def test_non_square():
signal = hs.signals.Signal2D((255 * np.random.rand(10, 3, 5, 6)
).astype(np.uint8))
try:
with nt.assert_raises(ValueError):
signal.save(save_path, overwrite=True)
finally:
remove_file(save_path)
def test_write_data_am_mismatch():
signal = hs.signals.Signal2D((255 * np.random.rand(10, 3, 5, 5)
).astype(np.uint8))
signal.axes_manager.navigation_axes[1].size = 4
try:
with nt.assert_raises(ValueError):
signal.save(save_path, overwrite=True)
finally:
remove_file(save_path)
def test_write_data_single():
signal = hs.signals.Signal2D((255 * np.random.rand(5, 5)
).astype(np.uint8))
try:
signal.save(save_path, overwrite=True)
sig_reload = hs.load(save_path)
np.testing.assert_equal(signal.data, sig_reload.data)
finally:
remove_file(save_path)
def test_crop_notes():
note_len = 0x1000 - 0xF0
note = 'test123' * 1000 # > note_len
signal = hs.signals.Signal2D((255 * np.random.rand(2, 3, 2, 2)
).astype(np.uint8))
signal.original_metadata.add_node('blockfile_header.Note')
signal.original_metadata.blockfile_header.Note = note
try:
signal.save(save_path, overwrite=True)
sig_reload = hs.load(save_path)
nt.assert_equal(sig_reload.original_metadata.blockfile_header.Note,
note[:note_len])
finally:
remove_file(save_path)
def test_save_load_cycle():
sig_reload = None
signal = hs.load(file2)
try:
signal.save(save_path, overwrite=True)
sig_reload = hs.load(save_path)
np.testing.assert_equal(signal.data, sig_reload.data)
assert_deep_almost_equal(signal.axes_manager.as_dictionary(), axes3,
places=8)
assert_deep_almost_equal(signal.original_metadata.as_dictionary(),
sig_reload.original_metadata.as_dictionary(),
places=8)
nt.assert_is_instance(signal, hs.signals.Signal2D)
finally:
# Delete reference to close memmap file!
del sig_reload
gc.collect()
remove_file(save_path)
def test_write_cutoff():
signal = hs.signals.Signal2D((255 * np.random.rand(10, 3, 5, 5)
).astype(np.uint8))
signal.axes_manager.navigation_axes[0].size = 20
try:
signal.save(save_path, overwrite=True)
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter("always")
sig_reload = hs.load(save_path)
assert len(w) == 1
assert issubclass(w[-1].category, UserWarning)
assert "Blockfile header" in str(w[-1].message)
cut_data = signal.data.flatten()
pw = [(0, 17 * 10 * 5 * 5)]
cut_data = np.pad(cut_data, pw, mode='constant')
cut_data = cut_data.reshape((10, 20, 5, 5))
np.testing.assert_equal(cut_data, sig_reload.data)
finally:
remove_file(save_path)
def test_load_inplace():
sig_reload = None
signal = hs.signals.Signal2D((255 * np.random.rand(2, 3, 2, 2)
).astype(np.uint8))
try:
signal.save(save_path, overwrite=True)
del signal
sig_reload = hs.load(save_path, load_to_memory=False, mmap_mode='r+')
sig_reload.data[:] = 23
# Flush and close memmap:
del sig_reload
gc.collect()
# Check if values were written to disk
sig_reload = hs.load(save_path, load_to_memory=False, mmap_mode='r')
nt.assert_true(np.all(sig_reload.data == 23))
finally:
# Delete reference to close memmap file!
del sig_reload
gc.collect()
remove_file(save_path)
def test_write_fresh():
signal = hs.signals.Signal2D((255 * np.random.rand(10, 3, 5, 5)
).astype(np.uint8))
try:
signal.save(save_path, overwrite=True)
sig_reload = hs.load(save_path)
np.testing.assert_equal(signal.data, sig_reload.data)
header = sarray2dict(get_default_header())
header.update({
'NX': 3, 'NY': 10,
'DP_SZ': 5,
'SX': 1, 'SY': 1,
'SDP': 100,
'Data_offset_2': 10 * 3 + header['Data_offset_1'],
'Note': '',
})
header['Data_offset_2'] += header['Data_offset_2'] % 16
nt.assert_equal(
sig_reload.original_metadata.blockfile_header.as_dictionary(),
header)
finally:
remove_file(save_path)