or creating a file.
Also validates mode argument."""
fcpl = None
if userblock_size is not None:
if mode in ('r', 'r+'):
raise ValueError("User block may only be specified "
"when creating a file")
try:
userblock_size = int(userblock_size)
except (TypeError, ValueError):
raise ValueError("User block size must be an integer")
fcpl = h5p.create(h5p.FILE_CREATE)
fcpl.set_userblock(userblock_size)
if mode == 'r':
fid = h5f.open(name, h5f.ACC_RDONLY, fapl=fapl)
elif mode == 'r+':
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
elif mode == 'w-':
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
elif mode == 'w':
fid = h5f.create(name, h5f.ACC_TRUNC, fapl=fapl, fcpl=fcpl)
elif mode == 'a' or mode is None:
try:
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
try:
existing_fcpl = fid.get_create_plist()
if (userblock_size is not None and
existing_fcpl.get_userblock() != userblock_size):
raise ValueError("Requested userblock size (%d) does not match that of existing file (%d)" % (userblock_size, existing_fcpl.get_userblock()))
except:
fid.close()
raise
except IOError:
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
else:
raise ValueError("Invalid mode; must be one of r, r+, w, w-, a")
return fid
def main():
sec2j.init()
fapl = h5p.create(h5p.FILE_ACCESS)
print fapl
print 'fapl.id:', fapl.id
sec2j.set_fapl(fapl.id)
fname = "test.h5"
if os.path.exists(fname):
print 'Opening the file...'
fid = h5f.open(fname, fapl=fapl)
else:
fid = h5f.create(fname, flags=h5f.ACC_TRUNC, fapl=fapl)
print 'fid ready:', fid.id
#return
f = h5py.File(fid)
sec2j.tx_start(fid.id)
g = f.require_group('bbic/volume/0')
for i in range(10000):
g.attrs.create('a%d' % i, 640)
f.flush()
os._exit(-1)