Python main示例

示例#1

文件： test_hicPlotAverageRegions.py 项目： simonbray/HiCExplorer

def test_average_regions_plot_log():

    outfile = NamedTemporaryFile(suffix='.png', prefix='average_region_log', delete=False)
    matrix = ROOT + 'hicAverageRegions/result_range_100000.npz'
    args = "--matrix {} -o {} --log --colorMap RdYlBu_r".format(matrix, outfile.name).split()
    hicPlotAverageRegions.main(args)

    res = compare_images(ROOT + '/hicPlotAverageRegions/defaults_log.png', outfile.name, tol=50)
    assert res is None, res
    os.remove(outfile.name)

示例#2

文件： test_hicPlotAverageRegions.py 项目： simonbray/HiCExplorer

def test_average_regions_plot_log_vmin_vmax_colormap():

    outfile = NamedTemporaryFile(suffix='.png', prefix='average_region_log1p', delete=False)
    matrix = ROOT + 'hicAverageRegions/result_range_100000.npz'
    args = "--matrix {} -o {} --vMax 20 --vMin 10 --colorMap plasma".format(matrix, outfile.name).split()
    hicPlotAverageRegions.main(args)

    res = compare_images(ROOT + '/hicPlotAverageRegions/defaults_log_vmin_vmax.png', outfile.name, tol=40)
    assert res is None, res

    os.remove(outfile.name)