def cleanup(tb_hdfs_path): hopshdfs.log('Performing cleanup') handle = hopshdfs.get() if not tb_hdfs_path == None and not tb_hdfs_path == '' and handle.exists( tb_hdfs_path): handle.delete(tb_hdfs_path) hopshdfs.kill_logger()
def _wrapper_fun(iter): """ Args: iter: Returns: """ for i in iter: executor_num = i tb_pid = 0 tb_hdfs_path = '' hdfs_exec_logdir = '' t = threading.Thread(target=devices._print_periodic_gpu_utilization) if devices.get_num_gpus() > 0: t.start() try: #Arguments if args_dict: argcount = six.get_function_code(map_fun).co_argcount names = six.get_function_code(map_fun).co_varnames args = [] argIndex = 0 param_string = '' while argcount > 0: #Get args for executor and run function param_name = names[argIndex] param_val = args_dict[param_name][executor_num] param_string += str(param_name) + '=' + str( param_val) + '.' args.append(param_val) argcount -= 1 argIndex += 1 param_string = param_string[:-1] hdfs_exec_logdir, hdfs_appid_logdir = hopshdfs._create_directories( app_id, run_id, param_string, 'launcher') pydoop.hdfs.dump('', os.environ['EXEC_LOGFILE'], user=hopshdfs.project_user()) hopshdfs._init_logger() tb_hdfs_path, tb_pid = tensorboard._register( hdfs_exec_logdir, hdfs_appid_logdir, executor_num, local_logdir=local_logdir) gpu_str = '\nChecking for GPUs in the environment' + devices._get_gpu_info( ) hopshdfs.log(gpu_str) print(gpu_str) print( '-------------------------------------------------------') print('Started running task ' + param_string + '\n') hopshdfs.log('Started running task ' + param_string) task_start = datetime.datetime.now() map_fun(*args) task_end = datetime.datetime.now() time_str = 'Finished task ' + param_string + ' - took ' + util._time_diff( task_start, task_end) print('\n' + time_str) print( '-------------------------------------------------------') hopshdfs.log(time_str) else: hdfs_exec_logdir, hdfs_appid_logdir = hopshdfs._create_directories( app_id, run_id, None, 'launcher') pydoop.hdfs.dump('', os.environ['EXEC_LOGFILE'], user=hopshdfs.project_user()) hopshdfs._init_logger() tb_hdfs_path, tb_pid = tensorboard._register( hdfs_exec_logdir, hdfs_appid_logdir, executor_num, local_logdir=local_logdir) gpu_str = '\nChecking for GPUs in the environment' + devices._get_gpu_info( ) hopshdfs.log(gpu_str) print(gpu_str) print( '-------------------------------------------------------') print('Started running task\n') hopshdfs.log('Started running task') task_start = datetime.datetime.now() retval = map_fun() task_end = datetime.datetime.now() if retval: _handle_return(retval, hdfs_exec_logdir) time_str = 'Finished task - took ' + util._time_diff( task_start, task_end) print('\n' + time_str) print( '-------------------------------------------------------') hopshdfs.log(time_str) except: #Always do cleanup _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join() raise finally: try: if local_logdir: local_tb = tensorboard.local_logdir_path util._store_local_tensorboard(local_tb, hdfs_exec_logdir) except: pass _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join()
def _wrapper_fun(iter): """ Args: iter: Returns: """ for i in iter: executor_num = i tb_hdfs_path = '' hdfs_exec_logdir = '' t = threading.Thread(target=devices._print_periodic_gpu_utilization) if devices.get_num_gpus() > 0: t.start() task_index = None try: host = util._get_ip_address() tmp_socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM) tmp_socket.bind(('', 0)) port = tmp_socket.getsockname()[1] client = allreduce_reservation.Client(server_addr) host_port = host + ":" + str(port) client.register({"worker": host_port, "index": executor_num}) cluster = client.await_reservations() tmp_socket.close() client.close() task_index = _find_index(host_port, cluster) cluster["task"] = {"type": "worker", "index": task_index} os.environ["TF_CONFIG"] = json.dumps(cluster) if task_index == 0: hdfs_exec_logdir, hdfs_appid_logdir = hopshdfs._create_directories( app_id, run_id, None, 'collective_all_reduce') pydoop.hdfs.dump('', os.environ['EXEC_LOGFILE'], user=hopshdfs.project_user()) hopshdfs._init_logger() tb_hdfs_path, tb_pid = tensorboard._register( hdfs_exec_logdir, hdfs_appid_logdir, executor_num, local_logdir=local_logdir) gpu_str = '\nChecking for GPUs in the environment' + devices._get_gpu_info( ) if task_index == 0: hopshdfs.log(gpu_str) print(gpu_str) print('-------------------------------------------------------') print('Started running task \n') if task_index == 0: hopshdfs.log('Started running task') task_start = datetime.datetime.now() retval = map_fun() if task_index == 0: if retval: _handle_return(retval, hdfs_exec_logdir) task_end = datetime.datetime.now() time_str = 'Finished task - took ' + util._time_diff( task_start, task_end) print('\n' + time_str) print('-------------------------------------------------------') if task_index == 0: hopshdfs.log(time_str) except: #Always do cleanup _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join() raise finally: if task_index == 0: if local_logdir: local_tb = tensorboard.local_logdir_path util._store_local_tensorboard(local_tb, hdfs_exec_logdir) _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join()
def _wrapper_fun(iter): for i in iter: executor_num = i tb_pid = 0 tb_hdfs_path = '' hdfs_exec_logdir = '' t = threading.Thread(target=devices.print_periodic_gpu_utilization) if devices.get_num_gpus() > 0: t.start() global local_logdir_bool try: #Arguments if args_dict: argcount = six.get_function_code(map_fun).co_argcount names = six.get_function_code(map_fun).co_varnames args = [] argIndex = 0 param_string = '' while argcount > 0: #Get args for executor and run function param_name = names[argIndex] param_val = args_dict[param_name][executor_num] param_string += str(param_name) + '=' + str( param_val) + '.' args.append(param_val) argcount -= 1 argIndex += 1 param_string = param_string[:-1] val = _get_metric(param_string, app_id, generation_id, run_id) hdfs_exec_logdir, hdfs_appid_logdir = hopshdfs.create_directories( app_id, run_id, param_string, 'differential_evolution', sub_type='generation.' + str(generation_id)) pydoop.hdfs.dump('', os.environ['EXEC_LOGFILE'], user=hopshdfs.project_user()) hopshdfs.init_logger() tb_hdfs_path, tb_pid = tensorboard.register( hdfs_exec_logdir, hdfs_appid_logdir, executor_num, local_logdir=local_logdir_bool) gpu_str = '\nChecking for GPUs in the environment' + devices.get_gpu_info( ) hopshdfs.log(gpu_str) print(gpu_str) print( '-------------------------------------------------------') print('Started running task ' + param_string + '\n') if val: print('Reading returned metric from previous run: ' + str(val)) hopshdfs.log('Started running task ' + param_string) task_start = datetime.datetime.now() if not val: val = map_fun(*args) task_end = datetime.datetime.now() time_str = 'Finished task ' + param_string + ' - took ' + util.time_diff( task_start, task_end) print('\n' + time_str) hopshdfs.log(time_str) try: castval = int(val) except: raise ValueError( 'Your function needs to return a metric (number) which should be maximized or minimized' ) metric_file = hdfs_exec_logdir + '/metric' fs_handle = hopshdfs.get_fs() try: fd = fs_handle.open_file(metric_file, mode='w') except: fd = fs_handle.open_file(metric_file, flags='w') fd.write(str(float(val)).encode()) fd.flush() fd.close() print('Returning metric ' + str(val)) print( '-------------------------------------------------------') except: #Always do cleanup if tb_hdfs_path: _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join() raise finally: if local_logdir_bool: local_tb = tensorboard.local_logdir_path util.store_local_tensorboard(local_tb, hdfs_exec_logdir) hopshdfs.log('Finished running') if tb_hdfs_path: _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join()
def _wrapper_fun(iter): """ Args: iter: Returns: """ for i in iter: executor_num = i tb_hdfs_path = '' hdfs_exec_logdir = '' t = threading.Thread(target=devices._print_periodic_gpu_utilization) if devices.get_num_gpus() > 0: t.start() role = None client = parameter_server_reservation.Client(server_addr) try: host = util._get_ip_address() tmp_socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM) tmp_socket.bind(('', 0)) port = tmp_socket.getsockname()[1] host_port = host + ":" + str(port) exec_spec = {} if executor_num < num_ps: exec_spec["task_type"] = "ps" else: exec_spec["task_type"] = "worker" exec_spec["host_port"] = host_port exec_spec["gpus_present"] = devices.get_num_gpus() > 0 client.register(exec_spec) cluster = client.await_reservations() tmp_socket.close() role, index = _find_task_and_index(host_port, cluster) cluster_spec = {} cluster_spec["cluster"] = cluster cluster_spec["task"] = {"type": role, "index": index} print(cluster_spec) os.environ["TF_CONFIG"] = json.dumps(cluster_spec) if role == "chief": hdfs_exec_logdir, hdfs_appid_logdir = hopshdfs._create_directories( app_id, run_id, None, 'parameter_server') pydoop.hdfs.dump('', os.environ['EXEC_LOGFILE'], user=hopshdfs.project_user()) hopshdfs._init_logger() tb_hdfs_path, tb_pid = tensorboard._register( hdfs_exec_logdir, hdfs_appid_logdir, executor_num, local_logdir=local_logdir) gpu_str = '\nChecking for GPUs in the environment' + devices._get_gpu_info( ) if role == "chief": hopshdfs.log(gpu_str) print(gpu_str) print('-------------------------------------------------------') print('Started running task \n') if role == "chief": hopshdfs.log('Started running task') task_start = datetime.datetime.now() retval = None if role == "ps": ps_thread = threading.Thread(target=lambda: map_fun()) ps_thread.start() print("waiting for workers") client.await_all_workers_finished() print("waiting finished") else: retval = map_fun() if role == "chief": if retval: _handle_return(retval, hdfs_exec_logdir) task_end = datetime.datetime.now() time_str = 'Finished task - took ' + util._time_diff( task_start, task_end) print('\n' + time_str) print('-------------------------------------------------------') if role == "chief": hopshdfs.log(time_str) except: _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join() raise finally: if role == "chief": if local_logdir: local_tb = tensorboard.local_logdir_path util._store_local_tensorboard(local_tb, hdfs_exec_logdir) try: if role == "worker" or role == "chief": client.register_worker_finished() client.close() except: pass _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join()
def _wrapper_fun(iter): for i in iter: executor_num = i hdfs_exec_logdir, hdfs_appid_logdir = hopshdfs.create_directories( app_id, run_id, None, 'horovod') tb_pid = 0 tb_hdfs_path = '' pydoop.hdfs.dump('', os.environ['EXEC_LOGFILE'], user=hopshdfs.project_user()) hopshdfs.init_logger() hopshdfs.log('Starting Spark executor with arguments') if executor_num == 0: tb_hdfs_path, tb_pid = tensorboard.register( hdfs_exec_logdir, hdfs_appid_logdir, 0, local_logdir=local_logdir) gpu_str = '\n\nChecking for GPUs in the environment\n' + devices.get_gpu_info( ) hopshdfs.log(gpu_str) print(gpu_str) #1. Download notebook file fs_handle = hopshdfs.get_fs() try: fd = fs_handle.open_file(nb_path, flags='r') except: fd = fs_handle.open_file(nb_path, mode='r') notebook = '' for line in fd: notebook += line path, filename = os.path.split(nb_path) f_nb = open(filename, "w+") f_nb.write(notebook) f_nb.flush() f_nb.close() # 2. Convert notebook to py file jupyter_runnable = os.path.abspath( os.path.join(os.environ['PYSPARK_PYTHON'], os.pardir)) + '/jupyter' conversion_cmd = jupyter_runnable + ' nbconvert --to python ' + filename conversion = subprocess.Popen(conversion_cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE) conversion.wait() stdout, stderr = conversion.communicate() print(stdout) print(stderr) # 3. Make py file runnable py_runnable = os.getcwd() + '/' + filename.split('.')[0] + '.py' st = os.stat(py_runnable) os.chmod(py_runnable, st.st_mode | stat.S_IEXEC) t_gpus = threading.Thread( target=devices.print_periodic_gpu_utilization) if devices.get_num_gpus() > 0: t_gpus.start() mpi_logfile_path = os.getcwd() + '/mpirun.log' if os.path.exists(mpi_logfile_path): os.remove(mpi_logfile_path) mpi_logfile = open(mpi_logfile_path, 'w') # 4. Run allreduce mpi_np = os.environ['MPI_NP'] mpi_cmd = 'HOROVOD_TIMELINE=' + tensorboard.logdir() + '/timeline.json' + \ ' TENSORBOARD_LOGDIR=' + tensorboard.logdir() + \ ' mpirun -np ' + str(mpi_np) + \ ' -bind-to none -map-by slot ' + \ ' -x HOROVOD_TIMELINE ' + \ ' -x TENSORBOARD_LOGDIR ' + \ ' -x NCCL_DEBUG=INFO ' + \ os.environ['PYSPARK_PYTHON'] + ' ' + py_runnable mpi = subprocess.Popen(mpi_cmd, shell=True, stdout=mpi_logfile, stderr=mpi_logfile, preexec_fn=util.on_executor_exit('SIGTERM')) t_log = threading.Thread(target=print_log) t_log.start() mpi.wait() if devices.get_num_gpus() > 0: t_gpus.do_run = False t_gpus.join() return_code = mpi.returncode if local_logdir: local_tb = tensorboard.local_logdir_path pydoop.hdfs.put(local_tb, hdfs_exec_logdir) if return_code != 0: cleanup(tb_hdfs_path) t_log.do_run = False t_log.join() raise Exception('mpirun FAILED, look in the logs for the error') cleanup(tb_hdfs_path) t_log.do_run = False t_log.join() hopshdfs.kill_logger()
def _wrapper_fun(iter): """ Args: iter: Returns: """ for i in iter: executor_num = i tb_pid = 0 tb_hdfs_path = '' hdfs_exec_logdir = '' t = threading.Thread(target=devices._print_periodic_gpu_utilization) if devices.get_num_gpus() > 0: t.start() try: hdfs_exec_logdir, hdfs_appid_logdir = hopshdfs._create_directories( app_id, run_id, None, 'mirrored') pydoop.hdfs.dump('', os.environ['EXEC_LOGFILE'], user=hopshdfs.project_user()) hopshdfs._init_logger() tb_hdfs_path, tb_pid = tensorboard._register( hdfs_exec_logdir, hdfs_appid_logdir, executor_num, local_logdir=local_logdir) gpu_str = '\nChecking for GPUs in the environment' + devices._get_gpu_info( ) hopshdfs.log(gpu_str) print(gpu_str) print('-------------------------------------------------------') print('Started running task\n') hopshdfs.log('Started running task') task_start = datetime.datetime.now() retval = map_fun() task_end = datetime.datetime.now() if retval: _handle_return(retval, hdfs_exec_logdir) time_str = 'Finished task - took ' + util._time_diff( task_start, task_end) print('\n' + time_str) print('-------------------------------------------------------') hopshdfs.log(time_str) except: #Always do cleanup _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join() raise finally: try: if local_logdir: local_tb = tensorboard.local_logdir_path util._store_local_tensorboard(local_tb, hdfs_exec_logdir) except: pass _cleanup(tb_hdfs_path) if devices.get_num_gpus() > 0: t.do_run = False t.join()
def log(message): hdfs.log(str(message))