def test_adaptive_timestep():
class VanDerPolOscillator:
def __init__(self, mu=30):
self.mu = mu
self.t_start = 0
self.t_end = 100
def ic(self):
return numpy.array([2, 0], dtype=numpy.float64)
def __call__(self, t, y):
u1 = y[0]
u2 = y[1]
return numpy.array([
u2,
-self.mu*(u1**2-1)*u2-u1],
dtype=numpy.float64)
example = VanDerPolOscillator()
y = example.ic()
from hedge.timestep.dumka3 import Dumka3TimeStepper
stepper = Dumka3TimeStepper(3, rtol=1e-6)
next_dt = 1e-5
from hedge.timestep import times_and_steps
times = []
hist = []
dts = []
for step, t, max_dt in times_and_steps(
max_dt_getter=lambda t: next_dt,
taken_dt_getter=lambda: taken_dt,
start_time=example.t_start, final_time=example.t_end):
#if step % 100 == 0:
#print t
hist.append(y)
times.append(t)
y, t, taken_dt, next_dt = stepper(y, t, next_dt, example)
dts.append(taken_dt)
if False:
from matplotlib.pyplot import plot, show
plot(times, [h_entry[1] for h_entry in hist])
show()
plot(times, dts)
show()
dts = numpy.array(dts)
small_step_frac = len(numpy.nonzero(dts < 0.01)[0]) / step
big_step_frac = len(numpy.nonzero(dts > 0.1)[0]) / step
assert abs(small_step_frac - 0.6) < 0.1
assert abs(big_step_frac - 0.2) < 0.1
def test_adaptive_timestep():
class VanDerPolOscillator:
def __init__(self, mu=30):
self.mu = mu
self.t_start = 0
self.t_end = 100
def ic(self):
return numpy.array([2, 0], dtype=numpy.float64)
def __call__(self, t, y):
u1 = y[0]
u2 = y[1]
return numpy.array([
u2,
-self.mu*(u1**2-1)*u2-u1],
dtype=numpy.float64)
example = VanDerPolOscillator()
y = example.ic()
from hedge.timestep.dumka3 import Dumka3TimeStepper
stepper = Dumka3TimeStepper(3, rtol=1e-6)
next_dt = 1e-5
from hedge.timestep import times_and_steps
times = []
hist = []
dts = []
for step, t, max_dt in times_and_steps(
max_dt_getter=lambda t: next_dt,
taken_dt_getter=lambda: taken_dt,
start_time=example.t_start, final_time=example.t_end):
#if step % 100 == 0:
#print t
hist.append(y)
times.append(t)
y, t, taken_dt, next_dt = stepper(y, t, next_dt, example)
dts.append(taken_dt)
if False:
from matplotlib.pyplot import plot, show
plot(times, [h_entry[1] for h_entry in hist])
show()
plot(times, dts)
show()
dts = numpy.array(dts)
small_step_frac = len(numpy.nonzero(dts < 0.01)[0]) / step
big_step_frac = len(numpy.nonzero(dts > 0.1)[0]) / step
assert abs(small_step_frac - 0.6) < 0.1
assert abs(big_step_frac - 0.2) < 0.1
def main(write_output=True):
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script("..")
from hedge.backends import guess_run_context
rcon = guess_run_context()
from hedge.tools import EOCRecorder
eoc_rec = EOCRecorder()
if rcon.is_head_rank:
from hedge.mesh.generator import \
make_rect_mesh, \
make_centered_regular_rect_mesh
refine = 4
mesh = make_centered_regular_rect_mesh((0,-5), (10,5), n=(9,9),
post_refine_factor=refine)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
# a second mesh to regrid to
if rcon.is_head_rank:
from hedge.mesh.generator import \
make_rect_mesh, \
make_centered_regular_rect_mesh
refine = 4
mesh2 = make_centered_regular_rect_mesh((0,-5), (10,5), n=(8,8),
post_refine_factor=refine)
mesh_data2 = rcon.distribute_mesh(mesh2)
else:
mesh_data2 = rcon.receive_mesh()
for order in [3,4]:
discr = rcon.make_discretization(mesh_data, order=order,
default_scalar_type=numpy.float64,
quad_min_degrees={
"gasdyn_vol": 3*order,
"gasdyn_face": 3*order,
})
discr2 = rcon.make_discretization(mesh_data2, order=order,
default_scalar_type=numpy.float64,
quad_min_degrees={
"gasdyn_vol": 3*order,
"gasdyn_face": 3*order,
})
from hedge.visualization import SiloVisualizer, VtkVisualizer
vis = VtkVisualizer(discr, rcon, "vortex-%d" % order)
#vis = SiloVisualizer(discr, rcon)
from gas_dynamics_initials import Vortex
vortex = Vortex()
fields = vortex.volume_interpolant(0, discr)
from hedge.models.gas_dynamics import GasDynamicsOperator
from hedge.mesh import TAG_ALL
op = GasDynamicsOperator(dimensions=2, gamma=vortex.gamma, mu=vortex.mu,
prandtl=vortex.prandtl, spec_gas_const=vortex.spec_gas_const,
bc_inflow=vortex, bc_outflow=vortex, bc_noslip=vortex,
inflow_tag=TAG_ALL, source=None)
euler_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = euler_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements for mesh 1 =", len(mesh.elements)
print "#elements for mesh 2 =", len(mesh2.elements)
# limiter ------------------------------------------------------------
from hedge.models.gas_dynamics import SlopeLimiter1NEuler
limiter = SlopeLimiter1NEuler(discr, vortex.gamma, 2, op)
from hedge.timestep import SSPRK3TimeStepper
#stepper = SSPRK3TimeStepper(limiter=limiter)
stepper = SSPRK3TimeStepper()
#from hedge.timestep import RK4TimeStepper
#stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = "euler-%d.dat" % order
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
try:
final_time = 0.2
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
#if False:
visf = vis.make_file("vortex-%d-%04d" % (order, step))
#true_fields = vortex.volume_interpolant(t, discr)
from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(visf,
[
("rho", discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields), kind="numpy")),
#("true_rho", discr.convert_volume(op.rho(true_fields), kind="numpy")),
#("true_e", discr.convert_volume(op.e(true_fields), kind="numpy")),
#("true_rho_u", discr.convert_volume(op.rho_u(true_fields), kind="numpy")),
#("true_u", discr.convert_volume(op.u(true_fields), kind="numpy")),
#("rhs_rho", discr.convert_volume(op.rho(rhs_fields), kind="numpy")),
#("rhs_e", discr.convert_volume(op.e(rhs_fields), kind="numpy")),
#("rhs_rho_u", discr.convert_volume(op.rho_u(rhs_fields), kind="numpy")),
],
#expressions=[
#("diff_rho", "rho-true_rho"),
#("diff_e", "e-true_e"),
#("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
#("p", "0.4*(e- 0.5*(rho_u*u))"),
#],
time=t, step=step
)
visf.close()
fields = stepper(fields, t, dt, rhs)
#fields = limiter(fields)
#regrid to discr2 at some arbitrary time
if step == 21:
#get interpolated fields
fields = discr.get_regrid_values(fields, discr2, dtype=None, use_btree=True, thresh=1e-8)
#get new stepper (old one has reference to discr
stepper = SSPRK3TimeStepper()
#new bind
euler_ex = op.bind(discr2)
#new rhs
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = euler_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(t+dt, fields)
#add logmanager
#discr2.add_instrumentation(logmgr)
#new step_it
step_it = times_and_steps(
final_time=final_time, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr2,
stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
#new visualization
vis.close()
vis = VtkVisualizer(discr2, rcon, "vortexNewGrid-%d" % order)
discr=discr2
assert not numpy.isnan(numpy.sum(fields[0]))
true_fields = vortex.volume_interpolant(final_time, discr)
l2_error = discr.norm(fields-true_fields)
l2_error_rho = discr.norm(op.rho(fields)-op.rho(true_fields))
l2_error_e = discr.norm(op.e(fields)-op.e(true_fields))
l2_error_rhou = discr.norm(op.rho_u(fields)-op.rho_u(true_fields))
l2_error_u = discr.norm(op.u(fields)-op.u(true_fields))
eoc_rec.add_data_point(order, l2_error)
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
logmgr.set_constant("l2_error", l2_error)
logmgr.set_constant("l2_error_rho", l2_error_rho)
logmgr.set_constant("l2_error_e", l2_error_e)
logmgr.set_constant("l2_error_rhou", l2_error_rhou)
logmgr.set_constant("l2_error_u", l2_error_u)
logmgr.set_constant("refinement", refine)
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True,
dir_tag=TAG_NONE,
neu_tag=TAG_NONE,
rad_tag=TAG_ALL,
flux_type_arg="upwind",
dtype=np.float64,
debug=[]):
from math import sin, cos, pi, exp, sqrt # noqa
from hedge.backends import guess_run_context
rcon = guess_run_context()
dim = 2
if dim == 1:
if rcon.is_head_rank:
from hedge.mesh.generator import make_uniform_1d_mesh
mesh = make_uniform_1d_mesh(-10, 10, 500)
elif dim == 2:
from hedge.mesh.generator import make_rect_mesh
if rcon.is_head_rank:
mesh = make_rect_mesh(a=(-0.5, -0.5), b=(0.5, 0.5), max_area=0.008)
elif dim == 3:
if rcon.is_head_rank:
from hedge.mesh.generator import make_ball_mesh
mesh = make_ball_mesh(max_volume=0.0005)
else:
raise RuntimeError("bad number of dimensions")
if rcon.is_head_rank:
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper(dtype=dtype)
from hedge.models.wave import StrongWaveOperator
from hedge.mesh import TAG_ALL, TAG_NONE # noqa
source_center = np.array([0.1, 0.22])
source_width = 0.05
source_omega = 3
import hedge.optemplate as sym
sym_x = sym.nodes(2)
sym_source_center_dist = sym_x - source_center
op = StrongWaveOperator(
-1,
dim,
source_f=sym.CFunction("sin")(
source_omega * sym.ScalarParameter("t")) * sym.CFunction("exp")(
-np.dot(sym_source_center_dist, sym_source_center_dist) /
source_width**2),
dirichlet_tag=dir_tag,
neumann_tag=neu_tag,
radiation_tag=rad_tag,
flux_type=flux_type_arg)
discr = rcon.make_discretization(mesh_data,
order=4,
debug=debug,
default_scalar_type=dtype,
tune_for=op.op_template())
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "fld")
from hedge.tools import join_fields
fields = join_fields(
discr.volume_zeros(dtype=dtype),
[discr.volume_zeros(dtype=dtype) for i in range(discr.dimensions)])
# {{{ diagnostics setup
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "wave.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
stepper.add_instrumentation(logmgr)
from hedge.log import LpNorm
u_getter = lambda: fields[0]
logmgr.add_quantity(LpNorm(u_getter, discr, 1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# }}}
# {{{ timestep loop
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=4,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, [
("u", discr.convert_volume(fields[0], kind="numpy")),
("v", discr.convert_volume(fields[1:], kind="numpy")),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 1
assert fields[0].dtype == dtype
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True) :
from math import sin, cos, pi, exp, sqrt
from hedge.data import TimeConstantGivenFunction, \
ConstantGivenFunction
from hedge.backends import guess_run_context
rcon = guess_run_context()
dim = 2
def boundary_tagger(fvi, el, fn, all_v):
if el.face_normals[fn][0] > 0:
return ["dirichlet"]
else:
return ["neumann"]
if dim == 2:
if rcon.is_head_rank:
from hedge.mesh.generator import make_disk_mesh
mesh = make_disk_mesh(r=0.5, boundary_tagger=boundary_tagger)
elif dim == 3:
if rcon.is_head_rank:
from hedge.mesh.generator import make_ball_mesh
mesh = make_ball_mesh(max_volume=0.001)
else:
raise RuntimeError, "bad number of dimensions"
if rcon.is_head_rank:
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
discr = rcon.make_discretization(mesh_data, order=3,
debug=["cuda_no_plan"],
default_scalar_type=numpy.float64)
if write_output:
from hedge.visualization import VtkVisualizer
vis = VtkVisualizer(discr, rcon, "fld")
def u0(x, el):
if la.norm(x) < 0.2:
return 1
else:
return 0
def coeff(x, el):
if x[0] < 0:
return 0.25
else:
return 1
def dirichlet_bc(t, x):
return 0
def neumann_bc(t, x):
return 2
from hedge.models.diffusion import DiffusionOperator
op = DiffusionOperator(discr.dimensions,
#coeff=coeff,
dirichlet_tag="dirichlet",
dirichlet_bc=TimeConstantGivenFunction(ConstantGivenFunction(0)),
neumann_tag="neumann",
neumann_bc=TimeConstantGivenFunction(ConstantGivenFunction(1))
)
u = discr.interpolate_volume_function(u0)
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "heat.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
from hedge.log import LpNorm
u_getter = lambda: u
logmgr.add_quantity(LpNorm(u_getter, discr, 1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# timestep loop -----------------------------------------------------------
from hedge.timestep.runge_kutta import LSRK4TimeStepper, ODE45TimeStepper
from hedge.timestep.dumka3 import Dumka3TimeStepper
#stepper = LSRK4TimeStepper()
stepper = Dumka3TimeStepper(3, rtol=1e-6, rcon=rcon,
vector_primitive_factory=discr.get_vector_primitive_factory(),
dtype=discr.default_scalar_type)
#stepper = ODE45TimeStepper(rtol=1e-6, rcon=rcon,
#vector_primitive_factory=discr.get_vector_primitive_factory(),
#dtype=discr.default_scalar_type)
stepper.add_instrumentation(logmgr)
rhs = op.bind(discr)
try:
next_dt = op.estimate_timestep(discr,
stepper=LSRK4TimeStepper(), t=0, fields=u)
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=0.1, logmgr=logmgr,
max_dt_getter=lambda t: next_dt,
taken_dt_getter=lambda: taken_dt)
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, [
("u", discr.convert_volume(u, kind="numpy")),
], time=t, step=step)
visf.close()
u, t, taken_dt, next_dt = stepper(u, t, next_dt, rhs)
#u = stepper(u, t, dt, rhs)
assert discr.norm(u) < 1
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(final_time=1, write_output=False):
from hedge.backends import guess_run_context
rcon = guess_run_context()
from hedge.tools import EOCRecorder, to_obj_array
eoc_rec = EOCRecorder()
if rcon.is_head_rank:
from hedge.mesh import make_box_mesh
mesh = make_box_mesh((0, 0, 0), (10, 10, 10), max_volume=0.5)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3, 4, 5]:
discr = rcon.make_discretization(mesh_data,
order=order,
default_scalar_type=numpy.float64)
from hedge.visualization import SiloVisualizer, VtkVisualizer
vis = VtkVisualizer(discr, rcon, "sinewave-%d" % order)
#vis = SiloVisualizer(discr, rcon)
sinewave = SineWave()
fields = sinewave.volume_interpolant(0, discr)
gamma, mu, prandtl, spec_gas_const = sinewave.properties()
from hedge.mesh import TAG_ALL
from hedge.models.gas_dynamics import GasDynamicsOperator
op = GasDynamicsOperator(dimensions=mesh.dimensions,
gamma=gamma,
mu=mu,
prandtl=prandtl,
spec_gas_const=spec_gas_const,
bc_inflow=sinewave,
bc_outflow=sinewave,
bc_noslip=sinewave,
inflow_tag=TAG_ALL,
source=None)
euler_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = euler_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_name = ("euler-sinewave-%(order)d-%(els)d.dat" % {
"order": order,
"els": len(mesh.elements)
})
else:
log_name = False
logmgr = LogManager(log_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
#if step % 10 == 0:
if write_output:
visf = vis.make_file("sinewave-%d-%04d" % (order, step))
#from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(
visf,
[
("rho",
discr.convert_volume(op.rho(fields),
kind="numpy")),
("e",
discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u",
discr.convert_volume(op.rho_u(fields),
kind="numpy")),
("u",
discr.convert_volume(op.u(fields), kind="numpy")),
#("true_rho", op.rho(true_fields)),
#("true_e", op.e(true_fields)),
#("true_rho_u", op.rho_u(true_fields)),
#("true_u", op.u(true_fields)),
#("rhs_rho", op.rho(rhs_fields)),
#("rhs_e", op.e(rhs_fields)),
#("rhs_rho_u", op.rho_u(rhs_fields)),
],
#expressions=[
#("diff_rho", "rho-true_rho"),
#("diff_e", "e-true_e"),
#("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
#("p", "0.4*(e- 0.5*(rho_u*u))"),
#],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
finally:
vis.close()
logmgr.close()
discr.close()
true_fields = sinewave.volume_interpolant(t, discr)
eoc_rec.add_data_point(order, discr.norm(fields - true_fields))
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
def main(write_output=True,
dir_tag=TAG_NONE,
neu_tag=TAG_NONE,
rad_tag=TAG_ALL,
flux_type_arg="upwind"):
from math import sin, cos, pi, exp, sqrt # noqa
from hedge.backends import guess_run_context
rcon = guess_run_context()
dim = 2
if dim == 1:
if rcon.is_head_rank:
from hedge.mesh.generator import make_uniform_1d_mesh
mesh = make_uniform_1d_mesh(-10, 10, 500)
elif dim == 2:
from hedge.mesh.generator import make_rect_mesh
if rcon.is_head_rank:
mesh = make_rect_mesh(a=(-1, -1), b=(1, 1), max_area=0.003)
elif dim == 3:
if rcon.is_head_rank:
from hedge.mesh.generator import make_ball_mesh
mesh = make_ball_mesh(max_volume=0.0005)
else:
raise RuntimeError("bad number of dimensions")
if rcon.is_head_rank:
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
discr = rcon.make_discretization(mesh_data, order=4)
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper()
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "fld")
source_center = np.array([0.7, 0.4])
source_width = 1/16
source_omega = 3
import hedge.optemplate as sym
sym_x = sym.nodes(2)
sym_source_center_dist = sym_x - source_center
from hedge.models.wave import VariableVelocityStrongWaveOperator
op = VariableVelocityStrongWaveOperator(
c=sym.If(sym.Comparison(
np.dot(sym_x, sym_x), "<", 0.4**2),
1, 0.5),
dimensions=discr.dimensions,
source=
sym.CFunction("sin")(source_omega*sym.ScalarParameter("t"))
* sym.CFunction("exp")(
-np.dot(sym_source_center_dist, sym_source_center_dist)
/ source_width**2),
dirichlet_tag=dir_tag,
neumann_tag=neu_tag,
radiation_tag=rad_tag,
flux_type=flux_type_arg
)
from hedge.tools import join_fields
fields = join_fields(discr.volume_zeros(),
[discr.volume_zeros() for i in range(discr.dimensions)])
# {{{ diagnostics setup
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "wave.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
stepper.add_instrumentation(logmgr)
from hedge.log import LpNorm
u_getter = lambda: fields[0]
logmgr.add_quantity(LpNorm(u_getter, discr, 1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# }}}
# {{{ timestep loop
rhs = op.bind(discr)
try:
from hedge.timestep.stability import \
approximate_rk4_relative_imag_stability_region
max_dt = (
1/discr.compile(op.max_eigenvalue_expr())()
* discr.dt_non_geometric_factor()
* discr.dt_geometric_factor()
* approximate_rk4_relative_imag_stability_region(stepper))
if flux_type_arg == "central":
max_dt *= 0.25
from hedge.timestep import times_and_steps
step_it = times_and_steps(final_time=3, logmgr=logmgr,
max_dt_getter=lambda t: max_dt)
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf,
[
("u", fields[0]),
("v", fields[1:]),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 1
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True, allow_features=None, flux_type_arg=1, bdry_flux_type_arg=None, extra_discr_args={}):
from hedge.mesh.generator import make_cylinder_mesh, make_box_mesh
from hedge.tools import EOCRecorder, to_obj_array
from math import sqrt, pi
from analytic_solutions import (
check_time_harmonic_solution,
RealPartAdapter,
SplitComplexAdapter,
CylindricalFieldAdapter,
CylindricalCavityMode,
RectangularWaveguideMode,
RectangularCavityMode,
)
from hedge.models.em import MaxwellOperator
from hedge.backends import guess_run_context
rcon = guess_run_context(allow_features)
epsilon0 = 8.8541878176e-12 # C**2 / (N m**2)
mu0 = 4 * pi * 1e-7 # N/A**2.
epsilon = 1 * epsilon0
mu = 1 * mu0
eoc_rec = EOCRecorder()
cylindrical = False
periodic = False
if cylindrical:
R = 1
d = 2
mode = CylindricalCavityMode(m=1, n=1, p=1, radius=R, height=d, epsilon=epsilon, mu=mu)
r_sol = CylindricalFieldAdapter(RealPartAdapter(mode))
c_sol = SplitComplexAdapter(CylindricalFieldAdapter(mode))
if rcon.is_head_rank:
mesh = make_cylinder_mesh(radius=R, height=d, max_volume=0.01)
else:
if periodic:
mode = RectangularWaveguideMode(epsilon, mu, (3, 2, 1))
periodicity = (False, False, True)
else:
periodicity = None
mode = RectangularCavityMode(epsilon, mu, (1, 2, 2))
if rcon.is_head_rank:
mesh = make_box_mesh(max_volume=0.001, periodicity=periodicity)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [4, 5, 6]:
# for order in [1,2,3,4,5,6]:
extra_discr_args.setdefault("debug", []).extend(["cuda_no_plan", "cuda_dump_kernels"])
op = MaxwellOperator(epsilon, mu, flux_type=flux_type_arg, bdry_flux_type=bdry_flux_type_arg)
discr = rcon.make_discretization(mesh_data, order=order, tune_for=op.op_template(), **extra_discr_args)
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "em-%d" % order)
mode.set_time(0)
def get_true_field():
return discr.convert_volume(
to_obj_array(mode(discr).real.astype(discr.default_scalar_type).copy()), kind=discr.compute_kind
)
fields = get_true_field()
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper(dtype=discr.default_scalar_type, rcon=rcon)
# from hedge.timestep.dumka3 import Dumka3TimeStepper
# stepper = Dumka3TimeStepper(3, dtype=discr.default_scalar_type, rcon=rcon)
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, add_simulation_quantities, add_run_info
if write_output:
log_file_name = "maxwell-%d.dat" % order
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
from hedge.log import EMFieldGetter, add_em_quantities
field_getter = EMFieldGetter(discr, op, lambda: fields)
add_em_quantities(logmgr, op, field_getter)
logmgr.add_watches(["step.max", "t_sim.max", ("W_field", "W_el+W_mag"), "t_step.max"])
# timestep loop -------------------------------------------------------
rhs = op.bind(discr)
final_time = 0.5e-9
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr, stepper=stepper, t=t, fields=fields),
)
for step, t, dt in step_it:
if step % 50 == 0 and write_output:
sub_timer = vis_timer.start_sub_timer()
e, h = op.split_eh(fields)
visf = vis.make_file("em-%d-%04d" % (order, step))
vis.add_data(
visf,
[("e", discr.convert_volume(e, kind="numpy")), ("h", discr.convert_volume(h, kind="numpy"))],
time=t,
step=step,
)
visf.close()
sub_timer.stop().submit()
fields = stepper(fields, t, dt, rhs)
mode.set_time(final_time)
eoc_rec.add_data_point(order, discr.norm(fields - get_true_field()))
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
if rcon.is_head_rank:
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
assert eoc_rec.estimate_order_of_convergence()[0, 1] > 6
def main(write_output=True):
from hedge.timestep import RK4TimeStepper
from hedge.mesh import make_disk_mesh
from math import sqrt, pi, exp
from hedge.backends import guess_run_context, FEAT_CUDA
rcon = guess_run_context()
epsilon0 = 8.8541878176e-12 # C**2 / (N m**2)
mu0 = 4*pi*1e-7 # N/A**2.
epsilon = 1*epsilon0
mu = 1*mu0
c = 1/sqrt(mu*epsilon)
cylindrical = False
periodic = False
pml_width = 0.5
#mesh = make_mesh(a=numpy.array((-1,-1,-1)), b=numpy.array((1,1,1)),
#mesh = make_mesh(a=numpy.array((-3,-3)), b=numpy.array((3,3)),
mesh = make_mesh(a=numpy.array((-1,-1)), b=numpy.array((1,1)),
#mesh = make_mesh(a=numpy.array((-2,-2)), b=numpy.array((2,2)),
pml_width=pml_width, max_volume=0.01)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
class Current:
def volume_interpolant(self, t, discr):
from hedge.tools import make_obj_array
result = discr.volume_zeros(kind="numpy", dtype=numpy.float64)
omega = 6*c
if omega*t > 2*pi:
return make_obj_array([result, result, result])
x = make_obj_array(discr.nodes.T)
r = numpy.sqrt(numpy.dot(x, x))
idx = r<0.3
result[idx] = (1+numpy.cos(pi*r/0.3))[idx] \
*numpy.sin(omega*t)**3
result = discr.convert_volume(result, kind=discr.compute_kind,
dtype=discr.default_scalar_type)
return make_obj_array([-result, result, result])
order = 3
discr = rcon.make_discretization(mesh_data, order=order,
debug=["cuda_no_plan"])
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "em-%d" % order)
from hedge.mesh import TAG_ALL, TAG_NONE
from hedge.data import GivenFunction, TimeHarmonicGivenFunction, TimeIntervalGivenFunction
from hedge.models.em import MaxwellOperator
from hedge.models.pml import \
AbarbanelGottliebPMLMaxwellOperator, \
AbarbanelGottliebPMLTMMaxwellOperator, \
AbarbanelGottliebPMLTEMaxwellOperator
op = AbarbanelGottliebPMLTEMaxwellOperator(epsilon, mu, flux_type=1,
current=Current(),
pec_tag=TAG_ALL,
absorb_tag=TAG_NONE,
add_decay=True
)
fields = op.assemble_ehpq(discr=discr)
stepper = RK4TimeStepper()
if rcon.is_head_rank:
print "order %d" % order
print "#elements=", len(mesh.elements)
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = "maxwell-%d.dat" % order
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
from hedge.log import EMFieldGetter, add_em_quantities
field_getter = EMFieldGetter(discr, op, lambda: fields)
add_em_quantities(logmgr, op, field_getter)
logmgr.add_watches(["step.max", "t_sim.max", ("W_field", "W_el+W_mag"), "t_step.max"])
from hedge.log import LpNorm
class FieldIdxGetter:
def __init__(self, whole_getter, idx):
self.whole_getter = whole_getter
self.idx = idx
def __call__(self):
return self.whole_getter()[self.idx]
# timestep loop -------------------------------------------------------
t = 0
pml_coeff = op.coefficients_from_width(discr, width=pml_width)
rhs = op.bind(discr, pml_coeff)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=4/c, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
e, h, p, q = op.split_ehpq(fields)
visf = vis.make_file("em-%d-%04d" % (order, step))
#pml_rhs_e, pml_rhs_h, pml_rhs_p, pml_rhs_q = \
#op.split_ehpq(rhs(t, fields))
j = Current().volume_interpolant(t, discr)
vis.add_data(visf, [
("e", discr.convert_volume(e, "numpy")),
("h", discr.convert_volume(h, "numpy")),
("p", discr.convert_volume(p, "numpy")),
("q", discr.convert_volume(q, "numpy")),
("j", discr.convert_volume(j, "numpy")),
#("pml_rhs_e", pml_rhs_e),
#("pml_rhs_h", pml_rhs_h),
#("pml_rhs_p", pml_rhs_p),
#("pml_rhs_q", pml_rhs_q),
#("max_rhs_e", max_rhs_e),
#("max_rhs_h", max_rhs_h),
#("max_rhs_p", max_rhs_p),
#("max_rhs_q", max_rhs_q),
],
time=t, step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
_, _, energies_data = logmgr.get_expr_dataset("W_el+W_mag")
energies = [value for tick_nbr, value in energies_data]
assert energies[-1] < max(energies) * 1e-2
finally:
logmgr.close()
if write_output:
vis.close()
def main():
from hedge.backends import guess_run_context
rcon = guess_run_context()
if rcon.is_head_rank:
mesh = make_nacamesh()
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script("..")
for order in [4]:
from gas_dynamics_initials import UniformMachFlow
uniform_flow = UniformMachFlow()
from hedge.models.gas_dynamics import GasDynamicsOperator, GammaLawEOS
op = GasDynamicsOperator(
dimensions=2,
equation_of_state=GammaLawEOS(uniform_flow.gamma),
prandtl=uniform_flow.prandtl,
spec_gas_const=uniform_flow.spec_gas_const,
mu=uniform_flow.mu,
bc_inflow=uniform_flow,
bc_outflow=uniform_flow,
bc_noslip=uniform_flow,
inflow_tag="inflow",
outflow_tag="outflow",
noslip_tag="noslip",
)
discr = rcon.make_discretization(
mesh_data,
order=order,
debug=[
"cuda_no_plan",
# "cuda_dump_kernels",
# "dump_optemplate_stages",
# "dump_dataflow_graph",
# "print_op_code"
],
default_scalar_type=numpy.float32,
tune_for=op.op_template(),
)
from hedge.visualization import SiloVisualizer, VtkVisualizer
# vis = VtkVisualizer(discr, rcon, "shearflow-%d" % order)
vis = SiloVisualizer(discr, rcon)
fields = uniform_flow.volume_interpolant(0, discr)
navierstokes_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = navierstokes_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep.runge_kutta import ODE23TimeStepper, LSRK4TimeStepper
stepper = ODE23TimeStepper(
dtype=discr.default_scalar_type, rtol=1e-6, vector_primitive_factory=discr.get_vector_primitive_factory()
)
# stepper = LSRK4TimeStepper(dtype=discr.default_scalar_type)
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, add_simulation_quantities, add_run_info
logmgr = LogManager("cns-naca-%d.dat" % order, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import LogQuantity
class ChangeSinceLastStep(LogQuantity):
"""Records the change of a variable between a time step and the previous
one"""
def __init__(self, name="change"):
LogQuantity.__init__(self, name, "1", "Change since last time step")
self.old_fields = 0
def __call__(self):
result = discr.norm(fields - self.old_fields)
self.old_fields = fields
return result
# logmgr.add_quantity(ChangeSinceLastStep())
# filter setup-------------------------------------------------------------
from hedge.discretization import Filter, ExponentialFilterResponseFunction
mode_filter = Filter(discr, ExponentialFilterResponseFunction(min_amplification=0.9, order=4))
# timestep loop -------------------------------------------------------
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=200,
# max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: next_dt,
taken_dt_getter=lambda: taken_dt,
)
model_stepper = LSRK4TimeStepper()
next_dt = op.estimate_timestep(discr, stepper=model_stepper, t=0, max_eigenvalue=max_eigval[0])
for step, t, dt in step_it:
if step % 10 == 0:
visf = vis.make_file("naca-%d-%06d" % (order, step))
from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(
visf,
[
("rho", discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields), kind="numpy")),
# ("true_rho", op.rho(true_fields)),
# ("true_e", op.e(true_fields)),
# ("true_rho_u", op.rho_u(true_fields)),
# ("true_u", op.u(true_fields)),
# ("rhs_rho", discr.convert_volume(op.rho(rhs_fields), kind="numpy")),
# ("rhs_e", discr.convert_volume(op.e(rhs_fields), kind="numpy")),
# ("rhs_rho_u", discr.convert_volume(op.rho_u(rhs_fields), kind="numpy")),
],
expressions=[
# ("diff_rho", "rho-true_rho"),
# ("diff_e", "e-true_e"),
# ("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
("p", "(0.4)*(e- 0.5*(rho_u*u))")
],
time=t,
step=step,
)
visf.close()
fields, t, taken_dt, next_dt = stepper(fields, t, dt, rhs)
fields = mode_filter(fields)
finally:
vis.close()
logmgr.save()
discr.close()
def main(write_output=True, flux_type_arg="upwind"):
from hedge.tools import mem_checkpoint
from math import sin, cos, pi, sqrt
from math import floor
from hedge.backends import guess_run_context
rcon = guess_run_context()
def f(x):
return sin(pi * x)
def u_analytic(x, el, t):
return f((-numpy.dot(v, x) / norm_v + t * norm_v))
def boundary_tagger(vertices, el, face_nr, all_v):
if numpy.dot(el.face_normals[face_nr], v) < 0:
return ["inflow"]
else:
return ["outflow"]
dim = 2
if dim == 1:
v = numpy.array([1])
if rcon.is_head_rank:
from hedge.mesh.generator import make_uniform_1d_mesh
mesh = make_uniform_1d_mesh(0, 2, 10, periodic=True)
elif dim == 2:
v = numpy.array([2, 0])
if rcon.is_head_rank:
from hedge.mesh.generator import make_disk_mesh
mesh = make_disk_mesh(boundary_tagger=boundary_tagger)
elif dim == 3:
v = numpy.array([0, 0, 1])
if rcon.is_head_rank:
from hedge.mesh.generator import make_cylinder_mesh, make_ball_mesh, make_box_mesh
mesh = make_cylinder_mesh(max_volume=0.04,
height=2,
boundary_tagger=boundary_tagger,
periodic=False,
radial_subdivisions=32)
else:
raise RuntimeError, "bad number of dimensions"
norm_v = la.norm(v)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
if dim != 1:
mesh_data = mesh_data.reordered_by("cuthill")
discr = rcon.make_discretization(mesh_data, order=4)
vis_discr = discr
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(vis_discr, rcon, "fld")
# operator setup ----------------------------------------------------------
from hedge.data import \
ConstantGivenFunction, \
TimeConstantGivenFunction, \
TimeDependentGivenFunction
from hedge.models.advection import StrongAdvectionOperator, WeakAdvectionOperator
op = WeakAdvectionOperator(v,
inflow_u=TimeDependentGivenFunction(u_analytic),
flux_type=flux_type_arg)
u = discr.interpolate_volume_function(lambda x, el: u_analytic(x, el, 0))
# timestep setup ----------------------------------------------------------
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper()
if rcon.is_head_rank:
print "%d elements" % len(discr.mesh.elements)
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "advection.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from hedge.log import Integral, LpNorm
u_getter = lambda: u
logmgr.add_quantity(Integral(u_getter, discr, name="int_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, p=1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# timestep loop -----------------------------------------------------------
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(final_time=3,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, fields=u))
for step, t, dt in step_it:
if step % 5 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, [
("u", discr.convert_volume(u, kind="numpy")),
],
time=t,
step=step)
visf.close()
u = stepper(u, t, dt, rhs)
true_u = discr.interpolate_volume_function(
lambda x, el: u_analytic(x, el, t))
print discr.norm(u - true_u)
assert discr.norm(u - true_u) < 1e-2
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True, allow_features=None):
from hedge.timestep import RK4TimeStepper
from hedge.mesh import make_ball_mesh, make_cylinder_mesh, make_box_mesh
from hedge.visualization import \
VtkVisualizer, \
SiloVisualizer, \
get_rank_partition
from math import sqrt, pi
from hedge.backends import guess_run_context
rcon = guess_run_context(allow_features)
epsilon0 = 8.8541878176e-12 # C**2 / (N m**2)
mu0 = 4*pi*1e-7 # N/A**2.
epsilon = 1*epsilon0
mu = 1*mu0
dims = 3
if rcon.is_head_rank:
if dims == 2:
from hedge.mesh import make_rect_mesh
mesh = make_rect_mesh(
a=(-10.5,-1.5),
b=(10.5,1.5),
max_area=0.1
)
elif dims == 3:
from hedge.mesh import make_box_mesh
mesh = make_box_mesh(
a=(-10.5,-1.5,-1.5),
b=(10.5,1.5,1.5),
max_volume=0.1)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
#for order in [1,2,3,4,5,6]:
discr = rcon.make_discretization(mesh_data, order=3)
if write_output:
vis = VtkVisualizer(discr, rcon, "dipole")
from analytic_solutions import DipoleFarField, SphericalFieldAdapter
from hedge.data import ITimeDependentGivenFunction
sph_dipole = DipoleFarField(
q=1, #C
d=1/39,
omega=2*pi*1e8,
epsilon=epsilon0,
mu=mu0,
)
cart_dipole = SphericalFieldAdapter(sph_dipole)
class PointDipoleSource(ITimeDependentGivenFunction):
def __init__(self):
from pyrticle.tools import CInfinityShapeFunction
sf = CInfinityShapeFunction(
0.1*sph_dipole.wavelength,
discr.dimensions)
self.num_sf = discr.interpolate_volume_function(
lambda x, el: sf(x))
self.vol_0 = discr.volume_zeros()
def volume_interpolant(self, t, discr):
from hedge.tools import make_obj_array
return make_obj_array([
self.vol_0,
self.vol_0,
sph_dipole.source_modulation(t)*self.num_sf
])
from hedge.mesh import TAG_ALL, TAG_NONE
if dims == 2:
from hedge.models.em import TMMaxwellOperator as MaxwellOperator
else:
from hedge.models.em import MaxwellOperator
op = MaxwellOperator(
epsilon, mu,
flux_type=1,
pec_tag=TAG_NONE,
absorb_tag=TAG_ALL,
current=PointDipoleSource(),
)
fields = op.assemble_eh(discr=discr)
if rcon.is_head_rank:
print "#elements=", len(mesh.elements)
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = "dipole.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
from hedge.log import EMFieldGetter, add_em_quantities
field_getter = EMFieldGetter(discr, op, lambda: fields)
add_em_quantities(logmgr, op, field_getter)
from pytools.log import PushLogQuantity
relerr_e_q = PushLogQuantity("relerr_e", "1", "Relative error in masked E-field")
relerr_h_q = PushLogQuantity("relerr_h", "1", "Relative error in masked H-field")
logmgr.add_quantity(relerr_e_q)
logmgr.add_quantity(relerr_h_q)
logmgr.add_watches(["step.max", "t_sim.max",
("W_field", "W_el+W_mag"), "t_step.max",
"relerr_e", "relerr_h"])
if write_output:
point_timeseries = [
(open("b-x%d-vs-time.dat" % i, "w"),
open("b-x%d-vs-time-true.dat" % i, "w"),
discr.get_point_evaluator(numpy.array([i,0,0][:dims],
dtype=discr.default_scalar_type)))
for i in range(1,5)
]
# timestep loop -------------------------------------------------------
mask = discr.interpolate_volume_function(sph_dipole.far_field_mask)
def apply_mask(field):
from hedge.tools import log_shape
ls = log_shape(field)
result = discr.volume_empty(ls)
from pytools import indices_in_shape
for i in indices_in_shape(ls):
result[i] = mask * field[i]
return result
rhs = op.bind(discr)
t = 0
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=1e-8, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if write_output and step % 10 == 0:
sub_timer = vis_timer.start_sub_timer()
e, h = op.split_eh(fields)
sph_dipole.set_time(t)
true_e, true_h = op.split_eh(
discr.interpolate_volume_function(cart_dipole))
visf = vis.make_file("dipole-%04d" % step)
mask_e = apply_mask(e)
mask_h = apply_mask(h)
mask_true_e = apply_mask(true_e)
mask_true_h = apply_mask(true_h)
from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(visf,
[
("e", e),
("h", h),
("true_e", true_e),
("true_h", true_h),
("mask_e", mask_e),
("mask_h", mask_h),
("mask_true_e", mask_true_e),
("mask_true_h", mask_true_h)],
time=t, step=step)
visf.close()
sub_timer.stop().submit()
from hedge.tools import relative_error
relerr_e_q.push_value(
relative_error(
discr.norm(mask_e-mask_true_e),
discr.norm(mask_true_e)))
relerr_h_q.push_value(
relative_error(
discr.norm(mask_h-mask_true_h),
discr.norm(mask_true_h)))
if write_output:
for outf_num, outf_true, evaluator in point_timeseries:
for outf, ev_h in zip([outf_num, outf_true],
[h, true_h]):
outf.write("%g\t%g\n" % (t, op.mu*evaluator(ev_h[1])))
outf.flush()
fields = stepper(fields, t, dt, rhs)
finally:
if write_output:
vis.close()
logmgr.save()
discr.close()
def inner_run(self):
t = 0
setup = self.setup
setup.hook_startup(self)
vis_order = setup.vis_order
if vis_order is None:
vis_order = setup.element_order
if vis_order != setup.element_order:
vis_discr = self.rcon.make_discretization(self.discr.mesh,
order=vis_order,
debug=setup.dg_debug)
from hedge.discretization import Projector
vis_proj = Projector(self.discr, vis_discr)
else:
vis_discr = self.discr
def vis_proj(f):
return f
from hedge.visualization import SiloVisualizer
vis = SiloVisualizer(vis_discr)
fields = self.fields
self.observer.set_fields_and_state(fields, self.state)
from hedge.tools import make_obj_array
from pyrticle.cloud import TimesteppablePicState
def visualize(observer):
sub_timer = self.vis_timer.start_sub_timer()
import os.path
visf = vis.make_file(
os.path.join(setup.output_path, setup.vis_pattern % step))
self.method.add_to_vis(vis,
visf,
observer.state,
time=t,
step=step)
vis.add_data(
visf, [(name, vis_proj(fld))
for name, fld in setup.hook_vis_quantities(observer)],
time=t,
step=step)
setup.hook_visualize(self, vis, visf, observer)
visf.close()
sub_timer.stop().submit()
from hedge.timestep.multirate_ab import TwoRateAdamsBashforthTimeStepper
if not isinstance(self.stepper, TwoRateAdamsBashforthTimeStepper):
def rhs(t, fields_and_state):
fields, ts_state = fields_and_state
state_f = lambda: ts_state.state
fields_f = lambda: fields
fields_rhs = (self.f_rhs_calculator(t, fields_f, state_f) +
self.p2f_rhs_calculator(t, fields_f, state_f))
state_rhs = (self.p_rhs_calculator(t, fields_f, state_f) +
self.f2p_rhs_calculator(t, fields_f, state_f))
return make_obj_array([fields_rhs, state_rhs])
step_args = (self.dt, rhs)
else:
def add_unwrap(rhs):
def unwrapping_rhs(t, fields, ts_state):
return rhs(t, fields, lambda: ts_state().state)
return unwrapping_rhs
step_args = ((
add_unwrap(self.f_rhs_calculator),
add_unwrap(self.p2f_rhs_calculator),
add_unwrap(self.f2p_rhs_calculator),
add_unwrap(self.p_rhs_calculator),
), )
y = make_obj_array(
[fields, TimesteppablePicState(self.method, self.state)])
del self.state
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(max_steps=self.nsteps,
logmgr=self.logmgr,
max_dt_getter=lambda t: self.dt)
for step, t, dt in step_it:
self.method.upkeep(y[1].state)
if step % setup.vis_interval == 0:
visualize(self.observer)
y = self.stepper(y, t, *step_args)
fields, ts_state = y
self.observer.set_fields_and_state(fields, ts_state.state)
setup.hook_after_step(self, self.observer)
finally:
vis.close()
self.discr.close()
self.logmgr.save()
setup.hook_when_done(self)
try:
from hedge.timestep import times_and_steps
# for visc=0.01
#stab_fac = 0.1 # RK4
#stab_fac = 1.6 # dumka3(3), central
#stab_fac = 3 # dumka3(4), central
#stab_fac = 0.01 # RK4
stab_fac = 0.2 # dumka3(3), central
#stab_fac = 3 # dumka3(4), central
dt = stab_fac * op.estimate_timestep(
discr, stepper=LSRK4TimeStepper(), t=0, fields=u)
step_it = times_and_steps(final_time=case.final_time,
logmgr=logmgr,
max_dt_getter=lambda t: dt)
from hedge.optemplate import InverseVandermondeOperator
inv_vdm = InverseVandermondeOperator().bind(discr)
for step, t, dt in step_it:
if step % 3 == 0 and write_output:
if hasattr(case, "u_exact"):
extra_fields = [("u_exact",
discr.interpolate_volume_function(
lambda x, el: case.u_exact(x[0], t)))]
else:
extra_fields = []
visf = vis.make_file("fld-%04d" % step)
def main(write_output=True,
flux_type_arg="upwind", dtype=np.float64, debug=[]):
from math import sin, cos, pi, exp, sqrt # noqa
from hedge.backends import guess_run_context
rcon = guess_run_context()
if rcon.is_head_rank:
from hedge.mesh.reader.gmsh import generate_gmsh
mesh = generate_gmsh(GEOMETRY, 2,
allow_internal_boundaries=True,
force_dimension=2)
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
discr = rcon.make_discretization(mesh_data, order=4, debug=debug,
default_scalar_type=dtype)
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper(dtype=dtype)
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "fld")
source_center = 0
source_width = 0.05
source_omega = 3
import hedge.optemplate as sym
sym_x = sym.nodes(2)
sym_source_center_dist = sym_x - source_center
from hedge.models.wave import StrongWaveOperator
op = StrongWaveOperator(-1, discr.dimensions,
source_f=
sym.CFunction("sin")(source_omega*sym.ScalarParameter("t"))
* sym.CFunction("exp")(
-np.dot(sym_source_center_dist, sym_source_center_dist)
/ source_width**2),
dirichlet_tag="boundary",
neumann_tag=TAG_NONE,
radiation_tag=TAG_NONE,
flux_type=flux_type_arg
)
from hedge.tools import join_fields
fields = join_fields(discr.volume_zeros(dtype=dtype),
[discr.volume_zeros(dtype=dtype) for i in range(discr.dimensions)])
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "wiggly.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -----------------------------------------------------------
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=4, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf,
[
("u", fields[0]),
("v", fields[1:]),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 1
assert fields[0].dtype == dtype
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True, \
dir_tag=TAG_NONE, \
neu_tag=TAG_NONE,\
rad_tag=TAG_ALL,
flux_type_arg="upwind"):
from math import sin, cos, pi, exp, sqrt
from hedge.backends import guess_run_context
rcon = guess_run_context()
dim = 2
if dim == 1:
if rcon.is_head_rank:
from hedge.mesh.generator import make_uniform_1d_mesh
mesh = make_uniform_1d_mesh(-10, 10, 500)
elif dim == 2:
from hedge.mesh.generator import make_rect_mesh
if rcon.is_head_rank:
mesh = make_rect_mesh(a=(-1,-1),b=(1,1),max_area=0.003)
elif dim == 3:
if rcon.is_head_rank:
from hedge.mesh.generator import make_ball_mesh
mesh = make_ball_mesh(max_volume=0.0005)
else:
raise RuntimeError, "bad number of dimensions"
if rcon.is_head_rank:
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
discr = rcon.make_discretization(mesh_data, order=4)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper()
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "fld")
def source_u(x, el):
x = x - numpy.array([0.7, 0.4])
return exp(-numpy.dot(x, x)*256)
def c_speed(x, el):
if la.norm(x) < 0.4:
return 1
else:
return 0.5
from hedge.models.wave import VariableVelocityStrongWaveOperator
from hedge.data import \
TimeIntervalGivenFunction, \
make_tdep_given
from hedge.mesh import TAG_ALL, TAG_NONE
op = VariableVelocityStrongWaveOperator(
make_tdep_given(c_speed),
discr.dimensions,
source=TimeIntervalGivenFunction(
make_tdep_given(source_u),
0, 0.1),
dirichlet_tag=dir_tag,
neumann_tag=neu_tag,
radiation_tag=rad_tag,
flux_type=flux_type_arg
)
from hedge.tools import join_fields
fields = join_fields(discr.volume_zeros(),
[discr.volume_zeros() for i in range(discr.dimensions)])
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "wave.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
stepper.add_instrumentation(logmgr)
from hedge.log import Integral, LpNorm
u_getter = lambda: fields[0]
logmgr.add_quantity(LpNorm(u_getter, discr, 1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# timestep loop -----------------------------------------------------------
rhs = op.bind(discr)
try:
dt = op.estimate_timestep(discr, stepper=stepper, fields=fields)
if flux_type_arg == "central":
dt *= 0.25
from hedge.timestep import times_and_steps
step_it = times_and_steps(final_time=3, logmgr=logmgr,
max_dt_getter=lambda t: dt)
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf,
[
("u", fields[0]),
("v", fields[1:]),
("c", op.c.volume_interpolant(0, discr)),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 1
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True,
allow_features=None,
flux_type_arg=1,
bdry_flux_type_arg=None,
extra_discr_args={}):
from hedge.mesh.generator import make_cylinder_mesh, make_box_mesh
from hedge.tools import EOCRecorder, to_obj_array
from math import sqrt, pi # noqa
from analytic_solutions import ( # noqa
RealPartAdapter, SplitComplexAdapter, CylindricalFieldAdapter,
CylindricalCavityMode, RectangularWaveguideMode, RectangularCavityMode)
from hedge.models.em import MaxwellOperator
logging.basicConfig(level=logging.DEBUG)
from hedge.backends import guess_run_context
rcon = guess_run_context(allow_features)
epsilon0 = 8.8541878176e-12 # C**2 / (N m**2)
mu0 = 4 * pi * 1e-7 # N/A**2.
epsilon = 1 * epsilon0
mu = 1 * mu0
eoc_rec = EOCRecorder()
cylindrical = False
periodic = False
if cylindrical:
R = 1
d = 2
mode = CylindricalCavityMode(m=1,
n=1,
p=1,
radius=R,
height=d,
epsilon=epsilon,
mu=mu)
# r_sol = CylindricalFieldAdapter(RealPartAdapter(mode))
# c_sol = SplitComplexAdapter(CylindricalFieldAdapter(mode))
if rcon.is_head_rank:
mesh = make_cylinder_mesh(radius=R, height=d, max_volume=0.01)
else:
if periodic:
mode = RectangularWaveguideMode(epsilon, mu, (3, 2, 1))
periodicity = (False, False, True)
else:
periodicity = None
mode = RectangularCavityMode(epsilon, mu, (1, 2, 2))
if rcon.is_head_rank:
mesh = make_box_mesh(max_volume=0.001, periodicity=periodicity)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [4, 5, 6]:
#for order in [1,2,3,4,5,6]:
extra_discr_args.setdefault("debug", []).extend(
["cuda_no_plan", "cuda_dump_kernels"])
op = MaxwellOperator(epsilon,
mu,
flux_type=flux_type_arg,
bdry_flux_type=bdry_flux_type_arg)
discr = rcon.make_discretization(mesh_data,
order=order,
tune_for=op.op_template(),
**extra_discr_args)
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "em-%d" % order)
mode.set_time(0)
def get_true_field():
return discr.convert_volume(to_obj_array(
mode(discr).real.astype(discr.default_scalar_type).copy()),
kind=discr.compute_kind)
fields = get_true_field()
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper(dtype=discr.default_scalar_type, rcon=rcon)
#from hedge.timestep.dumka3 import Dumka3TimeStepper
#stepper = Dumka3TimeStepper(3, dtype=discr.default_scalar_type, rcon=rcon)
# {{{ diagnostics setup
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = "maxwell-%d.dat" % order
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
from hedge.log import EMFieldGetter, add_em_quantities
field_getter = EMFieldGetter(discr, op, lambda: fields)
add_em_quantities(logmgr, op, field_getter)
logmgr.add_watches(
["step.max", "t_sim.max", ("W_field", "W_el+W_mag"), "t_step.max"])
# }}}
# {{{ timestep loop
rhs = op.bind(discr)
final_time = 0.5e-9
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 50 == 0 and write_output:
sub_timer = vis_timer.start_sub_timer()
e, h = op.split_eh(fields)
visf = vis.make_file("em-%d-%04d" % (order, step))
vis.add_data(visf, [
("e", discr.convert_volume(e, kind="numpy")),
("h", discr.convert_volume(h, kind="numpy")),
],
time=t,
step=step)
visf.close()
sub_timer.stop().submit()
fields = stepper(fields, t, dt, rhs)
mode.set_time(final_time)
eoc_rec.add_data_point(order,
discr.norm(fields - get_true_field()))
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
if rcon.is_head_rank:
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
# }}}
assert eoc_rec.estimate_order_of_convergence()[0, 1] > 6
def main():
from hedge.backends import guess_run_context
rcon = guess_run_context(["cuda"])
if rcon.is_head_rank:
mesh = make_boxmesh()
#from hedge.mesh import make_rect_mesh
#mesh = make_rect_mesh(
# boundary_tagger=lambda fvi, el, fn, all_v: ["inflow"])
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3]:
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script("..")
from gas_dynamics_initials import UniformMachFlow
box = UniformMachFlow(angle_of_attack=0)
from hedge.models.gas_dynamics import GasDynamicsOperator
op = GasDynamicsOperator(dimensions=3,
gamma=box.gamma,
mu=box.mu,
prandtl=box.prandtl,
spec_gas_const=box.spec_gas_const,
bc_inflow=box,
bc_outflow=box,
bc_noslip=box,
inflow_tag="inflow",
outflow_tag="outflow",
noslip_tag="noslip")
discr = rcon.make_discretization(
mesh_data,
order=order,
debug=[
#"cuda_no_plan",
#"cuda_dump_kernels",
#"dump_dataflow_graph",
#"dump_optemplate_stages",
#"dump_dataflow_graph",
#"print_op_code",
"cuda_no_plan_el_local",
],
default_scalar_type=numpy.float32,
tune_for=op.op_template())
from hedge.visualization import SiloVisualizer, VtkVisualizer # noqa
#vis = VtkVisualizer(discr, rcon, "shearflow-%d" % order)
vis = SiloVisualizer(discr, rcon)
fields = box.volume_interpolant(0, discr)
navierstokes_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = navierstokes_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
logmgr = LogManager("navierstokes-%d.dat" % order, "w",
rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
from pytools.log import LogQuantity
class ChangeSinceLastStep(LogQuantity):
"""Records the change of a variable between a time step and the previous
one"""
def __init__(self, name="change"):
LogQuantity.__init__(self, name, "1",
"Change since last time step")
self.old_fields = 0
def __call__(self):
result = discr.norm(fields - self.old_fields)
self.old_fields = fields
return result
logmgr.add_quantity(ChangeSinceLastStep())
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=200,
#max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
if step % 200 == 0:
#if False:
visf = vis.make_file("box-%d-%06d" % (order, step))
#rhs_fields = rhs(t, fields)
vis.add_data(
visf,
[
("rho",
discr.convert_volume(op.rho(fields),
kind="numpy")),
("e",
discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u",
discr.convert_volume(op.rho_u(fields),
kind="numpy")),
("u",
discr.convert_volume(op.u(fields), kind="numpy")),
# ("rhs_rho", discr.convert_volume(
# op.rho(rhs_fields), kind="numpy")),
# ("rhs_e", discr.convert_volume(
# op.e(rhs_fields), kind="numpy")),
# ("rhs_rho_u", discr.convert_volume(
# op.rho_u(rhs_fields), kind="numpy")),
],
expressions=[
("p", "(0.4)*(e- 0.5*(rho_u*u))"),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
finally:
vis.close()
logmgr.save()
discr.close()
def main(write_output=True,
dir_tag=TAG_NONE,
neu_tag=TAG_NONE,
rad_tag=TAG_ALL,
flux_type_arg="upwind"):
from math import sin, cos, pi, exp, sqrt # noqa
from hedge.backends import guess_run_context
rcon = guess_run_context()
dim = 2
if dim == 1:
if rcon.is_head_rank:
from hedge.mesh.generator import make_uniform_1d_mesh
mesh = make_uniform_1d_mesh(-10, 10, 500)
elif dim == 2:
from hedge.mesh.generator import make_rect_mesh
if rcon.is_head_rank:
mesh = make_rect_mesh(a=(-1, -1), b=(1, 1), max_area=0.003)
elif dim == 3:
if rcon.is_head_rank:
from hedge.mesh.generator import make_ball_mesh
mesh = make_ball_mesh(max_volume=0.0005)
else:
raise RuntimeError("bad number of dimensions")
if rcon.is_head_rank:
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
discr = rcon.make_discretization(mesh_data, order=4)
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper()
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "fld")
source_center = np.array([0.7, 0.4])
source_width = 1 / 16
source_omega = 3
import hedge.optemplate as sym
sym_x = sym.nodes(2)
sym_source_center_dist = sym_x - source_center
from hedge.models.wave import VariableVelocityStrongWaveOperator
op = VariableVelocityStrongWaveOperator(
c=sym.If(sym.Comparison(np.dot(sym_x, sym_x), "<", 0.4**2), 1, 0.5),
dimensions=discr.dimensions,
source=sym.CFunction("sin")(source_omega * sym.ScalarParameter("t")) *
sym.CFunction("exp")(
-np.dot(sym_source_center_dist, sym_source_center_dist) /
source_width**2),
dirichlet_tag=dir_tag,
neumann_tag=neu_tag,
radiation_tag=rad_tag,
flux_type=flux_type_arg)
from hedge.tools import join_fields
fields = join_fields(
discr.volume_zeros(),
[discr.volume_zeros() for i in range(discr.dimensions)])
# {{{ diagnostics setup
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "wave.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
stepper.add_instrumentation(logmgr)
from hedge.log import LpNorm
u_getter = lambda: fields[0]
logmgr.add_quantity(LpNorm(u_getter, discr, 1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# }}}
# {{{ timestep loop
rhs = op.bind(discr)
try:
from hedge.timestep.stability import \
approximate_rk4_relative_imag_stability_region
max_dt = (1 / discr.compile(op.max_eigenvalue_expr())() *
discr.dt_non_geometric_factor() *
discr.dt_geometric_factor() *
approximate_rk4_relative_imag_stability_region(stepper))
if flux_type_arg == "central":
max_dt *= 0.25
from hedge.timestep import times_and_steps
step_it = times_and_steps(final_time=3,
logmgr=logmgr,
max_dt_getter=lambda t: max_dt)
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, [
("u", fields[0]),
("v", fields[1:]),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 1
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True, flux_type_arg="central", use_quadrature=True,
final_time=20):
from math import sin, cos, pi, sqrt
from hedge.backends import guess_run_context
rcon = guess_run_context()
# mesh setup --------------------------------------------------------------
if rcon.is_head_rank:
#from hedge.mesh.generator import make_disk_mesh
#mesh = make_disk_mesh()
from hedge.mesh.generator import make_rect_mesh
mesh = make_rect_mesh(a=(-1,-1),b=(1,1),max_area=0.008)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
# space-time-dependent-velocity-field -------------------------------------
# simple vortex
class TimeDependentVField:
""" `TimeDependentVField` is a callable expecting `(x, t)` representing space and time
`x` is of the length of the spatial dimension and `t` is the time."""
shape = (2,)
def __call__(self, pt, el, t):
x, y = pt
# Correction-Factor to make the speed zero on the on the boundary
#fac = (1-x**2)*(1-y**2)
fac = 1.
return numpy.array([-y*fac, x*fac]) * cos(pi*t)
class VField:
""" `VField` is a callable expecting `(x)` representing space
`x` is of the length of the spatial dimension."""
shape = (2,)
def __call__(self, pt, el):
x, y = pt
# Correction-Factor to make the speed zero on the on the boundary
#fac = (1-x**2)*(1-y**2)
fac = 1.
return numpy.array([-y*fac, x*fac])
# space-time-dependent State BC (optional)-----------------------------------
class TimeDependentBc_u:
""" space and time dependent BC for state u"""
def __call__(self, pt, el, t):
x, y = pt
if t <= 0.5:
if x > 0:
return 1
else:
return 0
else:
return 0
class Bc_u:
""" Only space dependent BC for state u"""
def __call__(seld, pt, el):
x, y = pt
if x > 0:
return 1
else:
return 0
# operator setup ----------------------------------------------------------
# In the operator setup it is possible to switch between a only space
# dependent velocity field `VField` or a time and space dependent
# `TimeDependentVField`.
# For `TimeDependentVField`: advec_v=TimeDependentGivenFunction(VField())
# For `VField`: advec_v=TimeConstantGivenFunction(GivenFunction(VField()))
# Same for the Bc_u Function! If you don't define Bc_u then the BC for u = 0.
from hedge.data import \
ConstantGivenFunction, \
TimeConstantGivenFunction, \
TimeDependentGivenFunction, \
GivenFunction
from hedge.models.advection import VariableCoefficientAdvectionOperator
op = VariableCoefficientAdvectionOperator(mesh.dimensions,
#advec_v=TimeDependentGivenFunction(
# TimeDependentVField()),
advec_v=TimeConstantGivenFunction(
GivenFunction(VField())),
#bc_u_f=TimeDependentGivenFunction(
# TimeDependentBc_u()),
bc_u_f=TimeConstantGivenFunction(
GivenFunction(Bc_u())),
flux_type=flux_type_arg)
# discretization setup ----------------------------------------------------
order = 5
if use_quadrature:
quad_min_degrees = {"quad": 3*order}
else:
quad_min_degrees = {}
discr = rcon.make_discretization(mesh_data, order=order,
default_scalar_type=numpy.float64,
debug=["cuda_no_plan"],
quad_min_degrees=quad_min_degrees,
tune_for=op.op_template(),
)
vis_discr = discr
# visualization setup -----------------------------------------------------
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(vis_discr, rcon, "fld")
# initial condition -------------------------------------------------------
if True:
def initial(pt, el):
# Gauss pulse
from math import exp
x = (pt-numpy.array([0.3, 0.5]))*8
return exp(-numpy.dot(x, x))
else:
def initial(pt, el):
# Rectangle
x, y = pt
if abs(x) < 0.5 and abs(y) < 0.2:
return 2
else:
return 1
u = discr.interpolate_volume_function(initial)
# timestep setup ----------------------------------------------------------
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper(
vector_primitive_factory=discr.get_vector_primitive_factory())
if rcon.is_head_rank:
print "%d elements" % len(discr.mesh.elements)
# filter setup-------------------------------------------------------------
from hedge.discretization import ExponentialFilterResponseFunction
from hedge.optemplate.operators import FilterOperator
mode_filter = FilterOperator(
ExponentialFilterResponseFunction(min_amplification=0.9,order=4))\
.bind(discr)
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "space-dep.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from hedge.log import Integral, LpNorm
u_getter = lambda: u
logmgr.add_quantity(Integral(u_getter, discr, name="int_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, p=1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# Initialize v for data output:
v = op.advec_v.volume_interpolant(0, discr)
# timestep loop -----------------------------------------------------------
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=u))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, [
("u", discr.convert_volume(u, kind="numpy")),
("v", discr.convert_volume(v, kind="numpy"))
], time=t, step=step)
visf.close()
u = stepper(u, t, dt, rhs)
# We're feeding in a discontinuity through the BCs.
# Quadrature does not help with shock capturing--
# therefore we do need to filter here, regardless
# of whether quadrature is enabled.
u = mode_filter(u)
assert discr.norm(u) < 10
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True):
from math import sqrt, pi, exp
from os.path import join
from hedge.backends import guess_run_context
rcon = guess_run_context()
epsilon0 = 8.8541878176e-12 # C**2 / (N m**2)
mu0 = 4*pi*1e-7 # N/A**2.
epsilon = 1*epsilon0
mu = 1*mu0
output_dir = "maxwell-2d"
import os
if not os.access(output_dir, os.F_OK):
os.makedirs(output_dir)
from hedge.mesh.generator import make_disk_mesh
mesh = make_disk_mesh(r=0.5, max_area=1e-3)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
class CurrentSource:
shape = (3,)
def __call__(self, x, el):
return [0,0,exp(-80*la.norm(x))]
order = 3
final_time = 1e-8
discr = rcon.make_discretization(mesh_data, order=order,
debug=["cuda_no_plan"])
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, join(output_dir, "em-%d" % order))
if rcon.is_head_rank:
print "order %d" % order
print "#elements=", len(mesh.elements)
from hedge.mesh import TAG_ALL, TAG_NONE
from hedge.models.em import TMMaxwellOperator
from hedge.data import make_tdep_given, TimeIntervalGivenFunction
op = TMMaxwellOperator(epsilon, mu, flux_type=1,
current=TimeIntervalGivenFunction(
make_tdep_given(CurrentSource()), off_time=final_time/10),
absorb_tag=TAG_ALL, pec_tag=TAG_NONE)
fields = op.assemble_eh(discr=discr)
from hedge.timestep import LSRK4TimeStepper
stepper = LSRK4TimeStepper()
from time import time
last_tstep = time()
t = 0
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = join(output_dir, "maxwell-%d.dat" % order)
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
from hedge.log import EMFieldGetter, add_em_quantities
field_getter = EMFieldGetter(discr, op, lambda: fields)
add_em_quantities(logmgr, op, field_getter)
logmgr.add_watches(["step.max", "t_sim.max",
("W_field", "W_el+W_mag"), "t_step.max"])
# timestep loop -------------------------------------------------------
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
e, h = op.split_eh(fields)
visf = vis.make_file(join(output_dir, "em-%d-%04d" % (order, step)))
vis.add_data(visf,
[
("e", discr.convert_volume(e, "numpy")),
("h", discr.convert_volume(h, "numpy")),
],
time=t, step=step
)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 0.03
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(final_time=1, write_output=False):
from hedge.backends import guess_run_context
rcon = guess_run_context()
from hedge.tools import EOCRecorder, to_obj_array
eoc_rec = EOCRecorder()
if rcon.is_head_rank:
from hedge.mesh import make_box_mesh
mesh = make_box_mesh((0,0,0), (10,10,10), max_volume=0.5)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3, 4, 5]:
discr = rcon.make_discretization(mesh_data, order=order,
default_scalar_type=numpy.float64)
from hedge.visualization import SiloVisualizer, VtkVisualizer
vis = VtkVisualizer(discr, rcon, "sinewave-%d" % order)
#vis = SiloVisualizer(discr, rcon)
sinewave = SineWave()
fields = sinewave.volume_interpolant(0, discr)
gamma, mu, prandtl, spec_gas_const = sinewave.properties()
from hedge.mesh import TAG_ALL
from hedge.models.gas_dynamics import GasDynamicsOperator
op = GasDynamicsOperator(dimensions=mesh.dimensions, gamma=gamma, mu=mu,
prandtl=prandtl, spec_gas_const=spec_gas_const,
bc_inflow=sinewave, bc_outflow=sinewave, bc_noslip=sinewave,
inflow_tag=TAG_ALL, source=None)
euler_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = euler_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_name = ("euler-sinewave-%(order)d-%(els)d.dat"
% {"order":order, "els":len(mesh.elements)})
else:
log_name = False
logmgr = LogManager(log_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
#if step % 10 == 0:
if write_output:
visf = vis.make_file("sinewave-%d-%04d" % (order, step))
#from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(visf,
[
("rho", discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields), kind="numpy")),
#("true_rho", op.rho(true_fields)),
#("true_e", op.e(true_fields)),
#("true_rho_u", op.rho_u(true_fields)),
#("true_u", op.u(true_fields)),
#("rhs_rho", op.rho(rhs_fields)),
#("rhs_e", op.e(rhs_fields)),
#("rhs_rho_u", op.rho_u(rhs_fields)),
],
#expressions=[
#("diff_rho", "rho-true_rho"),
#("diff_e", "e-true_e"),
#("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
#("p", "0.4*(e- 0.5*(rho_u*u))"),
#],
time=t, step=step
)
visf.close()
fields = stepper(fields, t, dt, rhs)
finally:
vis.close()
logmgr.close()
discr.close()
true_fields = sinewave.volume_interpolant(t, discr)
eoc_rec.add_data_point(order, discr.norm(fields-true_fields))
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
def main(write_output=True, order=6):
from hedge.data import TimeConstantGivenFunction, \
GivenFunction
from os.path import join
from hedge.backends import guess_run_context
rcon = guess_run_context()
dim = 3
output_dir = "octahedron"
import os
if not os.access(output_dir, os.F_OK):
os.makedirs(output_dir)
if rcon.is_head_rank:
from hedge.mesh.reader.gmsh import read_gmsh
mesh = read_gmsh("octahedron.msh",
boundary_tagger=lambda x,y,z,w: ["traction"])
if rcon.is_head_rank:
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
class Displacement:
shape = (3,)
def __call__(self, x, el):
R = x[0] + x[1] + x[2]
return [-R/30, -R/30, -R/30]
final_time = 3
discr = rcon.make_discretization(mesh_data, order=order,
debug=[])
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, join(output_dir, "test-%d" % order))
if rcon.is_head_rank:
print "order %d" % order
print "#elements=", len(mesh.elements)
from hedge.mesh import TAG_NONE, TAG_ALL
from hedge.models.solid_mechanics import SolidMechanicsOperator
from hedge.models.solid_mechanics.constitutive_laws import NeoHookean
material = NeoHookean(50, 10, 0.3)
op = SolidMechanicsOperator(material,
init_displacement=GivenFunction(Displacement()),
dimensions=discr.dimensions)
fields = op.assemble_vars(discr=discr)
from hedge.timestep import LSRK4TimeStepper
stepper = LSRK4TimeStepper()
from time import time
last_tsep = time()
t = 0
# diagnostics setup -------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = join(output_dir, "oct-%d.dat" % order)
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
p_calc = op.bind_stress_calculator(discr)
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
u, v = op.split_vars(fields)
P = p_calc(u)
if step % 5 == 0 and write_output:
visf = vis.make_file(join(output_dir, "oct-%d-%04d" % (order, step)))
vis.add_data(visf,
[
("u", discr.convert_volume(u, "numpy")),
("v", discr.convert_volume(v, "numpy")),
("P", discr.convert_volume(P, "numpy"))
],
time=t, step=step
)
visf.close()
fields = stepper(fields, t, dt, rhs)
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main():
import logging
logging.basicConfig(level=logging.INFO)
from hedge.backends import guess_run_context
rcon = guess_run_context()
if rcon.is_head_rank:
if True:
mesh = make_squaremesh()
else:
from hedge.mesh import make_rect_mesh
mesh = make_rect_mesh(
boundary_tagger=lambda fvi, el, fn, all_v: ["inflow"],
max_area=0.1)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script(".")
for order in [3]:
from gas_dynamics_initials import UniformMachFlow
square = UniformMachFlow(gaussian_pulse_at=numpy.array([-2, 2]),
pulse_magnitude=0.003)
from hedge.models.gas_dynamics import (
GasDynamicsOperator,
GammaLawEOS)
op = GasDynamicsOperator(dimensions=2,
equation_of_state=GammaLawEOS(square.gamma), mu=square.mu,
prandtl=square.prandtl, spec_gas_const=square.spec_gas_const,
bc_inflow=square, bc_outflow=square, bc_noslip=square,
inflow_tag="inflow", outflow_tag="outflow", noslip_tag="noslip")
discr = rcon.make_discretization(mesh_data, order=order,
debug=["cuda_no_plan",
"cuda_dump_kernels",
#"dump_dataflow_graph",
#"dump_optemplate_stages",
#"dump_dataflow_graph",
#"dump_op_code"
#"cuda_no_plan_el_local"
],
default_scalar_type=numpy.float64,
tune_for=op.op_template(),
quad_min_degrees={
"gasdyn_vol": 3*order,
"gasdyn_face": 3*order,
}
)
from hedge.visualization import SiloVisualizer, VtkVisualizer
#vis = VtkVisualizer(discr, rcon, "shearflow-%d" % order)
vis = SiloVisualizer(discr, rcon)
from hedge.timestep.runge_kutta import (
LSRK4TimeStepper, ODE23TimeStepper, ODE45TimeStepper)
from hedge.timestep.dumka3 import Dumka3TimeStepper
#stepper = LSRK4TimeStepper(dtype=discr.default_scalar_type,
#vector_primitive_factory=discr.get_vector_primitive_factory())
stepper = ODE23TimeStepper(dtype=discr.default_scalar_type,
rtol=1e-6,
vector_primitive_factory=discr.get_vector_primitive_factory())
# Dumka works kind of poorly
#stepper = Dumka3TimeStepper(dtype=discr.default_scalar_type,
#rtol=1e-7, pol_index=2,
#vector_primitive_factory=discr.get_vector_primitive_factory())
#from hedge.timestep.dumka3 import Dumka3TimeStepper
#stepper = Dumka3TimeStepper(3, rtol=1e-7)
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
logmgr = LogManager("cns-square-sp-%d.dat" % order, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import LogQuantity
class ChangeSinceLastStep(LogQuantity):
"""Records the change of a variable between a time step and the previous
one"""
def __init__(self, name="change"):
LogQuantity.__init__(self, name, "1", "Change since last time step")
self.old_fields = 0
def __call__(self):
result = discr.norm(fields - self.old_fields)
self.old_fields = fields
return result
#logmgr.add_quantity(ChangeSinceLastStep())
add_simulation_quantities(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# filter setup ------------------------------------------------------------
from hedge.discretization import Filter, ExponentialFilterResponseFunction
mode_filter = Filter(discr,
ExponentialFilterResponseFunction(min_amplification=0.95, order=6))
# timestep loop -------------------------------------------------------
fields = square.volume_interpolant(0, discr)
navierstokes_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = navierstokes_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=1000,
#max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: next_dt,
taken_dt_getter=lambda: taken_dt)
model_stepper = LSRK4TimeStepper()
next_dt = op.estimate_timestep(discr,
stepper=model_stepper, t=0,
max_eigenvalue=max_eigval[0])
for step, t, dt in step_it:
#if (step % 10000 == 0): #and step < 950000) or (step % 500 == 0 and step > 950000):
#if False:
if step % 5 == 0:
visf = vis.make_file("square-%d-%06d" % (order, step))
#from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(visf,
[
("rho", discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields), kind="numpy")),
],
expressions=[
("p", "(0.4)*(e- 0.5*(rho_u*u))"),
],
time=t, step=step
)
visf.close()
if stepper.adaptive:
fields, t, taken_dt, next_dt = stepper(fields, t, dt, rhs)
else:
taken_dt = dt
fields = stepper(fields, t, dt, rhs)
dt = op.estimate_timestep(discr,
stepper=model_stepper, t=0,
max_eigenvalue=max_eigval[0])
#fields = mode_filter(fields)
finally:
vis.close()
logmgr.save()
discr.close()
def main():
import logging
logging.basicConfig(level=logging.INFO)
from hedge.backends import guess_run_context
rcon = guess_run_context()
if rcon.is_head_rank:
if True:
mesh = make_squaremesh()
else:
from hedge.mesh import make_rect_mesh
mesh = make_rect_mesh(
boundary_tagger=lambda fvi, el, fn, all_v: ["inflow"],
max_area=0.1)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script(".")
for order in [3]:
from gas_dynamics_initials import UniformMachFlow
square = UniformMachFlow(gaussian_pulse_at=numpy.array([-2, 2]),
pulse_magnitude=0.003)
from hedge.models.gas_dynamics import (GasDynamicsOperator,
GammaLawEOS)
op = GasDynamicsOperator(dimensions=2,
equation_of_state=GammaLawEOS(square.gamma),
mu=square.mu,
prandtl=square.prandtl,
spec_gas_const=square.spec_gas_const,
bc_inflow=square,
bc_outflow=square,
bc_noslip=square,
inflow_tag="inflow",
outflow_tag="outflow",
noslip_tag="noslip")
discr = rcon.make_discretization(
mesh_data,
order=order,
debug=[
"cuda_no_plan",
"cuda_dump_kernels",
#"dump_dataflow_graph",
#"dump_optemplate_stages",
#"dump_dataflow_graph",
#"dump_op_code"
#"cuda_no_plan_el_local"
],
default_scalar_type=numpy.float64,
tune_for=op.op_template(),
quad_min_degrees={
"gasdyn_vol": 3 * order,
"gasdyn_face": 3 * order,
})
from hedge.visualization import SiloVisualizer, VtkVisualizer
#vis = VtkVisualizer(discr, rcon, "shearflow-%d" % order)
vis = SiloVisualizer(discr, rcon)
from hedge.timestep.runge_kutta import (LSRK4TimeStepper,
ODE23TimeStepper,
ODE45TimeStepper)
from hedge.timestep.dumka3 import Dumka3TimeStepper
#stepper = LSRK4TimeStepper(dtype=discr.default_scalar_type,
#vector_primitive_factory=discr.get_vector_primitive_factory())
stepper = ODE23TimeStepper(
dtype=discr.default_scalar_type,
rtol=1e-6,
vector_primitive_factory=discr.get_vector_primitive_factory())
# Dumka works kind of poorly
#stepper = Dumka3TimeStepper(dtype=discr.default_scalar_type,
#rtol=1e-7, pol_index=2,
#vector_primitive_factory=discr.get_vector_primitive_factory())
#from hedge.timestep.dumka3 import Dumka3TimeStepper
#stepper = Dumka3TimeStepper(3, rtol=1e-7)
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
logmgr = LogManager("cns-square-sp-%d.dat" % order, "w",
rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import LogQuantity
class ChangeSinceLastStep(LogQuantity):
"""Records the change of a variable between a time step and the previous
one"""
def __init__(self, name="change"):
LogQuantity.__init__(self, name, "1",
"Change since last time step")
self.old_fields = 0
def __call__(self):
result = discr.norm(fields - self.old_fields)
self.old_fields = fields
return result
#logmgr.add_quantity(ChangeSinceLastStep())
add_simulation_quantities(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# filter setup ------------------------------------------------------------
from hedge.discretization import Filter, ExponentialFilterResponseFunction
mode_filter = Filter(
discr,
ExponentialFilterResponseFunction(min_amplification=0.95, order=6))
# timestep loop -------------------------------------------------------
fields = square.volume_interpolant(0, discr)
navierstokes_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = navierstokes_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=1000,
#max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: next_dt,
taken_dt_getter=lambda: taken_dt)
model_stepper = LSRK4TimeStepper()
next_dt = op.estimate_timestep(discr,
stepper=model_stepper,
t=0,
max_eigenvalue=max_eigval[0])
for step, t, dt in step_it:
#if (step % 10000 == 0): #and step < 950000) or (step % 500 == 0 and step > 950000):
#if False:
if step % 5 == 0:
visf = vis.make_file("square-%d-%06d" % (order, step))
#from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(visf, [
("rho",
discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields),
kind="numpy")),
("rho_u",
discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields),
kind="numpy")),
],
expressions=[
("p", "(0.4)*(e- 0.5*(rho_u*u))"),
],
time=t,
step=step)
visf.close()
if stepper.adaptive:
fields, t, taken_dt, next_dt = stepper(fields, t, dt, rhs)
else:
taken_dt = dt
fields = stepper(fields, t, dt, rhs)
dt = op.estimate_timestep(discr,
stepper=model_stepper,
t=0,
max_eigenvalue=max_eigval[0])
#fields = mode_filter(fields)
finally:
vis.close()
logmgr.save()
discr.close()
def inner_run(self):
t = 0
setup = self.setup
setup.hook_startup(self)
vis_order = setup.vis_order
if vis_order is None:
vis_order = setup.element_order
if vis_order != setup.element_order:
vis_discr = self.rcon.make_discretization(self.discr.mesh,
order=vis_order, debug=setup.dg_debug)
from hedge.discretization import Projector
vis_proj = Projector(self.discr, vis_discr)
else:
vis_discr = self.discr
def vis_proj(f):
return f
from hedge.visualization import SiloVisualizer
vis = SiloVisualizer(vis_discr)
fields = self.fields
self.observer.set_fields_and_state(fields, self.state)
from hedge.tools import make_obj_array
from pyrticle.cloud import TimesteppablePicState
def visualize(observer):
sub_timer = self.vis_timer.start_sub_timer()
import os.path
visf = vis.make_file(os.path.join(
setup.output_path, setup.vis_pattern % step))
self.method.add_to_vis(vis, visf, observer.state, time=t, step=step)
vis.add_data(visf,
[(name, vis_proj(fld))
for name, fld in setup.hook_vis_quantities(observer)],
time=t, step=step)
setup.hook_visualize(self, vis, visf, observer)
visf.close()
sub_timer.stop().submit()
from hedge.timestep.multirate_ab import TwoRateAdamsBashforthTimeStepper
if not isinstance(self.stepper, TwoRateAdamsBashforthTimeStepper):
def rhs(t, fields_and_state):
fields, ts_state = fields_and_state
state_f = lambda: ts_state.state
fields_f = lambda: fields
fields_rhs = (
self.f_rhs_calculator(t, fields_f, state_f)
+ self.p2f_rhs_calculator(t, fields_f, state_f))
state_rhs = (
self.p_rhs_calculator(t, fields_f, state_f)
+ self.f2p_rhs_calculator(t, fields_f, state_f))
return make_obj_array([fields_rhs, state_rhs])
step_args = (self.dt, rhs)
else:
def add_unwrap(rhs):
def unwrapping_rhs(t, fields, ts_state):
return rhs(t, fields, lambda: ts_state().state)
return unwrapping_rhs
step_args = ((
add_unwrap(self.f_rhs_calculator),
add_unwrap(self.p2f_rhs_calculator),
add_unwrap(self.f2p_rhs_calculator),
add_unwrap(self.p_rhs_calculator),
),)
y = make_obj_array([
fields,
TimesteppablePicState(self.method, self.state)
])
del self.state
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
max_steps=self.nsteps,
logmgr=self.logmgr,
max_dt_getter=lambda t: self.dt)
for step, t, dt in step_it:
self.method.upkeep(y[1].state)
if step % setup.vis_interval == 0:
visualize(self.observer)
y = self.stepper(y, t, *step_args)
fields, ts_state = y
self.observer.set_fields_and_state(fields, ts_state.state)
setup.hook_after_step(self, self.observer)
finally:
vis.close()
self.discr.close()
self.logmgr.save()
setup.hook_when_done(self)
def main():
from hedge.backends import guess_run_context
rcon = guess_run_context()
from hedge.tools import to_obj_array
if rcon.is_head_rank:
from hedge.mesh.generator import make_rect_mesh
mesh = make_rect_mesh((-5, -5), (5, 5), max_area=0.01)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [1]:
discr = rcon.make_discretization(mesh_data, order=order, default_scalar_type=numpy.float64)
from hedge.visualization import SiloVisualizer, VtkVisualizer
vis = VtkVisualizer(discr, rcon, "Sod2D-%d" % order)
# vis = SiloVisualizer(discr, rcon)
sod_field = Sod(gamma=1.4)
fields = sod_field.volume_interpolant(0, discr)
from hedge.models.gas_dynamics import GasDynamicsOperator
from hedge.mesh import TAG_ALL
op = GasDynamicsOperator(
dimensions=2,
gamma=sod_field.gamma,
mu=0.0,
prandtl=sod_field.prandtl,
bc_inflow=sod_field,
bc_outflow=sod_field,
bc_noslip=sod_field,
inflow_tag=TAG_ALL,
source=None,
)
euler_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = euler_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
# limiter setup ------------------------------------------------------------
from hedge.models.gas_dynamics import SlopeLimiter1NEuler
limiter = SlopeLimiter1NEuler(discr, sod_field.gamma, 2, op)
# integrator setup---------------------------------------------------------
from hedge.timestep import SSPRK3TimeStepper, RK4TimeStepper
stepper = SSPRK3TimeStepper(limiter=limiter)
# stepper = SSPRK3TimeStepper()
# stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, add_simulation_quantities, add_run_info
logmgr = LogManager("euler-%d.dat" % order, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# filter setup-------------------------------------------------------------
from hedge.discretization import Filter, ExponentialFilterResponseFunction
mode_filter = Filter(discr, ExponentialFilterResponseFunction(min_amplification=0.9, order=4))
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=1.0,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr, stepper=stepper, t=t, max_eigenvalue=max_eigval[0]),
)
for step, t, dt in step_it:
if step % 5 == 0:
# if False:
visf = vis.make_file("vortex-%d-%04d" % (order, step))
# true_fields = vortex.volume_interpolant(t, discr)
# from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(
visf,
[
("rho", discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields), kind="numpy")),
# ("true_rho", op.rho(true_fields)),
# ("true_e", op.e(true_fields)),
# ("true_rho_u", op.rho_u(true_fields)),
# ("true_u", op.u(true_fields)),
# ("rhs_rho", op.rho(rhs_fields)),
# ("rhs_e", op.e(rhs_fields)),
# ("rhs_rho_u", op.rho_u(rhs_fields)),
],
# expressions=[
# ("diff_rho", "rho-true_rho"),
# ("diff_e", "e-true_e"),
# ("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
# ("p", "0.4*(e- 0.5*(rho_u*u))"),
# ],
time=t,
step=step,
)
visf.close()
fields = stepper(fields, t, dt, rhs)
# fields = limiter(fields)
# fields = mode_filter(fields)
assert not numpy.isnan(numpy.sum(fields[0]))
finally:
vis.close()
logmgr.close()
discr.close()
# not solution, just to check against when making code changes
true_fields = sod_field.volume_interpolant(t, discr)
print discr.norm(fields - true_fields)
def main(write_output=True, flux_type_arg="upwind"):
from hedge.tools import mem_checkpoint
from math import sin, cos, pi, sqrt
from math import floor
from hedge.backends import guess_run_context
rcon = guess_run_context()
def f(x):
return sin(pi*x)
def u_analytic(x, el, t):
return f((-numpy.dot(v, x)/norm_v+t*norm_v))
def boundary_tagger(vertices, el, face_nr, all_v):
if numpy.dot(el.face_normals[face_nr], v) < 0:
return ["inflow"]
else:
return ["outflow"]
dim = 2
if dim == 1:
v = numpy.array([1])
if rcon.is_head_rank:
from hedge.mesh.generator import make_uniform_1d_mesh
mesh = make_uniform_1d_mesh(0, 2, 10, periodic=True)
elif dim == 2:
v = numpy.array([2,0])
if rcon.is_head_rank:
from hedge.mesh.generator import make_disk_mesh
mesh = make_disk_mesh(boundary_tagger=boundary_tagger)
elif dim == 3:
v = numpy.array([0,0,1])
if rcon.is_head_rank:
from hedge.mesh.generator import make_cylinder_mesh, make_ball_mesh, make_box_mesh
mesh = make_cylinder_mesh(max_volume=0.04, height=2, boundary_tagger=boundary_tagger,
periodic=False, radial_subdivisions=32)
else:
raise RuntimeError, "bad number of dimensions"
norm_v = la.norm(v)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
if dim != 1:
mesh_data = mesh_data.reordered_by("cuthill")
discr = rcon.make_discretization(mesh_data, order=4)
vis_discr = discr
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(vis_discr, rcon, "fld")
# operator setup ----------------------------------------------------------
from hedge.data import \
ConstantGivenFunction, \
TimeConstantGivenFunction, \
TimeDependentGivenFunction
from hedge.models.advection import StrongAdvectionOperator, WeakAdvectionOperator
op = WeakAdvectionOperator(v,
inflow_u=TimeDependentGivenFunction(u_analytic),
flux_type=flux_type_arg)
u = discr.interpolate_volume_function(lambda x, el: u_analytic(x, el, 0))
# timestep setup ----------------------------------------------------------
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper()
if rcon.is_head_rank:
print "%d elements" % len(discr.mesh.elements)
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "advection.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from hedge.log import Integral, LpNorm
u_getter = lambda: u
logmgr.add_quantity(Integral(u_getter, discr, name="int_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, p=1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# timestep loop -----------------------------------------------------------
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=3, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=u))
for step, t, dt in step_it:
if step % 5 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, [
("u", discr.convert_volume(u, kind="numpy")),
], time=t, step=step)
visf.close()
u = stepper(u, t, dt, rhs)
true_u = discr.interpolate_volume_function(lambda x, el: u_analytic(x, el, t))
print discr.norm(u-true_u)
assert discr.norm(u-true_u) < 1e-2
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def run_convergence_test_advec(dtype, debug_output=False):
"""Test whether 2/3D advection actually converges"""
from hedge.mesh.generator import make_ball_mesh, make_box_mesh, make_rect_mesh
from hedge.timestep import RK4TimeStepper
from hedge.tools import EOCRecorder
from math import sin, pi, sqrt
from hedge.models.advection import StrongAdvectionOperator
from hedge.data import TimeDependentGivenFunction
from hedge.visualization import SiloVisualizer
from hedge.backends import guess_run_context
rcon = guess_run_context(["mpi"])
# note: x component must remain zero because x-periodicity is used
v = numpy.array([0.0,0.9,0.3])
def f(x):
return sin(x)
def u_analytic(x, el, t):
return f((numpy.dot(-v[:dims],x)/la.norm(v[:dims])+t*la.norm(v[:dims])))
def boundary_tagger(vertices, el, face_nr, points):
face_normal = el.face_normals[face_nr]
if numpy.dot(face_normal, v[:len(face_normal)]) < 0:
return ["inflow"]
else:
return ["outflow"]
for i_mesh, mesh in enumerate([
# 2D semiperiodic
make_rect_mesh(b=(2*pi,3), max_area=0.4,
periodicity=(True, False),
subdivisions=(5,10),
boundary_tagger=boundary_tagger,
),
# 3D x-periodic
make_box_mesh((0,0,0), (2*pi, 2, 2), max_volume=0.4,
periodicity=(True, False, False),
boundary_tagger=boundary_tagger,
),
# non-periodic
make_ball_mesh(r=pi,
boundary_tagger=boundary_tagger, max_volume=0.7),
]):
for flux_type in StrongAdvectionOperator.flux_types:
for random_partition in [True, False]:
eoc_rec = EOCRecorder()
if random_partition:
# Distribute elements randomly across nodes.
# This is bad, efficiency-wise, but it puts stress
# on the parallel implementation, which is desired here.
# Another main point of this is to force the code to split
# a periodic face pair across nodes.
from random import choice
partition = [choice(rcon.ranks) for el in mesh.elements]
else:
partition = None
for order in [1,2,3,4]:
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh, partition)
else:
mesh_data = rcon.receive_mesh()
dims = mesh.points.shape[1]
discr = rcon.make_discretization(mesh_data, order=order,
default_scalar_type=dtype)
op = StrongAdvectionOperator(v[:dims],
inflow_u=TimeDependentGivenFunction(u_analytic),
flux_type=flux_type)
if debug_output:
vis = SiloVisualizer(discr, rcon)
u = discr.interpolate_volume_function(
lambda x, el: u_analytic(x, el, 0))
ic = u.copy()
if debug_output and rcon.is_head_rank:
print "#elements=%d" % len(mesh.elements)
test_name = "test-%s-o%d-m%d-r%s" % (
flux_type, order, i_mesh, random_partition)
rhs = op.bind(discr)
stepper = RK4TimeStepper(dtype=dtype)
from hedge.timestep import times_and_steps
final_time = 1
step_it = times_and_steps(
final_time=final_time,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=u))
for step, t, dt in step_it:
u = stepper(u, t, dt, rhs)
assert u.dtype == dtype
u_true = discr.interpolate_volume_function(
lambda x, el: u_analytic(x, el, final_time))
error = u-u_true
l2_error = discr.norm(error)
if debug_output:
visf = vis.make_file(test_name+"-final")
vis.add_data(visf, [
("u", u),
("u_true", u_true),
("ic", ic)])
visf.close()
eoc_rec.add_data_point(order, l2_error)
if debug_output and rcon.is_head_rank:
print "%s\n%s\n" % (flux_type.upper(), "-" * len(flux_type))
print eoc_rec.pretty_print(abscissa_label="Poly. Order",
error_label="L2 Error")
assert eoc_rec.estimate_order_of_convergence()[0,1] > 3
assert eoc_rec.estimate_order_of_convergence(2)[-1,1] > 7
def main():
from hedge.backends import guess_run_context
rcon = guess_run_context(["cuda"])
if rcon.is_head_rank:
mesh = make_boxmesh()
#from hedge.mesh import make_rect_mesh
#mesh = make_rect_mesh(
# boundary_tagger=lambda fvi, el, fn, all_v: ["inflow"])
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3]:
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script("..")
from gas_dynamics_initials import UniformMachFlow
box = UniformMachFlow(angle_of_attack=0)
from hedge.models.gas_dynamics import GasDynamicsOperator
op = GasDynamicsOperator(dimensions=3,
gamma=box.gamma, mu=box.mu,
prandtl=box.prandtl, spec_gas_const=box.spec_gas_const,
bc_inflow=box, bc_outflow=box, bc_noslip=box,
inflow_tag="inflow", outflow_tag="outflow", noslip_tag="noslip")
discr = rcon.make_discretization(mesh_data, order=order,
debug=[
#"cuda_no_plan",
#"cuda_dump_kernels",
#"dump_dataflow_graph",
#"dump_optemplate_stages",
#"dump_dataflow_graph",
#"print_op_code",
"cuda_no_plan_el_local",
],
default_scalar_type=numpy.float32,
tune_for=op.op_template())
from hedge.visualization import SiloVisualizer, VtkVisualizer # noqa
#vis = VtkVisualizer(discr, rcon, "shearflow-%d" % order)
vis = SiloVisualizer(discr, rcon)
fields = box.volume_interpolant(0, discr)
navierstokes_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = navierstokes_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
logmgr = LogManager("navierstokes-%d.dat" % order, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
from pytools.log import LogQuantity
class ChangeSinceLastStep(LogQuantity):
"""Records the change of a variable between a time step and the previous
one"""
def __init__(self, name="change"):
LogQuantity.__init__(self, name, "1", "Change since last time step")
self.old_fields = 0
def __call__(self):
result = discr.norm(fields - self.old_fields)
self.old_fields = fields
return result
logmgr.add_quantity(ChangeSinceLastStep())
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=200,
#max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
if step % 200 == 0:
#if False:
visf = vis.make_file("box-%d-%06d" % (order, step))
#rhs_fields = rhs(t, fields)
vis.add_data(visf,
[
("rho", discr.convert_volume(
op.rho(fields), kind="numpy")),
("e", discr.convert_volume(
op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(
op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(
op.u(fields), kind="numpy")),
# ("rhs_rho", discr.convert_volume(
# op.rho(rhs_fields), kind="numpy")),
# ("rhs_e", discr.convert_volume(
# op.e(rhs_fields), kind="numpy")),
# ("rhs_rho_u", discr.convert_volume(
# op.rho_u(rhs_fields), kind="numpy")),
],
expressions=[
("p", "(0.4)*(e- 0.5*(rho_u*u))"),
],
time=t, step=step
)
visf.close()
fields = stepper(fields, t, dt, rhs)
finally:
vis.close()
logmgr.save()
discr.close()
def main():
from hedge.backends import guess_run_context
rcon = guess_run_context()
from hedge.tools import to_obj_array
if rcon.is_head_rank:
from hedge.mesh.generator import make_rect_mesh
mesh = make_rect_mesh((-5, -5), (5, 5), max_area=0.01)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [1]:
discr = rcon.make_discretization(mesh_data,
order=order,
default_scalar_type=numpy.float64)
from hedge.visualization import SiloVisualizer, VtkVisualizer
vis = VtkVisualizer(discr, rcon, "Sod2D-%d" % order)
#vis = SiloVisualizer(discr, rcon)
sod_field = Sod(gamma=1.4)
fields = sod_field.volume_interpolant(0, discr)
from hedge.models.gas_dynamics import GasDynamicsOperator
from hedge.mesh import TAG_ALL
op = GasDynamicsOperator(dimensions=2,
gamma=sod_field.gamma,
mu=0.0,
prandtl=sod_field.prandtl,
bc_inflow=sod_field,
bc_outflow=sod_field,
bc_noslip=sod_field,
inflow_tag=TAG_ALL,
source=None)
euler_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = euler_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
# limiter setup ------------------------------------------------------------
from hedge.models.gas_dynamics import SlopeLimiter1NEuler
limiter = SlopeLimiter1NEuler(discr, sod_field.gamma, 2, op)
# integrator setup---------------------------------------------------------
from hedge.timestep import SSPRK3TimeStepper, RK4TimeStepper
stepper = SSPRK3TimeStepper(limiter=limiter)
#stepper = SSPRK3TimeStepper()
#stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
logmgr = LogManager("euler-%d.dat" % order, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# filter setup-------------------------------------------------------------
from hedge.discretization import Filter, ExponentialFilterResponseFunction
mode_filter = Filter(
discr,
ExponentialFilterResponseFunction(min_amplification=0.9, order=4))
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=1.0,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
if step % 5 == 0:
#if False:
visf = vis.make_file("vortex-%d-%04d" % (order, step))
#true_fields = vortex.volume_interpolant(t, discr)
#from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(
visf,
[
("rho",
discr.convert_volume(op.rho(fields),
kind="numpy")),
("e",
discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u",
discr.convert_volume(op.rho_u(fields),
kind="numpy")),
("u",
discr.convert_volume(op.u(fields), kind="numpy")),
#("true_rho", op.rho(true_fields)),
#("true_e", op.e(true_fields)),
#("true_rho_u", op.rho_u(true_fields)),
#("true_u", op.u(true_fields)),
#("rhs_rho", op.rho(rhs_fields)),
#("rhs_e", op.e(rhs_fields)),
#("rhs_rho_u", op.rho_u(rhs_fields)),
],
#expressions=[
#("diff_rho", "rho-true_rho"),
#("diff_e", "e-true_e"),
#("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
#("p", "0.4*(e- 0.5*(rho_u*u))"),
#],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
# fields = limiter(fields)
# fields = mode_filter(fields)
assert not numpy.isnan(numpy.sum(fields[0]))
finally:
vis.close()
logmgr.close()
discr.close()
# not solution, just to check against when making code changes
true_fields = sod_field.volume_interpolant(t, discr)
print discr.norm(fields - true_fields)
def main(write_output=True):
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script("..")
from hedge.backends import guess_run_context
rcon = guess_run_context()
from hedge.tools import EOCRecorder
eoc_rec = EOCRecorder()
if rcon.is_head_rank:
from hedge.mesh.generator import \
make_rect_mesh, \
make_centered_regular_rect_mesh
refine = 4
mesh = make_centered_regular_rect_mesh((0, -5), (10, 5),
n=(9, 9),
post_refine_factor=refine)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3, 4, 5]:
from gas_dynamics_initials import Vortex
flow = Vortex()
from hedge.models.gas_dynamics import (GasDynamicsOperator,
PolytropeEOS, GammaLawEOS)
from hedge.mesh import TAG_ALL
# works equally well for GammaLawEOS
op = GasDynamicsOperator(dimensions=2,
mu=flow.mu,
prandtl=flow.prandtl,
spec_gas_const=flow.spec_gas_const,
equation_of_state=PolytropeEOS(flow.gamma),
bc_inflow=flow,
bc_outflow=flow,
bc_noslip=flow,
inflow_tag=TAG_ALL,
source=None)
discr = rcon.make_discretization(mesh_data,
order=order,
default_scalar_type=numpy.float64,
quad_min_degrees={
"gasdyn_vol": 3 * order,
"gasdyn_face": 3 * order,
},
tune_for=op.op_template(),
debug=["cuda_no_plan"])
from hedge.visualization import SiloVisualizer, VtkVisualizer
vis = VtkVisualizer(discr, rcon, "vortex-%d" % order)
#vis = SiloVisualizer(discr, rcon)
fields = flow.volume_interpolant(0, discr)
euler_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = euler_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
# limiter ------------------------------------------------------------
from hedge.models.gas_dynamics import SlopeLimiter1NEuler
limiter = SlopeLimiter1NEuler(discr, flow.gamma, 2, op)
from hedge.timestep.runge_kutta import SSP3TimeStepper
#stepper = SSP3TimeStepper(limiter=limiter)
stepper = SSP3TimeStepper(
vector_primitive_factory=discr.get_vector_primitive_factory())
#from hedge.timestep import RK4TimeStepper
#stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = "euler-%d.dat" % order
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
try:
final_time = flow.final_time
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
print "run until t=%g" % final_time
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
#if False:
visf = vis.make_file("vortex-%d-%04d" % (order, step))
#true_fields = vortex.volume_interpolant(t, discr)
from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(
visf,
[
("rho",
discr.convert_volume(op.rho(fields),
kind="numpy")),
("e",
discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u",
discr.convert_volume(op.rho_u(fields),
kind="numpy")),
("u",
discr.convert_volume(op.u(fields), kind="numpy")),
#("true_rho", discr.convert_volume(op.rho(true_fields), kind="numpy")),
#("true_e", discr.convert_volume(op.e(true_fields), kind="numpy")),
#("true_rho_u", discr.convert_volume(op.rho_u(true_fields), kind="numpy")),
#("true_u", discr.convert_volume(op.u(true_fields), kind="numpy")),
#("rhs_rho", discr.convert_volume(op.rho(rhs_fields), kind="numpy")),
#("rhs_e", discr.convert_volume(op.e(rhs_fields), kind="numpy")),
#("rhs_rho_u", discr.convert_volume(op.rho_u(rhs_fields), kind="numpy")),
],
#expressions=[
#("diff_rho", "rho-true_rho"),
#("diff_e", "e-true_e"),
#("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
#("p", "0.4*(e- 0.5*(rho_u*u))"),
#],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
#fields = limiter(fields)
assert not numpy.isnan(numpy.sum(fields[0]))
true_fields = flow.volume_interpolant(final_time, discr)
l2_error = discr.norm(fields - true_fields)
l2_error_rho = discr.norm(op.rho(fields) - op.rho(true_fields))
l2_error_e = discr.norm(op.e(fields) - op.e(true_fields))
l2_error_rhou = discr.norm(
op.rho_u(fields) - op.rho_u(true_fields))
l2_error_u = discr.norm(op.u(fields) - op.u(true_fields))
eoc_rec.add_data_point(order, l2_error)
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
logmgr.set_constant("l2_error", l2_error)
logmgr.set_constant("l2_error_rho", l2_error_rho)
logmgr.set_constant("l2_error_e", l2_error_e)
logmgr.set_constant("l2_error_rhou", l2_error_rhou)
logmgr.set_constant("l2_error_u", l2_error_u)
logmgr.set_constant("refinement", refine)
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
# after order loop
assert eoc_rec.estimate_order_of_convergence()[0, 1] > 6
def main():
from hedge.backends import guess_run_context
rcon = guess_run_context( ["cuda", "mpi"])
if rcon.is_head_rank:
mesh = make_wingmesh()
#from hedge.mesh import make_rect_mesh
#mesh = make_rect_mesh(
# boundary_tagger=lambda fvi, el, fn, all_v: ["inflow"])
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3]:
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script("..")
from gas_dynamics_initials import UniformMachFlow
wing = UniformMachFlow(angle_of_attack=0)
from hedge.models.gas_dynamics import GasDynamicsOperator
op = GasDynamicsOperator(dimensions=3,
gamma=wing.gamma, mu=wing.mu,
prandtl=wing.prandtl, spec_gas_const=wing.spec_gas_const,
bc_inflow=wing, bc_outflow=wing, bc_noslip=wing,
inflow_tag="inflow", outflow_tag="outflow", noslip_tag="noslip")
discr = rcon.make_discretization(mesh_data, order=order,
debug=["cuda_no_plan",
#"cuda_dump_kernels",
#"dump_dataflow_graph",
#"dump_optemplate_stages",
#"dump_dataflow_graph",
#"print_op_code"
"cuda_no_metis",
],
default_scalar_type=numpy.float64,
tune_for=op.op_template())
from hedge.visualization import SiloVisualizer, VtkVisualizer
#vis = VtkVisualizer(discr, rcon, "shearflow-%d" % order)
vis = SiloVisualizer(discr, rcon)
fields = wing.volume_interpolant(0, discr)
navierstokes_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = navierstokes_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
logmgr = LogManager("navierstokes-%d.dat" % order, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=200,
#max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: 0.6 * op.estimate_timestep(discr,
stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
if step % 200 == 0:
#if False:
visf = vis.make_file("wing-%d-%06d" % (order, step))
#rhs_fields = rhs(t, fields)
from pyvisfile.silo import DB_VARTYPE_VECTOR
from hedge.discretization import ones_on_boundary
vis.add_data(visf,
[
("rho", discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields), kind="numpy")),
#("rhs_rho", discr.convert_volume(op.rho(rhs_fields), kind="numpy")),
#("rhs_e", discr.convert_volume(op.e(rhs_fields), kind="numpy")),
#("rhs_rho_u", discr.convert_volume(op.rho_u(rhs_fields), kind="numpy")),
],
expressions=[
("p", "(0.4)*(e- 0.5*(rho_u*u))"),
],
time=t, step=step
)
visf.close()
fields = stepper(fields, t, dt, rhs)
t += dt
finally:
vis.close()
logmgr.save()
discr.close()
def main():
from hedge.backends import guess_run_context
rcon = guess_run_context(["cuda", "mpi"])
if rcon.is_head_rank:
mesh = make_wingmesh()
#from hedge.mesh import make_rect_mesh
#mesh = make_rect_mesh(
# boundary_tagger=lambda fvi, el, fn, all_v: ["inflow"])
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3]:
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script("..")
from gas_dynamics_initials import UniformMachFlow
wing = UniformMachFlow(angle_of_attack=0)
from hedge.models.gas_dynamics import GasDynamicsOperator
op = GasDynamicsOperator(dimensions=3,
gamma=wing.gamma,
mu=wing.mu,
prandtl=wing.prandtl,
spec_gas_const=wing.spec_gas_const,
bc_inflow=wing,
bc_outflow=wing,
bc_noslip=wing,
inflow_tag="inflow",
outflow_tag="outflow",
noslip_tag="noslip")
discr = rcon.make_discretization(
mesh_data,
order=order,
debug=[
"cuda_no_plan",
#"cuda_dump_kernels",
#"dump_dataflow_graph",
#"dump_optemplate_stages",
#"dump_dataflow_graph",
#"print_op_code"
"cuda_no_metis",
],
default_scalar_type=numpy.float64,
tune_for=op.op_template())
from hedge.visualization import SiloVisualizer, VtkVisualizer
#vis = VtkVisualizer(discr, rcon, "shearflow-%d" % order)
vis = SiloVisualizer(discr, rcon)
fields = wing.volume_interpolant(0, discr)
navierstokes_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = navierstokes_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
logmgr = LogManager("navierstokes-%d.dat" % order, "w",
rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=200,
#max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: 0.6 * op.estimate_timestep(
discr, stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
if step % 200 == 0:
#if False:
visf = vis.make_file("wing-%d-%06d" % (order, step))
#rhs_fields = rhs(t, fields)
from pyvisfile.silo import DB_VARTYPE_VECTOR
from hedge.discretization import ones_on_boundary
vis.add_data(
visf,
[
("rho",
discr.convert_volume(op.rho(fields),
kind="numpy")),
("e",
discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u",
discr.convert_volume(op.rho_u(fields),
kind="numpy")),
("u",
discr.convert_volume(op.u(fields), kind="numpy")),
#("rhs_rho", discr.convert_volume(op.rho(rhs_fields), kind="numpy")),
#("rhs_e", discr.convert_volume(op.e(rhs_fields), kind="numpy")),
#("rhs_rho_u", discr.convert_volume(op.rho_u(rhs_fields), kind="numpy")),
],
expressions=[
("p", "(0.4)*(e- 0.5*(rho_u*u))"),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
t += dt
finally:
vis.close()
logmgr.save()
discr.close()
def main(write_output=True):
from math import sin, cos, pi, exp, sqrt
from hedge.data import TimeConstantGivenFunction, \
ConstantGivenFunction
from hedge.backends import guess_run_context
rcon = guess_run_context()
dim = 2
def boundary_tagger(fvi, el, fn, all_v):
if el.face_normals[fn][0] > 0:
return ["dirichlet"]
else:
return ["neumann"]
if dim == 2:
if rcon.is_head_rank:
from hedge.mesh.generator import make_disk_mesh
mesh = make_disk_mesh(r=0.5, boundary_tagger=boundary_tagger)
elif dim == 3:
if rcon.is_head_rank:
from hedge.mesh.generator import make_ball_mesh
mesh = make_ball_mesh(max_volume=0.001)
else:
raise RuntimeError, "bad number of dimensions"
if rcon.is_head_rank:
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
discr = rcon.make_discretization(mesh_data,
order=3,
debug=["cuda_no_plan"],
default_scalar_type=numpy.float64)
if write_output:
from hedge.visualization import VtkVisualizer
vis = VtkVisualizer(discr, rcon, "fld")
def u0(x, el):
if la.norm(x) < 0.2:
return 1
else:
return 0
def coeff(x, el):
if x[0] < 0:
return 0.25
else:
return 1
def dirichlet_bc(t, x):
return 0
def neumann_bc(t, x):
return 2
from hedge.models.diffusion import DiffusionOperator
op = DiffusionOperator(
discr.dimensions,
#coeff=coeff,
dirichlet_tag="dirichlet",
dirichlet_bc=TimeConstantGivenFunction(ConstantGivenFunction(0)),
neumann_tag="neumann",
neumann_bc=TimeConstantGivenFunction(ConstantGivenFunction(1)))
u = discr.interpolate_volume_function(u0)
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "heat.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
from hedge.log import LpNorm
u_getter = lambda: u
logmgr.add_quantity(LpNorm(u_getter, discr, 1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# timestep loop -----------------------------------------------------------
from hedge.timestep.runge_kutta import LSRK4TimeStepper, ODE45TimeStepper
from hedge.timestep.dumka3 import Dumka3TimeStepper
#stepper = LSRK4TimeStepper()
stepper = Dumka3TimeStepper(
3,
rtol=1e-6,
rcon=rcon,
vector_primitive_factory=discr.get_vector_primitive_factory(),
dtype=discr.default_scalar_type)
#stepper = ODE45TimeStepper(rtol=1e-6, rcon=rcon,
#vector_primitive_factory=discr.get_vector_primitive_factory(),
#dtype=discr.default_scalar_type)
stepper.add_instrumentation(logmgr)
rhs = op.bind(discr)
try:
next_dt = op.estimate_timestep(discr,
stepper=LSRK4TimeStepper(),
t=0,
fields=u)
from hedge.timestep import times_and_steps
step_it = times_and_steps(final_time=0.1,
logmgr=logmgr,
max_dt_getter=lambda t: next_dt,
taken_dt_getter=lambda: taken_dt)
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, [
("u", discr.convert_volume(u, kind="numpy")),
],
time=t,
step=step)
visf.close()
u, t, taken_dt, next_dt = stepper(u, t, next_dt, rhs)
#u = stepper(u, t, dt, rhs)
assert discr.norm(u) < 1
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True,
flux_type_arg="central",
use_quadrature=True,
final_time=20):
from math import sin, cos, pi, sqrt
from hedge.backends import guess_run_context
rcon = guess_run_context()
# mesh setup --------------------------------------------------------------
if rcon.is_head_rank:
#from hedge.mesh.generator import make_disk_mesh
#mesh = make_disk_mesh()
from hedge.mesh.generator import make_rect_mesh
mesh = make_rect_mesh(a=(-1, -1), b=(1, 1), max_area=0.008)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
# space-time-dependent-velocity-field -------------------------------------
# simple vortex
class TimeDependentVField:
""" `TimeDependentVField` is a callable expecting `(x, t)` representing space and time
`x` is of the length of the spatial dimension and `t` is the time."""
shape = (2, )
def __call__(self, pt, el, t):
x, y = pt
# Correction-Factor to make the speed zero on the on the boundary
#fac = (1-x**2)*(1-y**2)
fac = 1.
return numpy.array([-y * fac, x * fac]) * cos(pi * t)
class VField:
""" `VField` is a callable expecting `(x)` representing space
`x` is of the length of the spatial dimension."""
shape = (2, )
def __call__(self, pt, el):
x, y = pt
# Correction-Factor to make the speed zero on the on the boundary
#fac = (1-x**2)*(1-y**2)
fac = 1.
return numpy.array([-y * fac, x * fac])
# space-time-dependent State BC (optional)-----------------------------------
class TimeDependentBc_u:
""" space and time dependent BC for state u"""
def __call__(self, pt, el, t):
x, y = pt
if t <= 0.5:
if x > 0:
return 1
else:
return 0
else:
return 0
class Bc_u:
""" Only space dependent BC for state u"""
def __call__(seld, pt, el):
x, y = pt
if x > 0:
return 1
else:
return 0
# operator setup ----------------------------------------------------------
# In the operator setup it is possible to switch between a only space
# dependent velocity field `VField` or a time and space dependent
# `TimeDependentVField`.
# For `TimeDependentVField`: advec_v=TimeDependentGivenFunction(VField())
# For `VField`: advec_v=TimeConstantGivenFunction(GivenFunction(VField()))
# Same for the Bc_u Function! If you don't define Bc_u then the BC for u = 0.
from hedge.data import \
ConstantGivenFunction, \
TimeConstantGivenFunction, \
TimeDependentGivenFunction, \
GivenFunction
from hedge.models.advection import VariableCoefficientAdvectionOperator
op = VariableCoefficientAdvectionOperator(
mesh.dimensions,
#advec_v=TimeDependentGivenFunction(
# TimeDependentVField()),
advec_v=TimeConstantGivenFunction(GivenFunction(VField())),
#bc_u_f=TimeDependentGivenFunction(
# TimeDependentBc_u()),
bc_u_f=TimeConstantGivenFunction(GivenFunction(Bc_u())),
flux_type=flux_type_arg)
# discretization setup ----------------------------------------------------
order = 5
if use_quadrature:
quad_min_degrees = {"quad": 3 * order}
else:
quad_min_degrees = {}
discr = rcon.make_discretization(
mesh_data,
order=order,
default_scalar_type=numpy.float64,
debug=["cuda_no_plan"],
quad_min_degrees=quad_min_degrees,
tune_for=op.op_template(),
)
vis_discr = discr
# visualization setup -----------------------------------------------------
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(vis_discr, rcon, "fld")
# initial condition -------------------------------------------------------
if True:
def initial(pt, el):
# Gauss pulse
from math import exp
x = (pt - numpy.array([0.3, 0.5])) * 8
return exp(-numpy.dot(x, x))
else:
def initial(pt, el):
# Rectangle
x, y = pt
if abs(x) < 0.5 and abs(y) < 0.2:
return 2
else:
return 1
u = discr.interpolate_volume_function(initial)
# timestep setup ----------------------------------------------------------
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper(
vector_primitive_factory=discr.get_vector_primitive_factory())
if rcon.is_head_rank:
print "%d elements" % len(discr.mesh.elements)
# filter setup-------------------------------------------------------------
from hedge.discretization import ExponentialFilterResponseFunction
from hedge.optemplate.operators import FilterOperator
mode_filter = FilterOperator(
ExponentialFilterResponseFunction(min_amplification=0.9,order=4))\
.bind(discr)
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "space-dep.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from hedge.log import Integral, LpNorm
u_getter = lambda: u
logmgr.add_quantity(Integral(u_getter, discr, name="int_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, p=1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# Initialize v for data output:
v = op.advec_v.volume_interpolant(0, discr)
# timestep loop -----------------------------------------------------------
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(final_time=final_time,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, fields=u))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf,
[("u", discr.convert_volume(u, kind="numpy")),
("v", discr.convert_volume(v, kind="numpy"))],
time=t,
step=step)
visf.close()
u = stepper(u, t, dt, rhs)
# We're feeding in a discontinuity through the BCs.
# Quadrature does not help with shock capturing--
# therefore we do need to filter here, regardless
# of whether quadrature is enabled.
u = mode_filter(u)
assert discr.norm(u) < 10
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True):
from math import sqrt, pi, exp
from os.path import join
from hedge.backends import guess_run_context
rcon = guess_run_context()
epsilon0 = 8.8541878176e-12 # C**2 / (N m**2)
mu0 = 4 * pi * 1e-7 # N/A**2.
epsilon = 1 * epsilon0
mu = 1 * mu0
output_dir = "maxwell-2d"
import os
if not os.access(output_dir, os.F_OK):
os.makedirs(output_dir)
from hedge.mesh.generator import make_disk_mesh
mesh = make_disk_mesh(r=0.5, max_area=1e-3)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
class CurrentSource:
shape = (3, )
def __call__(self, x, el):
return [0, 0, exp(-80 * la.norm(x))]
order = 3
final_time = 1e-8
discr = rcon.make_discretization(mesh_data,
order=order,
debug=["cuda_no_plan"])
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, join(output_dir, "em-%d" % order))
if rcon.is_head_rank:
print "order %d" % order
print "#elements=", len(mesh.elements)
from hedge.mesh import TAG_ALL, TAG_NONE
from hedge.models.em import TMMaxwellOperator
from hedge.data import make_tdep_given, TimeIntervalGivenFunction
op = TMMaxwellOperator(epsilon,
mu,
flux_type=1,
current=TimeIntervalGivenFunction(
make_tdep_given(CurrentSource()),
off_time=final_time / 10),
absorb_tag=TAG_ALL,
pec_tag=TAG_NONE)
fields = op.assemble_eh(discr=discr)
from hedge.timestep import LSRK4TimeStepper
stepper = LSRK4TimeStepper()
from time import time
last_tstep = time()
t = 0
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = join(output_dir, "maxwell-%d.dat" % order)
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
from hedge.log import EMFieldGetter, add_em_quantities
field_getter = EMFieldGetter(discr, op, lambda: fields)
add_em_quantities(logmgr, op, field_getter)
logmgr.add_watches(
["step.max", "t_sim.max", ("W_field", "W_el+W_mag"), "t_step.max"])
# timestep loop -------------------------------------------------------
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
e, h = op.split_eh(fields)
visf = vis.make_file(
join(output_dir, "em-%d-%04d" % (order, step)))
vis.add_data(visf, [
("e", discr.convert_volume(e, "numpy")),
("h", discr.convert_volume(h, "numpy")),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 0.03
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True, flux_type_arg="upwind",
#case = CenteredStationaryTestCase(),
#case = OffCenterStationaryTestCase(),
#case = OffCenterMigratingTestCase(),
case = ExactTestCase(),
):
from hedge.backends import guess_run_context
rcon = guess_run_context()
order = 3
if rcon.is_head_rank:
if True:
from hedge.mesh.generator import make_uniform_1d_mesh
mesh = make_uniform_1d_mesh(case.a, case.b, 20, periodic=True)
else:
from hedge.mesh.generator import make_rect_mesh
print (pi*2)/(11*5*2)
mesh = make_rect_mesh((-pi, -1), (pi, 1),
periodicity=(True, True),
subdivisions=(11,5),
max_area=(pi*2)/(11*5*2)
)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
discr = rcon.make_discretization(mesh_data, order=order,
quad_min_degrees={"quad": 3*order})
if write_output:
from hedge.visualization import VtkVisualizer
vis = VtkVisualizer(discr, rcon, "fld")
# operator setup ----------------------------------------------------------
from hedge.second_order import IPDGSecondDerivative
from hedge.models.burgers import BurgersOperator
op = BurgersOperator(mesh.dimensions,
viscosity_scheme=IPDGSecondDerivative())
if rcon.is_head_rank:
print "%d elements" % len(discr.mesh.elements)
# exact solution ----------------------------------------------------------
import pymbolic
var = pymbolic.var
u = discr.interpolate_volume_function(lambda x, el: case.u0(x[0]))
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "burgers.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
from hedge.log import LpNorm
u_getter = lambda: u
logmgr.add_quantity(LpNorm(u_getter, discr, p=1, name="l1_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l1_u", "t_step.max"])
# timestep loop -----------------------------------------------------------
rhs = op.bind(discr)
from hedge.timestep.runge_kutta import ODE45TimeStepper, LSRK4TimeStepper
stepper = ODE45TimeStepper()
stepper.add_instrumentation(logmgr)
try:
from hedge.timestep import times_and_steps
# for visc=0.01
#stab_fac = 0.1 # RK4
#stab_fac = 1.6 # dumka3(3), central
#stab_fac = 3 # dumka3(4), central
#stab_fac = 0.01 # RK4
stab_fac = 0.2 # dumka3(3), central
#stab_fac = 3 # dumka3(4), central
dt = stab_fac*op.estimate_timestep(discr,
stepper=LSRK4TimeStepper(), t=0, fields=u)
step_it = times_and_steps(
final_time=case.final_time, logmgr=logmgr, max_dt_getter=lambda t: dt)
from hedge.optemplate import InverseVandermondeOperator
inv_vdm = InverseVandermondeOperator().bind(discr)
for step, t, dt in step_it:
if step % 3 == 0 and write_output:
if hasattr(case, "u_exact"):
extra_fields = [
("u_exact",
discr.interpolate_volume_function(
lambda x, el: case.u_exact(x[0], t)))]
else:
extra_fields = []
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, [
("u", u),
] + extra_fields,
time=t,
step=step)
visf.close()
u = stepper(u, t, dt, rhs)
if isinstance(case, ExactTestCase):
assert discr.norm(u, 1) < 50
finally:
if write_output:
vis.close()
logmgr.save()
def main():
from hedge.backends import guess_run_context
rcon = guess_run_context(
#["cuda"]
)
from hedge.tools import EOCRecorder, to_obj_array
eoc_rec = EOCRecorder()
def boundary_tagger(vertices, el, face_nr, all_v):
return ["inflow"]
if rcon.is_head_rank:
from hedge.mesh import make_rect_mesh, \
make_centered_regular_rect_mesh
#mesh = make_rect_mesh((0,0), (10,1), max_area=0.01)
refine = 1
mesh = make_centered_regular_rect_mesh(
(0, 0),
(10, 1),
n=(20, 4),
#periodicity=(True, False),
post_refine_factor=refine,
boundary_tagger=boundary_tagger)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3]:
discr = rcon.make_discretization(mesh_data,
order=order,
default_scalar_type=numpy.float64)
from hedge.visualization import SiloVisualizer, VtkVisualizer
#vis = VtkVisualizer(discr, rcon, "shearflow-%d" % order)
vis = SiloVisualizer(discr, rcon)
shearflow = SteadyShearFlow()
fields = shearflow.volume_interpolant(0, discr)
gamma, mu, prandtl, spec_gas_const = shearflow.properties()
from hedge.models.gas_dynamics import GasDynamicsOperator
op = GasDynamicsOperator(dimensions=2,
gamma=gamma,
mu=mu,
prandtl=prandtl,
spec_gas_const=spec_gas_const,
bc_inflow=shearflow,
bc_outflow=shearflow,
bc_noslip=shearflow,
inflow_tag="inflow",
outflow_tag="outflow",
noslip_tag="noslip")
navierstokes_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = navierstokes_ex(t, q)
max_eigval[0] = speed
return ode_rhs
# needed to get first estimate of maximum eigenvalue
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
logmgr = LogManager("navierstokes-cpu-%d-%d.dat" % (order, refine),
"w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=0.3,
#max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
if step % 10 == 0:
#if False:
visf = vis.make_file("shearflow-%d-%04d" % (order, step))
#true_fields = shearflow.volume_interpolant(t, discr)
from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(
visf,
[
("rho",
discr.convert_volume(op.rho(fields),
kind="numpy")),
("e",
discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u",
discr.convert_volume(op.rho_u(fields),
kind="numpy")),
("u",
discr.convert_volume(op.u(fields), kind="numpy")),
#("true_rho", discr.convert_volume(op.rho(true_fields), kind="numpy")),
#("true_e", discr.convert_volume(op.e(true_fields), kind="numpy")),
#("true_rho_u", discr.convert_volume(op.rho_u(true_fields), kind="numpy")),
#("true_u", discr.convert_volume(op.u(true_fields), kind="numpy")),
],
expressions=[
#("diff_rho", "rho-true_rho"),
#("diff_e", "e-true_e"),
#("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
("p", "0.4*(e- 0.5*(rho_u*u))"),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
true_fields = shearflow.volume_interpolant(t, discr)
l2_error = discr.norm(op.u(fields) - op.u(true_fields))
eoc_rec.add_data_point(order, l2_error)
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
logmgr.set_constant("l2_error", l2_error)
finally:
vis.close()
logmgr.save()
discr.close()
def main(write_output=True,
flux_type_arg="upwind", dtype=numpy.float64, debug=[]):
from pytools.stopwatch import Job
from math import sin, cos, pi, exp, sqrt
from hedge.backends import guess_run_context
rcon = guess_run_context()
if rcon.is_head_rank:
from hedge.mesh.reader.gmsh import generate_gmsh
mesh = generate_gmsh(GEOMETRY, 2,
allow_internal_boundaries=True)
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
discr = rcon.make_discretization(mesh_data, order=4, debug=debug,
default_scalar_type=dtype)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper(dtype=dtype)
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "fld")
def source_u(x, el):
return exp(-numpy.dot(x, x)*128)
from hedge.models.wave import StrongWaveOperator
from hedge.mesh import TAG_ALL, TAG_NONE
from hedge.data import \
make_tdep_given, \
TimeHarmonicGivenFunction, \
TimeIntervalGivenFunction
op = StrongWaveOperator(-1, discr.dimensions,
source_f=TimeIntervalGivenFunction(
TimeHarmonicGivenFunction(
make_tdep_given(source_u), omega=10),
0, 1),
dirichlet_tag="boundary",
neumann_tag=TAG_NONE,
radiation_tag=TAG_NONE,
flux_type=flux_type_arg
)
from hedge.tools import join_fields
fields = join_fields(discr.volume_zeros(dtype=dtype),
[discr.volume_zeros(dtype=dtype) for i in range(discr.dimensions)])
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "wiggly.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -----------------------------------------------------------
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=4, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf,
[
("u", fields[0]),
("v", fields[1:]),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 1
assert fields[0].dtype == dtype
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True,
dir_tag=TAG_NONE, neu_tag=TAG_NONE, rad_tag=TAG_ALL,
flux_type_arg="upwind", dtype=np.float64, debug=[]):
from math import sin, cos, pi, exp, sqrt # noqa
from hedge.backends import guess_run_context
rcon = guess_run_context()
dim = 2
if dim == 1:
if rcon.is_head_rank:
from hedge.mesh.generator import make_uniform_1d_mesh
mesh = make_uniform_1d_mesh(-10, 10, 500)
elif dim == 2:
from hedge.mesh.generator import make_rect_mesh
if rcon.is_head_rank:
mesh = make_rect_mesh(a=(-0.5, -0.5), b=(0.5, 0.5), max_area=0.008)
elif dim == 3:
if rcon.is_head_rank:
from hedge.mesh.generator import make_ball_mesh
mesh = make_ball_mesh(max_volume=0.0005)
else:
raise RuntimeError("bad number of dimensions")
if rcon.is_head_rank:
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper(dtype=dtype)
from hedge.models.wave import StrongWaveOperator
from hedge.mesh import TAG_ALL, TAG_NONE # noqa
source_center = np.array([0.1, 0.22])
source_width = 0.05
source_omega = 3
import hedge.optemplate as sym
sym_x = sym.nodes(2)
sym_source_center_dist = sym_x - source_center
op = StrongWaveOperator(-1, dim,
source_f=
sym.CFunction("sin")(source_omega*sym.ScalarParameter("t"))
* sym.CFunction("exp")(
-np.dot(sym_source_center_dist, sym_source_center_dist)
/ source_width**2),
dirichlet_tag=dir_tag,
neumann_tag=neu_tag,
radiation_tag=rad_tag,
flux_type=flux_type_arg
)
discr = rcon.make_discretization(mesh_data, order=4, debug=debug,
default_scalar_type=dtype,
tune_for=op.op_template())
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "fld")
from hedge.tools import join_fields
fields = join_fields(discr.volume_zeros(dtype=dtype),
[discr.volume_zeros(dtype=dtype) for i in range(discr.dimensions)])
# {{{ diagnostics setup
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "wave.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
stepper.add_instrumentation(logmgr)
from hedge.log import LpNorm
u_getter = lambda: fields[0]
logmgr.add_quantity(LpNorm(u_getter, discr, 1, name="l1_u"))
logmgr.add_quantity(LpNorm(u_getter, discr, name="l2_u"))
logmgr.add_watches(["step.max", "t_sim.max", "l2_u", "t_step.max"])
# }}}
# {{{ timestep loop
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=4, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf,
[
("u", discr.convert_volume(fields[0], kind="numpy")),
("v", discr.convert_volume(fields[1:], kind="numpy")),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 1
assert fields[0].dtype == dtype
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=True,
flux_type_arg="upwind",
dtype=np.float64,
debug=[]):
from math import sin, cos, pi, exp, sqrt # noqa
from hedge.backends import guess_run_context
rcon = guess_run_context()
if rcon.is_head_rank:
from hedge.mesh.reader.gmsh import generate_gmsh
mesh = generate_gmsh(GEOMETRY,
2,
allow_internal_boundaries=True,
force_dimension=2)
print "%d elements" % len(mesh.elements)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
discr = rcon.make_discretization(mesh_data,
order=4,
debug=debug,
default_scalar_type=dtype)
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper(dtype=dtype)
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "fld")
source_center = 0
source_width = 0.05
source_omega = 3
import hedge.optemplate as sym
sym_x = sym.nodes(2)
sym_source_center_dist = sym_x - source_center
from hedge.models.wave import StrongWaveOperator
op = StrongWaveOperator(
-1,
discr.dimensions,
source_f=sym.CFunction("sin")(
source_omega * sym.ScalarParameter("t")) * sym.CFunction("exp")(
-np.dot(sym_source_center_dist, sym_source_center_dist) /
source_width**2),
dirichlet_tag="boundary",
neumann_tag=TAG_NONE,
radiation_tag=TAG_NONE,
flux_type=flux_type_arg)
from hedge.tools import join_fields
fields = join_fields(
discr.volume_zeros(dtype=dtype),
[discr.volume_zeros(dtype=dtype) for i in range(discr.dimensions)])
# diagnostics setup -------------------------------------------------------
from pytools.log import LogManager, \
add_general_quantities, \
add_simulation_quantities, \
add_run_info
if write_output:
log_file_name = "wiggly.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -----------------------------------------------------------
rhs = op.bind(discr)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=4,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, [
("u", fields[0]),
("v", fields[1:]),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
assert discr.norm(fields) < 1
assert fields[0].dtype == dtype
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def run_convergence_test_advec(dtype,
flux_type,
random_partition,
mesh_gen,
debug_output=False):
"""Test whether 2/3D advection actually converges"""
from hedge.timestep import RK4TimeStepper
from hedge.tools import EOCRecorder
from math import sin
from hedge.data import TimeDependentGivenFunction
from hedge.visualization import SiloVisualizer
from hedge.backends import guess_run_context
rcon = guess_run_context(["mpi"])
# note: x component must remain zero because x-periodicity is used
v = np.array([0.0, 0.9, 0.3])
def f(x):
return sin(x)
def u_analytic(x, el, t):
return f(
(np.dot(-v[:dims], x) / la.norm(v[:dims]) + t * la.norm(v[:dims])))
def boundary_tagger(vertices, el, face_nr, points):
face_normal = el.face_normals[face_nr]
if np.dot(face_normal, v[:len(face_normal)]) < 0:
return ["inflow"]
else:
return ["outflow"]
mesh = mesh_gen(boundary_tagger)
eoc_rec = EOCRecorder()
if random_partition:
# Distribute elements randomly across nodes.
# This is bad, efficiency-wise, but it puts stress
# on the parallel implementation, which is desired here.
# Another main point of this is to force the code to split
# a periodic face pair across nodes.
from random import choice
partition = [choice(rcon.ranks) for el in mesh.elements]
else:
partition = None
for order in [1, 2, 3, 4]:
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh, partition)
else:
mesh_data = rcon.receive_mesh()
dims = mesh.points.shape[1]
discr = rcon.make_discretization(mesh_data,
order=order,
default_scalar_type=dtype)
op = StrongAdvectionOperator(
v[:dims],
inflow_u=TimeDependentGivenFunction(u_analytic),
flux_type=flux_type)
if debug_output:
vis = SiloVisualizer(discr, rcon)
u = discr.interpolate_volume_function(
lambda x, el: u_analytic(x, el, 0))
ic = u.copy()
if debug_output and rcon.is_head_rank:
print "#elements=%d" % len(mesh.elements)
test_name = "test-%s-o%d-m%s-r%s" % (
flux_type, order, mesh_gen.__name__, random_partition)
rhs = op.bind(discr)
stepper = RK4TimeStepper(dtype=dtype)
from hedge.timestep import times_and_steps
final_time = 1
step_it = times_and_steps(final_time=final_time,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, fields=u))
for step, t, dt in step_it:
u = stepper(u, t, dt, rhs)
assert u.dtype == dtype
u_true = discr.interpolate_volume_function(
lambda x, el: u_analytic(x, el, final_time))
error = u - u_true
l2_error = discr.norm(error)
if debug_output:
visf = vis.make_file(test_name + "-final")
vis.add_data(visf, [("u", u), ("u_true", u_true), ("ic", ic)])
visf.close()
eoc_rec.add_data_point(order, l2_error)
if debug_output and rcon.is_head_rank:
print "%s\n%s\n" % (flux_type.upper(), "-" * len(flux_type))
print eoc_rec.pretty_print(abscissa_label="Poly. Order",
error_label="L2 Error")
assert eoc_rec.estimate_order_of_convergence()[0, 1] > 3
assert eoc_rec.estimate_order_of_convergence(2)[-1, 1] > 7
def main():
from hedge.backends import guess_run_context
rcon = guess_run_context(
#["cuda"]
)
from hedge.tools import EOCRecorder, to_obj_array
eoc_rec = EOCRecorder()
def boundary_tagger(vertices, el, face_nr, all_v):
return ["inflow"]
if rcon.is_head_rank:
from hedge.mesh import make_rect_mesh, \
make_centered_regular_rect_mesh
#mesh = make_rect_mesh((0,0), (10,1), max_area=0.01)
refine = 1
mesh = make_centered_regular_rect_mesh((0,0), (10,1), n=(20,4),
#periodicity=(True, False),
post_refine_factor=refine,
boundary_tagger=boundary_tagger)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3]:
discr = rcon.make_discretization(mesh_data, order=order,
default_scalar_type=numpy.float64)
from hedge.visualization import SiloVisualizer, VtkVisualizer
#vis = VtkVisualizer(discr, rcon, "shearflow-%d" % order)
vis = SiloVisualizer(discr, rcon)
shearflow = SteadyShearFlow()
fields = shearflow.volume_interpolant(0, discr)
gamma, mu, prandtl, spec_gas_const = shearflow.properties()
from hedge.models.gas_dynamics import GasDynamicsOperator
op = GasDynamicsOperator(dimensions=2, gamma=gamma, mu=mu,
prandtl=prandtl, spec_gas_const=spec_gas_const,
bc_inflow=shearflow, bc_outflow=shearflow, bc_noslip=shearflow,
inflow_tag="inflow", outflow_tag="outflow", noslip_tag="noslip")
navierstokes_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = navierstokes_ex(t, q)
max_eigval[0] = speed
return ode_rhs
# needed to get first estimate of maximum eigenvalue
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep import RK4TimeStepper
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
logmgr = LogManager("navierstokes-cpu-%d-%d.dat" % (order, refine),
"w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=0.3,
#max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
if step % 10 == 0:
#if False:
visf = vis.make_file("shearflow-%d-%04d" % (order, step))
#true_fields = shearflow.volume_interpolant(t, discr)
from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(visf,
[
("rho", discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields), kind="numpy")),
#("true_rho", discr.convert_volume(op.rho(true_fields), kind="numpy")),
#("true_e", discr.convert_volume(op.e(true_fields), kind="numpy")),
#("true_rho_u", discr.convert_volume(op.rho_u(true_fields), kind="numpy")),
#("true_u", discr.convert_volume(op.u(true_fields), kind="numpy")),
],
expressions=[
#("diff_rho", "rho-true_rho"),
#("diff_e", "e-true_e"),
#("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
("p", "0.4*(e- 0.5*(rho_u*u))"),
],
time=t, step=step
)
visf.close()
fields = stepper(fields, t, dt, rhs)
true_fields = shearflow.volume_interpolant(t, discr)
l2_error = discr.norm(op.u(fields)-op.u(true_fields))
eoc_rec.add_data_point(order, l2_error)
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
logmgr.set_constant("l2_error", l2_error)
finally:
vis.close()
logmgr.save()
discr.close()
def main(write_output=True):
from pytools import add_python_path_relative_to_script
add_python_path_relative_to_script("..")
from hedge.backends import guess_run_context
rcon = guess_run_context()
from hedge.tools import EOCRecorder
eoc_rec = EOCRecorder()
if rcon.is_head_rank:
from hedge.mesh.generator import \
make_rect_mesh, \
make_centered_regular_rect_mesh
refine = 4
mesh = make_centered_regular_rect_mesh((0,-5), (10,5), n=(9,9),
post_refine_factor=refine)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [3, 4, 5]:
from gas_dynamics_initials import Vortex
flow = Vortex()
from hedge.models.gas_dynamics import (
GasDynamicsOperator, PolytropeEOS, GammaLawEOS)
from hedge.mesh import TAG_ALL
# works equally well for GammaLawEOS
op = GasDynamicsOperator(dimensions=2, mu=flow.mu,
prandtl=flow.prandtl, spec_gas_const=flow.spec_gas_const,
equation_of_state=PolytropeEOS(flow.gamma),
bc_inflow=flow, bc_outflow=flow, bc_noslip=flow,
inflow_tag=TAG_ALL, source=None)
discr = rcon.make_discretization(mesh_data, order=order,
default_scalar_type=numpy.float64,
quad_min_degrees={
"gasdyn_vol": 3*order,
"gasdyn_face": 3*order,
},
tune_for=op.op_template(),
debug=["cuda_no_plan"])
from hedge.visualization import SiloVisualizer, VtkVisualizer
vis = VtkVisualizer(discr, rcon, "vortex-%d" % order)
#vis = SiloVisualizer(discr, rcon)
fields = flow.volume_interpolant(0, discr)
euler_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = euler_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
# limiter ------------------------------------------------------------
from hedge.models.gas_dynamics import SlopeLimiter1NEuler
limiter = SlopeLimiter1NEuler(discr, flow.gamma, 2, op)
from hedge.timestep.runge_kutta import SSP3TimeStepper
#stepper = SSP3TimeStepper(limiter=limiter)
stepper = SSP3TimeStepper(
vector_primitive_factory=discr.get_vector_primitive_factory())
#from hedge.timestep import RK4TimeStepper
#stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = "euler-%d.dat" % order
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
try:
final_time = flow.final_time
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=final_time, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
print "run until t=%g" % final_time
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
#if False:
visf = vis.make_file("vortex-%d-%04d" % (order, step))
#true_fields = vortex.volume_interpolant(t, discr)
from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(visf,
[
("rho", discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields), kind="numpy")),
#("true_rho", discr.convert_volume(op.rho(true_fields), kind="numpy")),
#("true_e", discr.convert_volume(op.e(true_fields), kind="numpy")),
#("true_rho_u", discr.convert_volume(op.rho_u(true_fields), kind="numpy")),
#("true_u", discr.convert_volume(op.u(true_fields), kind="numpy")),
#("rhs_rho", discr.convert_volume(op.rho(rhs_fields), kind="numpy")),
#("rhs_e", discr.convert_volume(op.e(rhs_fields), kind="numpy")),
#("rhs_rho_u", discr.convert_volume(op.rho_u(rhs_fields), kind="numpy")),
],
#expressions=[
#("diff_rho", "rho-true_rho"),
#("diff_e", "e-true_e"),
#("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
#("p", "0.4*(e- 0.5*(rho_u*u))"),
#],
time=t, step=step
)
visf.close()
fields = stepper(fields, t, dt, rhs)
#fields = limiter(fields)
assert not numpy.isnan(numpy.sum(fields[0]))
true_fields = flow.volume_interpolant(final_time, discr)
l2_error = discr.norm(fields-true_fields)
l2_error_rho = discr.norm(op.rho(fields)-op.rho(true_fields))
l2_error_e = discr.norm(op.e(fields)-op.e(true_fields))
l2_error_rhou = discr.norm(op.rho_u(fields)-op.rho_u(true_fields))
l2_error_u = discr.norm(op.u(fields)-op.u(true_fields))
eoc_rec.add_data_point(order, l2_error)
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
logmgr.set_constant("l2_error", l2_error)
logmgr.set_constant("l2_error_rho", l2_error_rho)
logmgr.set_constant("l2_error_e", l2_error_e)
logmgr.set_constant("l2_error_rhou", l2_error_rhou)
logmgr.set_constant("l2_error_u", l2_error_u)
logmgr.set_constant("refinement", refine)
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
# after order loop
assert eoc_rec.estimate_order_of_convergence()[0,1] > 6
def main(write_output=True, allow_features=None):
from hedge.timestep import RK4TimeStepper
from hedge.mesh import make_ball_mesh, make_cylinder_mesh, make_box_mesh
from hedge.visualization import \
VtkVisualizer, \
SiloVisualizer, \
get_rank_partition
from math import sqrt, pi
from hedge.backends import guess_run_context
rcon = guess_run_context(allow_features)
epsilon0 = 8.8541878176e-12 # C**2 / (N m**2)
mu0 = 4 * pi * 1e-7 # N/A**2.
epsilon = 1 * epsilon0
mu = 1 * mu0
dims = 3
if rcon.is_head_rank:
if dims == 2:
from hedge.mesh import make_rect_mesh
mesh = make_rect_mesh(a=(-10.5, -1.5), b=(10.5, 1.5), max_area=0.1)
elif dims == 3:
from hedge.mesh import make_box_mesh
mesh = make_box_mesh(a=(-10.5, -1.5, -1.5),
b=(10.5, 1.5, 1.5),
max_volume=0.1)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
#for order in [1,2,3,4,5,6]:
discr = rcon.make_discretization(mesh_data, order=3)
if write_output:
vis = VtkVisualizer(discr, rcon, "dipole")
from analytic_solutions import DipoleFarField, SphericalFieldAdapter
from hedge.data import ITimeDependentGivenFunction
sph_dipole = DipoleFarField(
q=1, #C
d=1 / 39,
omega=2 * pi * 1e8,
epsilon=epsilon0,
mu=mu0,
)
cart_dipole = SphericalFieldAdapter(sph_dipole)
class PointDipoleSource(ITimeDependentGivenFunction):
def __init__(self):
from pyrticle.tools import CInfinityShapeFunction
sf = CInfinityShapeFunction(0.1 * sph_dipole.wavelength,
discr.dimensions)
self.num_sf = discr.interpolate_volume_function(
lambda x, el: sf(x))
self.vol_0 = discr.volume_zeros()
def volume_interpolant(self, t, discr):
from hedge.tools import make_obj_array
return make_obj_array([
self.vol_0, self.vol_0,
sph_dipole.source_modulation(t) * self.num_sf
])
from hedge.mesh import TAG_ALL, TAG_NONE
if dims == 2:
from hedge.models.em import TMMaxwellOperator as MaxwellOperator
else:
from hedge.models.em import MaxwellOperator
op = MaxwellOperator(
epsilon,
mu,
flux_type=1,
pec_tag=TAG_NONE,
absorb_tag=TAG_ALL,
current=PointDipoleSource(),
)
fields = op.assemble_eh(discr=discr)
if rcon.is_head_rank:
print "#elements=", len(mesh.elements)
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = "dipole.dat"
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
from hedge.log import EMFieldGetter, add_em_quantities
field_getter = EMFieldGetter(discr, op, lambda: fields)
add_em_quantities(logmgr, op, field_getter)
from pytools.log import PushLogQuantity
relerr_e_q = PushLogQuantity("relerr_e", "1",
"Relative error in masked E-field")
relerr_h_q = PushLogQuantity("relerr_h", "1",
"Relative error in masked H-field")
logmgr.add_quantity(relerr_e_q)
logmgr.add_quantity(relerr_h_q)
logmgr.add_watches([
"step.max", "t_sim.max", ("W_field", "W_el+W_mag"), "t_step.max",
"relerr_e", "relerr_h"
])
if write_output:
point_timeseries = [(open("b-x%d-vs-time.dat" % i,
"w"), open("b-x%d-vs-time-true.dat" % i,
"w"),
discr.get_point_evaluator(
numpy.array([i, 0, 0][:dims],
dtype=discr.default_scalar_type)))
for i in range(1, 5)]
# timestep loop -------------------------------------------------------
mask = discr.interpolate_volume_function(sph_dipole.far_field_mask)
def apply_mask(field):
from hedge.tools import log_shape
ls = log_shape(field)
result = discr.volume_empty(ls)
from pytools import indices_in_shape
for i in indices_in_shape(ls):
result[i] = mask * field[i]
return result
rhs = op.bind(discr)
t = 0
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=1e-8,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if write_output and step % 10 == 0:
sub_timer = vis_timer.start_sub_timer()
e, h = op.split_eh(fields)
sph_dipole.set_time(t)
true_e, true_h = op.split_eh(
discr.interpolate_volume_function(cart_dipole))
visf = vis.make_file("dipole-%04d" % step)
mask_e = apply_mask(e)
mask_h = apply_mask(h)
mask_true_e = apply_mask(true_e)
mask_true_h = apply_mask(true_h)
from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(visf, [("e", e), ("h", h), ("true_e", true_e),
("true_h", true_h), ("mask_e", mask_e),
("mask_h", mask_h),
("mask_true_e", mask_true_e),
("mask_true_h", mask_true_h)],
time=t,
step=step)
visf.close()
sub_timer.stop().submit()
from hedge.tools import relative_error
relerr_e_q.push_value(
relative_error(discr.norm(mask_e - mask_true_e),
discr.norm(mask_true_e)))
relerr_h_q.push_value(
relative_error(discr.norm(mask_h - mask_true_h),
discr.norm(mask_true_h)))
if write_output:
for outf_num, outf_true, evaluator in point_timeseries:
for outf, ev_h in zip([outf_num, outf_true],
[h, true_h]):
outf.write("%g\t%g\n" %
(t, op.mu * evaluator(ev_h[1])))
outf.flush()
fields = stepper(fields, t, dt, rhs)
finally:
if write_output:
vis.close()
logmgr.save()
discr.close()
def main(write_output=True):
from hedge.timestep.runge_kutta import LSRK4TimeStepper
from math import sqrt, pi, exp
from hedge.backends import guess_run_context
rcon = guess_run_context()
epsilon0 = 8.8541878176e-12 # C**2 / (N m**2)
mu0 = 4 * pi * 1e-7 # N/A**2.
epsilon = 1 * epsilon0
mu = 1 * mu0
c = 1 / sqrt(mu * epsilon)
pml_width = 0.5
#mesh = make_mesh(a=np.array((-1,-1,-1)), b=np.array((1,1,1)),
#mesh = make_mesh(a=np.array((-3,-3)), b=np.array((3,3)),
mesh = make_mesh(
a=np.array((-1, -1)),
b=np.array((1, 1)),
#mesh = make_mesh(a=np.array((-2,-2)), b=np.array((2,2)),
pml_width=pml_width,
max_volume=0.01)
if rcon.is_head_rank:
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
class Current:
def volume_interpolant(self, t, discr):
from hedge.tools import make_obj_array
result = discr.volume_zeros(kind="numpy", dtype=np.float64)
omega = 6 * c
if omega * t > 2 * pi:
return make_obj_array([result, result, result])
x = make_obj_array(discr.nodes.T)
r = np.sqrt(np.dot(x, x))
idx = r < 0.3
result[idx] = (1+np.cos(pi*r/0.3))[idx] \
*np.sin(omega*t)**3
result = discr.convert_volume(result,
kind=discr.compute_kind,
dtype=discr.default_scalar_type)
return make_obj_array([-result, result, result])
order = 3
discr = rcon.make_discretization(mesh_data,
order=order,
debug=["cuda_no_plan"])
from hedge.visualization import VtkVisualizer
if write_output:
vis = VtkVisualizer(discr, rcon, "em-%d" % order)
from hedge.mesh import TAG_ALL, TAG_NONE
from hedge.data import GivenFunction, TimeHarmonicGivenFunction, TimeIntervalGivenFunction
from hedge.models.em import MaxwellOperator
from hedge.models.pml import \
AbarbanelGottliebPMLMaxwellOperator, \
AbarbanelGottliebPMLTMMaxwellOperator, \
AbarbanelGottliebPMLTEMaxwellOperator
op = AbarbanelGottliebPMLTEMaxwellOperator(epsilon,
mu,
flux_type=1,
current=Current(),
pec_tag=TAG_ALL,
absorb_tag=TAG_NONE,
add_decay=True)
fields = op.assemble_ehpq(discr=discr)
stepper = LSRK4TimeStepper()
if rcon.is_head_rank:
print "order %d" % order
print "#elements=", len(mesh.elements)
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = "maxwell-%d.dat" % order
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
from hedge.log import EMFieldGetter, add_em_quantities
field_getter = EMFieldGetter(discr, op, lambda: fields)
add_em_quantities(logmgr, op, field_getter)
logmgr.add_watches(
["step.max", "t_sim.max", ("W_field", "W_el+W_mag"), "t_step.max"])
from hedge.log import LpNorm
class FieldIdxGetter:
def __init__(self, whole_getter, idx):
self.whole_getter = whole_getter
self.idx = idx
def __call__(self):
return self.whole_getter()[self.idx]
# timestep loop -------------------------------------------------------
t = 0
pml_coeff = op.coefficients_from_width(discr, width=pml_width)
rhs = op.bind(discr, pml_coeff)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=4 / c,
logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(
discr, stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
e, h, p, q = op.split_ehpq(fields)
visf = vis.make_file("em-%d-%04d" % (order, step))
#pml_rhs_e, pml_rhs_h, pml_rhs_p, pml_rhs_q = \
#op.split_ehpq(rhs(t, fields))
j = Current().volume_interpolant(t, discr)
vis.add_data(
visf,
[
("e", discr.convert_volume(e, "numpy")),
("h", discr.convert_volume(h, "numpy")),
("p", discr.convert_volume(p, "numpy")),
("q", discr.convert_volume(q, "numpy")),
("j", discr.convert_volume(j, "numpy")),
#("pml_rhs_e", pml_rhs_e),
#("pml_rhs_h", pml_rhs_h),
#("pml_rhs_p", pml_rhs_p),
#("pml_rhs_q", pml_rhs_q),
#("max_rhs_e", max_rhs_e),
#("max_rhs_h", max_rhs_h),
#("max_rhs_p", max_rhs_p),
#("max_rhs_q", max_rhs_q),
],
time=t,
step=step)
visf.close()
fields = stepper(fields, t, dt, rhs)
_, _, energies_data = logmgr.get_expr_dataset("W_el+W_mag")
energies = [value for tick_nbr, value in energies_data]
assert energies[-1] < max(energies) * 1e-2
finally:
logmgr.close()
if write_output:
vis.close()
def main(write_output=True, allow_features=None, flux_type_arg=1,
bdry_flux_type_arg=None, extra_discr_args={}):
from math import sqrt, pi
from hedge.models.em import TEMaxwellOperator
from hedge.backends import guess_run_context
rcon = guess_run_context(allow_features)
epsilon0 = 8.8541878176e-12 # C**2 / (N m**2)
mu0 = 4*pi*1e-7 # N/A**2.
c = 1/sqrt(mu0*epsilon0)
materials = {"vacuum" : (epsilon0, mu0),
"dielectric" : (2*epsilon0, mu0)}
output_dir = "2d_cavity"
import os
if not os.access(output_dir, os.F_OK):
os.makedirs(output_dir)
# should no tag raise an error or default to free space?
def eps_val(x, el):
for key in materials.keys():
if el in material_elements[key]:
return materials[key][0]
raise ValueError, "Element does not belong to any material"
def mu_val(x, el):
for key in materials.keys():
if el in material_elements[key]:
return materials[key][1]
raise ValueError, "Element does not belong to any material"
# geometry of cavity
d = 100e-3
a = 150e-3
# analytical frequency and transverse wavenumbers of resonance
f0 = 9.0335649907522321e8
h = 2*pi*f0/c
l = -h*sqrt(2)
# substitute the following and change materials for a homogeneous cavity
#h = pi/a
#l =-h
def initial_val(discr):
# the initial solution for the TE_10-like mode
def initial_Hz(x, el):
from math import cos, sin
if el in material_elements["vacuum"]:
return h*cos(h*x[0])
else:
return -l*sin(h*d)/sin(l*(a-d))*cos(l*(a-x[0]))
from hedge.tools import make_obj_array
result_zero = discr.volume_zeros(kind="numpy", dtype=numpy.float64)
H_z = make_tdep_given(initial_Hz).volume_interpolant(0, discr)
return make_obj_array([result_zero, result_zero, H_z])
if rcon.is_head_rank:
from hedge.mesh.reader.gmsh import generate_gmsh
mesh = generate_gmsh(CAVITY_GEOMETRY, 2, force_dimension=2)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
# Work out which elements belong to each material
material_elements = {}
for key in materials.keys():
material_elements[key] = set(mesh_data.tag_to_elements[key])
order = 3
#extra_discr_args.setdefault("debug", []).append("cuda_no_plan")
#extra_discr_args.setdefault("debug", []).append("dump_optemplate_stages")
from hedge.data import make_tdep_given
from hedge.mesh import TAG_ALL
op = TEMaxwellOperator(epsilon=make_tdep_given(eps_val), mu=make_tdep_given(mu_val), \
flux_type=flux_type_arg, \
bdry_flux_type=bdry_flux_type_arg, dimensions=2, pec_tag=TAG_ALL)
# op = TEMaxwellOperator(epsilon=epsilon0, mu=mu0,
# flux_type=flux_type_arg, \
# bdry_flux_type=bdry_flux_type_arg, dimensions=2, pec_tag=TAG_ALL)
discr = rcon.make_discretization(mesh_data, order=order,
tune_for=op.op_template(),
**extra_discr_args)
# create the initial solution
fields = initial_val(discr)
from hedge.visualization import VtkVisualizer
if write_output:
from os.path import join
vis = VtkVisualizer(discr, rcon, join(output_dir, "cav-%d" % order))
# monitor the solution at a point to find the resonant frequency
try:
point_getter = discr.get_point_evaluator(numpy.array([75e-3, 25e-3, 0])) #[0.25, 0.25, 0.25]))
except RuntimeError:
point_getter = None
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
from hedge.timestep.runge_kutta import LSRK4TimeStepper
stepper = LSRK4TimeStepper(dtype=discr.default_scalar_type, rcon=rcon)
#from hedge.timestep.dumka3 import Dumka3TimeStepper
#stepper = Dumka3TimeStepper(3, dtype=discr.default_scalar_type, rcon=rcon)
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
from os.path import join
log_file_name = join(output_dir, "cavity-%d.dat" % order)
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
from pytools.log import IntervalTimer
vis_timer = IntervalTimer("t_vis", "Time spent visualizing")
logmgr.add_quantity(vis_timer)
#from hedge.log import EMFieldGetter, add_em_quantities
#field_getter = EMFieldGetter(discr, op, lambda: fields)
#add_em_quantities(logmgr, op, field_getter)
logmgr.add_watches(
["step.max", "t_sim.max",
#("W_field", "W_el+W_mag"),
"t_step.max"]
)
# timestep loop -------------------------------------------------------
rhs = op.bind(discr)
final_time = 10e-9
if point_getter is not None:
from os.path import join
pointfile = open(join(output_dir, "point.txt"), "wt")
done_dt = False
try:
from hedge.timestep import times_and_steps
from os.path import join
step_it = times_and_steps(
final_time=final_time, logmgr=logmgr,
max_dt_getter=lambda t: op.estimate_timestep(discr,
stepper=stepper, t=t, fields=fields))
for step, t, dt in step_it:
if step % 10 == 0 and write_output:
sub_timer = vis_timer.start_sub_timer()
e, h = op.split_eh(fields)
visf = vis.make_file(join(output_dir, "cav-%d-%04d") % (order, step))
vis.add_data(visf,
[
("e",
discr.convert_volume(e, kind="numpy")),
("h",
discr.convert_volume(h, kind="numpy")),],
time=t, step=step
)
visf.close()
sub_timer.stop().submit()
fields = stepper(fields, t, dt, rhs)
if point_getter is not None:
val = point_getter(fields)
#print val
if not done_dt:
pointfile.write("#%g\n" % dt)
done_dt = True
pointfile.write("%g\n" %val[0])
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
if point_getter is not None:
pointfile.close()
def main(write_output=True):
from hedge.backends import guess_run_context
rcon = guess_run_context(
#["cuda"]
)
gamma = 1.4
# at A=1 we have case of isentropic vortex, source terms
# arise for other values
densityA = 2.0
from hedge.tools import EOCRecorder, to_obj_array
eoc_rec = EOCRecorder()
if rcon.is_head_rank:
from hedge.mesh import \
make_rect_mesh, \
make_centered_regular_rect_mesh
refine = 1
mesh = make_centered_regular_rect_mesh((0,-5), (10,5), n=(9,9),
post_refine_factor=refine)
mesh_data = rcon.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
for order in [4,5]:
discr = rcon.make_discretization(mesh_data, order=order,
debug=[#"cuda_no_plan",
#"print_op_code"
],
default_scalar_type=numpy.float64)
from hedge.visualization import SiloVisualizer, VtkVisualizer
#vis = VtkVisualizer(discr, rcon, "vortex-%d" % order)
vis = SiloVisualizer(discr, rcon)
vortex = Vortex(beta=5, gamma=gamma,
center=[5,0],
velocity=[1,0], densityA=densityA)
fields = vortex.volume_interpolant(0, discr)
sources=SourceTerms(beta=5, gamma=gamma,
center=[5,0],
velocity=[1,0], densityA=densityA)
from hedge.models.gas_dynamics import (
GasDynamicsOperator, GammaLawEOS)
from hedge.mesh import TAG_ALL
op = GasDynamicsOperator(dimensions=2,
mu=0.0, prandtl=0.72, spec_gas_const=287.1,
equation_of_state=GammaLawEOS(vortex.gamma),
bc_inflow=vortex, bc_outflow=vortex, bc_noslip=vortex,
inflow_tag=TAG_ALL, source=sources)
euler_ex = op.bind(discr)
max_eigval = [0]
def rhs(t, q):
ode_rhs, speed = euler_ex(t, q)
max_eigval[0] = speed
return ode_rhs
rhs(0, fields)
if rcon.is_head_rank:
print "---------------------------------------------"
print "order %d" % order
print "---------------------------------------------"
print "#elements=", len(mesh.elements)
# limiter setup -------------------------------------------------------
from hedge.models.gas_dynamics import SlopeLimiter1NEuler
limiter = SlopeLimiter1NEuler(discr, gamma, 2, op)
# time stepper --------------------------------------------------------
from hedge.timestep import SSPRK3TimeStepper, RK4TimeStepper
#stepper = SSPRK3TimeStepper(limiter=limiter)
#stepper = SSPRK3TimeStepper()
stepper = RK4TimeStepper()
# diagnostics setup ---------------------------------------------------
from pytools.log import LogManager, add_general_quantities, \
add_simulation_quantities, add_run_info
if write_output:
log_file_name = "euler-%d.dat" % order
else:
log_file_name = None
logmgr = LogManager(log_file_name, "w", rcon.communicator)
add_run_info(logmgr)
add_general_quantities(logmgr)
add_simulation_quantities(logmgr)
discr.add_instrumentation(logmgr)
stepper.add_instrumentation(logmgr)
logmgr.add_watches(["step.max", "t_sim.max", "t_step.max"])
# timestep loop -------------------------------------------------------
t = 0
#fields = limiter(fields)
try:
from hedge.timestep import times_and_steps
step_it = times_and_steps(
final_time=.1,
#max_steps=500,
logmgr=logmgr,
max_dt_getter=lambda t: 0.4*op.estimate_timestep(discr,
stepper=stepper, t=t, max_eigenvalue=max_eigval[0]))
for step, t, dt in step_it:
if step % 1 == 0 and write_output:
#if False:
visf = vis.make_file("vortex-%d-%04d" % (order, step))
true_fields = vortex.volume_interpolant(t, discr)
#rhs_fields = rhs(t, fields)
from pyvisfile.silo import DB_VARTYPE_VECTOR
vis.add_data(visf,
[
("rho", discr.convert_volume(op.rho(fields), kind="numpy")),
("e", discr.convert_volume(op.e(fields), kind="numpy")),
("rho_u", discr.convert_volume(op.rho_u(fields), kind="numpy")),
("u", discr.convert_volume(op.u(fields), kind="numpy")),
#("true_rho", discr.convert_volume(op.rho(true_fields), kind="numpy")),
#("true_e", discr.convert_volume(op.e(true_fields), kind="numpy")),
#("true_rho_u", discr.convert_volume(op.rho_u(true_fields), kind="numpy")),
#("true_u", discr.convert_volume(op.u(true_fields), kind="numpy")),
#("rhs_rho", discr.convert_volume(op.rho(rhs_fields), kind="numpy")),
#("rhs_e", discr.convert_volume(op.e(rhs_fields), kind="numpy")),
#("rhs_rho_u", discr.convert_volume(op.rho_u(rhs_fields), kind="numpy")),
],
expressions=[
#("diff_rho", "rho-true_rho"),
#("diff_e", "e-true_e"),
#("diff_rho_u", "rho_u-true_rho_u", DB_VARTYPE_VECTOR),
("p", "0.4*(e- 0.5*(rho_u*u))"),
],
time=t, step=step
)
visf.close()
fields = stepper(fields, t, dt, rhs)
true_fields = vortex.volume_interpolant(t, discr)
l2_error = discr.norm(fields-true_fields)
l2_error_rho = discr.norm(op.rho(fields)-op.rho(true_fields))
l2_error_e = discr.norm(op.e(fields)-op.e(true_fields))
l2_error_rhou = discr.norm(op.rho_u(fields)-op.rho_u(true_fields))
l2_error_u = discr.norm(op.u(fields)-op.u(true_fields))
eoc_rec.add_data_point(order, l2_error_rho)
print
print eoc_rec.pretty_print("P.Deg.", "L2 Error")
logmgr.set_constant("l2_error", l2_error)
logmgr.set_constant("l2_error_rho", l2_error_rho)
logmgr.set_constant("l2_error_e", l2_error_e)
logmgr.set_constant("l2_error_rhou", l2_error_rhou)
logmgr.set_constant("l2_error_u", l2_error_u)
logmgr.set_constant("refinement", refine)
finally:
if write_output:
vis.close()
logmgr.close()
discr.close()
def main(write_output=['vtu', 'receivers'],
allow_features='',
dim=2,
order=4,
stfree_tag=TAG_NONE,
fix_tag=TAG_ALL,
op_tag=TAG_NONE,
flux_type="lf",
max_steps=None,
output_dir='output',
pml=None,
sources=None,
source_param={},
final_time=12,
quiet_output=True,
nonlinearity_type=None,
mesh_file='',
periodicity=None,
material_files=None,
vtu_every=20):
"""
Parameters:
@param write_output: output data, among 'vtu', 'receivers' and 'txt'
@param allow_features: 'mpi' or 'cuda'
@param dim: 1, 2 or 3
@param order: the order of the method
@param stfree_tag: which elements to mark as stress-free boundaries
@param fix_tag: which elements to mark as fixed boundaries
@param op_tag: which elements to mark as open boundaries
@param flux_type: 'lf' (Lax-Freidrich flux) or 'central'
@param max_steps: None (no limit) or maximum number of steps to compute
@param output_dir: directory where to write the output
@param pml: None or NPML widths in this order: [x_l, y_l, z_l, x_r, y_r, z_r]
@param sources: an array containing the coordinates of the source or None
@param source_param: a dict containing the parameters for the source functions
@param final_time: number of seconds of simulations to compute
@param quiet_output: if True, only the main thread will print information
@param nonlinearity_type: None (linear) or 'classical' (non-linear)
@param mesh_file: the file to use as a mesh, or '' in 1D
@param periodicity: the names of the boundaries to stick together, or None
@param material_files: array, the material files (.dat) to use
@param vtu_every: n, to write a vtu file every n steps
"""
rcon = guess_run_context(allow_features)
rcon_init = guess_run_context(allow_features)
debug = ['dump_optemplate_stages']
dtype = numpy.float64
if 'cuda' in allow_features:
dtype = numpy.float32
debug.append('cuda_no_plan')
if rcon.is_head_rank and output_dir and not access(output_dir, F_OK):
makedirs(output_dir)
if quiet_output:
print_output = rcon.is_head_rank
else:
print_output = True
if print_output:
print "Using features:", ', '.join(allow_features).upper()
nbranks = len(rcon.ranks)
print "Using", nbranks, "rank" + ('s' if nbranks > 1 else '')
print "Using", dim, "dimension" + ('s' if dim > 1 else '')
print "Rank", rcon.rank, "will print its output."
else:
print "Rank", rcon.rank, "will be silent."
class Receiver():
pass
assert dim in [1, 2, 3], 'Bad number of dimensions'
# Define mesh ---
mesh = None
if mesh_file != '':
mesh = read_gmsh(mesh_file,
force_dimension=dim,
periodicity=periodicity,
allow_internal_boundaries=False,
tag_mapper=lambda tag: tag)
elif dim == 1:
from hedge.mesh.generator import make_uniform_1d_mesh
mesh = make_uniform_1d_mesh(-10, 10, 500)
else:
raise Exception('Error: No mesh file specified!')
if rcon.is_head_rank:
print "Using %d elements and order %d" % (len(mesh.elements), order)
mesh_data = rcon.distribute_mesh(mesh)
mesh_init = rcon_init.distribute_mesh(mesh)
else:
mesh_data = rcon.receive_mesh()
mesh_init = rcon_init.receive_mesh()
if mesh_file:
from libraries.gmsh_reader import GmshReader
gmsh = GmshReader(mesh_file, dim, print_output)
# End of mesh definition ---
# Define sources ---
source = None
if sources is not None:
#FIXME: "Multiple source points are currently unsupported"
source = sources
if print_output:
print "Using specified source", source
else:
if print_output:
print "No source specified",
if mesh_file:
if print_output:
print "trying to find one in", mesh_file
sources = gmsh.pointSources
if sources != []:
source = sources[0]
if print_output:
print "Using source", source, "from", mesh_file
else:
if print_output:
print "Error: no source!"
else:
if print_output:
print "and no mesh file!"
raise Exception('Error: Could not find any source!')
def source_v_x(pos, el):
pos = pos - source
#return exp(-numpy.dot(pos, pos) / source_param['sigma'] ** 2)
return exp(- pos[0]**2 / source_param['sigma'] ** 2)
def source_v_y(pos, el):
pos = pos - source
return 0
def source_v_z(pos, el):
pos = pos - source
return 0
source_type = None
if source_param['type'] == 'Sinus':
from libraries.functions import SinusGivenFunction
source_type = 'SinusGivenFunction'
elif source_param['type'] == 'SineBurst':
from libraries.functions import SineBurstGivenFunction
source_type = 'SineBurstGivenFunction'
elif source_param['type'] == 'Modulated_sinus':
from libraries.functions import ModulatedSinusGivenFunction
source_type = 'ModulatedSinusGivenFunction'
elif source_param['type'] == 'Ricker':
from libraries.functions import TimeRickerWaveletGivenFunction
source_type = 'TimeRickerWaveletGivenFunction'
assert source_type is not None, "Failed to define source function!"
source_function = locals()[source_type]
print "Using source type:", source_type
from hedge.data import make_tdep_given, TimeIntervalGivenFunction
def source_i(source_v_i):
return TimeIntervalGivenFunction(
source_function(make_tdep_given(source_v_i),
source_param['fc'], source_param['td']),
source_param['begin'], source_param['end'])
sources = {'source_x': source_i(source_v_x),
'source_y': source_i(source_v_y),
'source_z': source_i(source_v_z)}
# End of sources definition ---
# Define materials and link them with elements ---
materials = []
constants = ['Density', 'LinearElasticConstants']
if nonlinearity_type == 'cubic':
constants.append('ElasticConstant_lambda')
constants.append('ElasticConstant_mu')
constants.append('QuadraticElasticConstant_f')
constants.append('CubicElasticConstant_h')
elif nonlinearity_type is not None:
constants.append('NonlinearElasticConstants')
for material_file in material_files:
material = Material(material_file, constants, dtype, print_output)
if nonlinearity_type == 'cubic':
assert material.lambda_ is not None, "Error: Missing elastic constant lambda in " + file
assert material.mu is not None, "Error: Missing elastic constant mu in " + file
assert material.f is not None, "Error: Missing quadratic constant f in " + file
assert material.h is not None, "Error: Missing cubic constant h in " + file
elif nonlinearity_type is not None:
# In the nonlinear mode, materials MUST have a nonlinear constants
assert material.Cnl is not None, "Error: Missing nonlinear constants in " + file
materials.append(material)
assert len(materials) > 0, "Error: You must define at least 1 material."
# Work out which elements belong to each material
material_elements = []
used_materials = []
speeds = []
for num, name in [(0, 'mat1'), (1, 'mat2'), (2, 'mat3')]:
if len(materials) > num:
if name in mesh_init.tag_to_elements.keys():
elements_list = [el.id for el in mesh_init.tag_to_elements[name]]
material_elements.append(elements_list)
else:
num = 0
speed = (materials[num].C[0, 0] / materials[num].rho) ** 0.5
speeds.append(speed.astype(dtype))
used_materials.append(materials[num])
if print_output:
print "Using", materials[num].filename, "as", name
speed = max(speeds)
if print_output:
print "Using max speed:", speed, "m/s"
def mat_val(x, el):
# Will be used in Evaluate(mat, val)
for i in range(len(material_elements)):
if el.id in material_elements[i]:
return i
return 0
# End of materials definition ---
# Define the elastodynamics operator and the discretization ---
kwargs = {
'dimensions': dim,
'speed': speed,
'material': make_tdep_given(mat_val),
'sources': sources,
'boundaryconditions_tag': \
{'stressfree': stfree_tag,
'fixed': fix_tag,
'open': op_tag},
'materials': used_materials,
'flux_type': flux_type
}
operator = None
if nonlinearity_type == 'cubic':
kwargs['nonlinearity_type'] = nonlinearity_type
if pml:
from elastodynamic import CubicNPMLElastoDynamicsOperator
operator = 'CubicNPMLElastoDynamicsOperator'
else:
raise NotImplementedError
elif nonlinearity_type is not None:
kwargs['nonlinearity_type'] = nonlinearity_type
if pml:
from elastodynamic import QuadraticNPMLElastoDynamicsOperator
operator = 'QuadraticNPMLElastoDynamicsOperator'
else:
from elastodynamic import QuadraticElastoDynamicsOperator
operator = 'QuadraticElastoDynamicsOperator'
else:
if pml:
from elastodynamic import NPMLElastoDynamicsOperator
operator = "NPMLElastoDynamicsOperator"
else:
from elastodynamic import ElastoDynamicsOperator
operator = "ElastoDynamicsOperator"
assert operator is not None, "Failed to define operator!"
op = locals()[operator](**kwargs)
if print_output:
print "Using", operator
discr = rcon.make_discretization(mesh_data, order=order, debug=debug, tune_for=op.op_template())
# End of elastodynamics operator and discretization definition ---
# Define receivers ---
receivers = []
point_receivers = []
if write_output and print_output:
print "Using output dir:", output_dir
if "receivers" in write_output:
i = 0
if mesh_file:
receivers = gmsh.pointReceivers
if receivers != []:
for receiver in receivers:
try:
point_receiver = Receiver()
point_receiver.evaluator = discr.get_point_evaluator(numpy.array(receiver))
point_receiver.done_dt = False
point_receiver.id = i
point_receiver.coordinates = receiver
point_receiver.filename = "receiver_%s.txt" % repr(point_receiver.coordinates)
except:
if not quiet_output:
print "Receiver ignored (point not found):", receiver
else:
point_receivers.append(point_receiver)
i += 1
print "Using", point_receiver.filename, "for receiver", receiver
# End of receivers definition ---
# Define visualization ---
def write_datafile(filename, variables):
if rcon is not None and len(rcon.ranks) > 1:
filename += "-%04d" % rcon.rank
visfile = open(filename + ".txt", "wt")
visfile.write("x\ty\t")
for name, field in variables:
if name == "m":
visfile.write("m\t")
else:
i = 0
for subvect in field:
i += 1
assert len(subvect) == len(discr.nodes), "Wrong length!"
visfile.write(name + "_" + format(i) + "\t")
visfile.write("\n")
for i in range(len(discr.nodes)):
for coord in discr.nodes[i]:
visfile.write(format(coord) + "\t")
for name, field in variables:
if name == "m":
visfile.write(format(field[i]) + "\t")
else:
for subvect in field:
visfile.write(format(subvect[i]) + "\t")
visfile.write("\n")
visfile.close()
if 'vtu' in write_output:
from hedge.visualization import VtkVisualizer
vis = VtkVisualizer(discr, rcon, 'fld')
if output_dir:
chdir(output_dir)
if 'receivers' in write_output:
for point_receiver in point_receivers:
point_receiver.pointfile = open(point_receiver.filename, "wt")
#sumfile = open("receiver_%s_sum.txt" % rcon.rank, "wt")
# End of visualization definition ---
# Bind the operator to the discretization ---
if pml:
coefficients = op.coefficients_from_width(discr, mesh, widths=pml,
material=materials[0],
alpha_magnitude=2 * pi * source_param['fc'] / 10)
rhs = op.bind(discr, coefficients)
else:
rhs = op.bind(discr)
# End of operator binding ---
# Define the timestep loop ---
t = 0.0
max_txt = ''
try:
len_fields = op.len_q
if pml:
len_fields += op.len_f2
fields = make_obj_array([discr.volume_zeros(dtype=dtype) for _ in range(len_fields)])
vector_primitive_factory = None if 'cuda' in allow_features else discr.get_vector_primitive_factory()
from hedge.timestep import times_and_steps, LSRK4TimeStepper
stepper = LSRK4TimeStepper(vector_primitive_factory=vector_primitive_factory, dtype=dtype)
max_dt_getter = lambda t: op.estimate_timestep(discr, stepper=stepper, t=t, fields=fields)
step_it = times_and_steps(final_time=final_time, logmgr=None, max_dt_getter=max_dt_getter)
for step, t, dt in step_it:
if max_steps > 0:
max_txt = ' on %d' % max_steps
if step > max_steps:
break
if step % vtu_every == 0:
variables = [("m", discr.convert_volume(op.m(fields), "numpy")),
("v", discr.convert_volume(op.v(fields), "numpy")),
("F", discr.convert_volume(op.F(fields), "numpy"))]
if print_output:
print time.strftime('[%H:%M:%S] ', time.localtime()) + \
'Step: ' + format(step) + max_txt + '; time: ' + format(t)
if 'vtu' in write_output:
visf = vis.make_file("fld-%04d" % step)
vis.add_data(visf, variables, time=t, step=step)
visf.close()
if 'txt' in write_output:
write_datafile("fld-%04d" % step, variables)
if 'receivers' in write_output and point_receivers != []:
variables = discr.convert_volume(fields, "numpy")
#sum_val = numpy.zeros(len(fields))
#sumfile.write("\n%s " % format(t))
for point_receiver in point_receivers:
val = point_receiver.evaluator(variables)
if not point_receiver.done_dt:
point_receiver.pointfile.write("# dt: %g s\n" % dt)
point_receiver.pointfile.write("# m: 1 field\n")
point_receiver.pointfile.write("# v: %d fields\n" % dim)
point_receiver.pointfile.write("# F: %d fields\n" % op.len_f)
point_receiver.pointfile.write("# Coordinates: %s\n# t m " % repr(point_receiver.coordinates))
for i in range(dim):
point_receiver.pointfile.write('v%s ' % i)
for i in range(op.len_f):
point_receiver.pointfile.write("F%s " % i)
point_receiver.done_dt = True
point_receiver.pointfile.write("\n%s " % format(t))
for i in range(1 + dim + op.len_f):
#sum_val[i] += val[i]
point_receiver.pointfile.write("%s " % format(val[i]))
#for i in range(len(val)):
#sumfile.write("%s " % format(sum_val[i]))
fields = stepper(fields, t, dt, rhs)
finally:
if 'vtu' in write_output:
vis.close()
if 'receivers' in write_output:
for point_receiver in point_receivers:
point_receiver.pointfile.close()
#sumfile.close()
discr.close()
if output_dir:
chdir('..')