Python RunCommand示例

示例#1

文件： pba_spheroidTNF.py 项目： pradas/pba_spheroidTNF

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='pba_spheroidTNF',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='pba_spheroidTNF',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#2

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                       start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='pb4covid19',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                            done_func=run_done_func,
                            cachename='pb4covid19',
                            showcache=False,
                            outcb=outcb)  
    else:
        run_button = widgets.Button(
            description='Run',
            button_style='success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)


if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#3

文件： immunesys_ode.py 项目： yafeiwang89/immunesys_ode

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='immunesys_ode',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='immunesys_ode',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

read_config = widgets.Dropdown(
    description='Load Config',
    options=get_config_files(),
    tooltip='Config File or Previous Run',

示例#4

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='liver_medium',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='liver_medium',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#5

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='trsecretion',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='trsecretion',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#6

文件： leadfollow.py 项目： johnmetzcar/pc_ECM_model_for_nanoHUB

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                       start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='physicellecm',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                            done_func=run_done_func,
                            cachename='physicellecm',
                            showcache=False,
                            outcb=outcb)  
    else:
        run_button = widgets.Button(
            description='Run',
            button_style='success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)


if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#7

文件： tsbiofilmsp19.py 项目： furkankurtoglu/tsbiofilmsp19

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='tsbiofilmsp19',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='tsbiofilmsp19',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

read_config = widgets.Dropdown(
    description='Load Config',
    options=get_config_files(),
    tooltip='Config File or Previous Run',

示例#8

    # It gets tricky if we are, because the process can be waiting for input while we're waiting for output.
#     while True:
#         # Wait for some output, read it and print it.
#         with run_output:
#             my_output = my_proc.stdout.read1(1024).decode('utf-8')
#             print(my_output, end='')

#         # Has the subprocess finished yet?
#         if my_proc.poll() is not None:
#             break

    if my_proc.returncode != 0:
        print("Exited with error code:", my_proc.returncode)

        
run_button = RunCommand(start_func=run_sim_func)  # optionally: , done_func=read_data

# run_button = Button(
#     description='Run',
#     disabled=False,
#     button_style='success', # 'success', 'info', 'warning', 'danger' or ''
#     tooltip='Run simulation',
# )
# run_button.on_click(run_cb)

# def kill_cb(b):
#     global my_proc
#     print('kill sim...')
#     my_proc.terminate()
    
# kill_button = Button(

示例#9

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='Hypoxia_simulator',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='Hypoxia_simulator',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#10

文件： NanoHub_Epil_viral_veins_project.py 项目： AdrianneJenner/NanoHub-Epil-viral-veins-project

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='NanoHub_Epil_viral_veins_project',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='NanoHub_Epil_viral_veins_project',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

read_config = widgets.Dropdown(
    description='Load Config',
    options=get_config_files(),
    tooltip='Config File or Previous Run',

示例#11

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='Ulises_app',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='Ulises_app',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#12

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='Cycle_Training',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='Cycle_Training',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#13

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='Motility_Training_App',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='Motility_Training_App',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#14

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='antibacterial',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='antibacterial',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#15

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                       start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='edu4mechanics',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                            done_func=run_done_func,
                            cachename='edu4mechanics',
                            showcache=False,
                            outcb=outcb)  
    else:
        run_button = widgets.Button(
            description='Run',
            button_style='success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)


if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#16

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='virion2receptor',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='virion2receptor',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#17

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='project_repo_ecm_simul',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='project_repo_ecm_simul',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#18

文件： jupyter.py 项目： devinkeller/pcAntiRes

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='jupyter',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='jupyter',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#19

文件： iu399sp19p017.py 项目： JulianoGianlupi/iu399sp19p017

    #    subprocess.call(["myproj", new_config_file], shell=True)  # no
    subprocess.Popen(["myproj", new_config_file])


if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='iu399sp19p017',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='iu399sp19p017',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

read_config = widgets.Dropdown(
    description='Load Config',
    options=get_config_files(),
    tooltip='Config File or Previous Run',

示例#20

文件： pc4nanobio.py 项目： rheiland/pc4nanobio

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='pc4nanobio',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='pc4nanobio',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#21

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                       start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='pharmacodynamics2GUI',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                            done_func=run_done_func,
                            cachename='pharmacodynamics2GUI',
                            showcache=False,
                            outcb=outcb)  
    else:
        run_button = widgets.Button(
            description='Run',
            button_style='success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)


if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),

示例#22

    #    subprocess.call(["myproj", new_config_file], shell=True)  # no
    subprocess.Popen(["myproj", new_config_file])


if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='pc4cancerimmune',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='pc4cancerimmune',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

read_config = widgets.Dropdown(
    description='Load Config',
    options=get_config_files(),
    tooltip='Config File or Previous Run',

示例#23

    subprocess.Popen(["../bin/myproj", "config.xml"])


#-------------------------------------------------
if nanoHUB_flag:
    run_button = Submit(label='Run',
                        start_func=run_sim_func,
                        done_func=run_done_func,
                        cachename='tr_microenvironment_nanohub',
                        showcache=False,
                        outcb=outcb)
else:
    if (hublib_flag):
        run_button = RunCommand(start_func=run_sim_func,
                                done_func=run_done_func,
                                cachename='tr_microenvironment_nanohub',
                                showcache=False,
                                outcb=outcb)
    else:
        run_button = widgets.Button(
            description='Run',
            button_style=
            'success',  # 'success', 'info', 'warning', 'danger' or ''
            tooltip='Run a simulation',
        )
        run_button.on_click(run_button_cb)

if nanoHUB_flag or hublib_flag:
    read_config = widgets.Dropdown(
        description='Load Config',
        options=get_config_files(),