def test_failure(self):
""" Harvester should raise exception if clumpp generation sees weird line structure.
"""
tmpDirParent = makeTempDirParent()
tmpDirs = []
for example in td.clumppLineStructure:
tmpDirs.append(
os.path.abspath(
makeTempDir('clumppLineStructure_%s' % example.name)))
results = os.path.join(tmpDirs[-1], 'results')
out = os.path.join(tmpDirs[-1], 'out')
if not os.path.exists(out):
os.mkdir(out)
populateExample(example, tmpDirs[-1])
files = glob(os.path.join(results, '*_f'))
for f in files:
data = hc.Data()
data.records = {} # key is K, value is an array
run, errorString = hc.readFile(f, data)
self.assertTrue(run is not None)
data.records.setdefault(run.k, []).append(run)
data.sortedKs = data.records.keys()
data.sortedKs.sort()
self.assertRaises(hc.ClumppLineStructure, hc.clumppPopFile,
results, out, data)
[self.addCleanup(removeDir, d) for d in tmpDirs]
self.addCleanup(removeDirIfEmpty, tmpDirParent)
def test_failure(self):
""" Harvester should raise exception if clumpp generation sees weird line structure.
"""
tmpDirParent = makeTempDirParent()
tmpDirs = []
for example in td.clumppLineStructure:
tmpDirs.append(
os.path.abspath(makeTempDir('clumppLineStructure_%s' % example.name)))
results = os.path.join(tmpDirs[-1], 'results')
out = os.path.join(tmpDirs[-1], 'out')
if not os.path.exists(out):
os.mkdir(out)
populateExample(example, tmpDirs[-1])
files = glob(os.path.join(results, '*_f'))
for f in files:
data = hc.Data()
data.records = {} # key is K, value is an array
run, errorString = hc.readFile(f, data)
self.assertTrue(run is not None)
data.records.setdefault(run.k, []).append(run)
data.sortedKs = data.records.keys()
data.sortedKs.sort()
self.assertRaises(hc.ClumppLineStructure, hc.clumppPopFile,
results, out, data)
[self.addCleanup(removeDir, d) for d in tmpDirs]
self.addCleanup(removeDirIfEmpty, tmpDirParent)
def harvestFiles(data, options):
files = glob.glob(os.path.join(options.resultsDir, '*_f'))
if len(files) < 1:
sys.stderr.write('Error, unable to locate any _f files in '
'the results directory %s' % options.resultsDir)
sys.exit(1)
data.records = {} # key is K, value is an array
for f in files:
run, errorString = hc.readFile(f, data, badValue)
if run is not None:
if run.k not in data.records:
data.records[run.k] = []
data.records[run.k].append(run)
else:
sys.stderr.write('Error, unable to extract results from file %s.\n' % f)
sys.stderr.write('%s\n' % errorString)
sys.exit(1)
data.sortedKs = data.records.keys()
data.sortedKs.sort()
def harvestFiles(data, options):
files = glob.glob(os.path.join(options.resultsDir, '*_f'))
if len(files) < 1:
sys.stderr.write('Error, unable to locate any _f files in '
'the results directory %s' % options.resultsDir)
sys.exit(1)
data.records = {} # key is K, value is an array
for f in files:
run, errorString = hc.readFile(f, data, badValue)
if run is not None:
if run.k not in data.records:
data.records[run.k] = []
data.records[run.k].append(run)
else:
sys.stderr.write(
'Error, unable to extract results from file %s.\n' % f)
sys.stderr.write('%s\n' % errorString)
sys.exit(1)
data.sortedKs = data.records.keys()
data.sortedKs.sort()
def harvestFiles(data, args):
files = glob.glob(os.path.join(args.resultsDir, '*_f'))
if len(files) < 1:
sys.stderr.write('Error, unable to locate any _f files in '
'the results directory %s' % args.resultsDir)
sys.exit(1)
data.records = {} # key is K, value is an array
for f in files:
try:
run, errorString = hc.readFile(f, data)
except hc.UnexpectedValue as e:
unexpectedValue(e.filename, e.valuename, e.value, e.data)
if run is not None:
data.records.setdefault(run.k, []).append(run)
else:
sys.stderr.write(
'Error, unable to extract results from file %s.\n' % f)
sys.stderr.write('%s\n' % errorString)
sys.exit(1)
data.sortedKs = data.records.keys()
data.sortedKs.sort()