def plotting(fig_fil):
pass
for condition, dir in dirs.iteritems():
h5_filename = dir + 'storage.h5'
neuronvisio.manager = reload(neuronvisio.manager)
name = 'ele_bio_' + condition + "_" + 'spine1478' + '.png'
if not os.path.exists(os.path.join(dir, name)):
man = neuronvisio.manager.Manager()
man.load_from_hdf(h5_filename)
dp = DoublePlotter()
sp = StimulPlotter()
for spine_num in stimulated_spines:
name = None
fig_filename = None
name = 'ele_bio_' + condition + "_" + spine_num + '.png'
fig_filename = os.path.join(dir, name)
if not os.path.exists(fig_filename):
biogroup = 'timeSeries_' + spine_num
fig = plt.figure()
ax1, ax2 = dp.plot_double_axes(man, spine_num, 'v',
'AMPAR_P', bio_group=biogroup)
ax1.set_ylim(-90, 0)
def plotting(fig_fil):
pass
for condition, dir in dirs.iteritems():
h5_filename = dir + 'storage.h5'
neuronvisio.manager = reload(neuronvisio.manager)
prefix = 'calcium_'
name = prefix + condition + "_" + 'spine1478' + '.png'
REWRITE = True
if not os.path.exists(os.path.join(dir, name)):
man = neuronvisio.manager.Manager()
man.load_from_hdf(h5_filename)
#dp = DoublePlotter()
sp = StimulPlotter()
for spine_num in stimulated_spines:
name = None
fig_filename = None
name = prefix + condition + "_" + spine_num + '.png'
fig_filename = os.path.join(dir, name)
if not os.path.exists(fig_filename):
biogroup = 'timeSeries_' + spine_num
fig = plt.figure()
sec_name = "%s_head" %spine_num
t = man.groups['t']
cali = man.get_vector(sec_name, 'cali')
cai = man.get_vector(sec_name, 'cai')
