def go_term_info(goid=None): if goid is None: flash("That page needs a GOID") return redirect(url_for("homepage")) go_info = es.go_info(goid) genes = es.go_to_gene(goid) if go_info is None or genes is None: if go_info is None: flash("You need to implement <code>go_info()</code>") if genes is None: flash("You need to implement <code>go_to_gene()</code>") return redirect(url_for('homepage')) genes = [(gene, es.gene_name(gene)) for gene in es.go_to_gene(goid)] local_network = hs.go_network(goid, True, 1) if local_network is None: flash("You could maybe implement <code>go_network()</code>") elif len(local_network['nodes']) > 1000: flash("Too many nodes to plot a network, forget it") local_network = {'nodes': [], 'links': []} return render_template("go_term.html", go_info=go_info, genes=genes, local_network=local_network)
def gene_info(gene=None): if gene is None: flash("That page needs a gene ID") return redirect(url_for("homepage")) gene_name = es.gene_name(gene) gene_info = es.gene_info(gene) if gene_name is None or gene_info is None: if gene_name is None: flash("You need to implement <code>gene_name()</code>") if gene_info is None: flash("You need to implement <code>gene_info()</code>") return redirect(url_for('homepage')) go_terms = es.gene_to_go(gene) if go_terms is None: flash("You need to implement <code>gene_to_go()</code>") go_terms = [] else: go_terms = [(goid, es.go_info(goid)) for goid in go_terms] if go_terms and go_terms[0][1] is None: flash("You need to implement <code>go_info()</code>") gene_data = es.gene_data(gene) if gene_data is None: flash("You need to implement <code>gene_data()</code>") hist_data = None else: gene_hist,bins = np.histogram(gene_data, bins=np.linspace(-8, 8, 33)) hist_data = zip(bins[:-1], gene_hist) local_network = hs.go_network(gene, False, 2) if local_network is None: flash("You should implement <code>go_network()</code>") elif len(local_network['nodes']) > 1000: flash("Too many nodes to plot a network, forget it") local_network = {'nodes': [], 'links': []} return render_template("gene.html", gene_name=gene_name, gene_info=gene_info, go_terms=go_terms, hist_data=hist_data, local_network=local_network)