def setUpClass(cls) -> None:
probe = ['probe00', 'probe01']
create_alyx_probe_insertions(session_path=EPHYS_SESSION,
model='3B2',
labels=probe,
one=one,
force=True)
cls.probe_id = one.alyx.rest('insertions',
'list',
session=EPHYS_SESSION,
name='probe00')[0]['id']
cls.probe_id2 = one.alyx.rest('insertions',
'list',
session=EPHYS_SESSION,
name='probe01')[0]['id']
data = np.load(Path(
Path(__file__).parent.joinpath('fixtures',
'data_alignmentqc_gui.npz')),
allow_pickle=True)
cls.xyz_picks = data['xyz_picks']
cls.alignments = data['alignments'].tolist()
cls.cluster_chns = data['cluster_chns']
register_track(cls.probe_id,
picks=cls.xyz_picks,
one=one,
overwrite=True,
channels=False)
register_track(cls.probe_id2,
picks=cls.xyz_picks,
one=one,
overwrite=True,
channels=False)
def test_tracing_exists(self):
register_track(self.probe00_id, picks=self.xyz_picks, one=one, overwrite=True,
channels=False)
insertion = one.alyx.rest('insertions', 'read', id=self.probe00_id)
assert (insertion['json']['qc'] == 'NOT_SET')
assert (insertion['json']['extended_qc']['tracing_exists'] == 1)
def test_tracing_not_exists(self):
register_track(self.probe01_id,
picks=None,
one=one,
overwrite=True,
channels=False)
insertion = one.alyx.rest('insertions', 'read', id=self.probe01_id)
assert (insertion['json']['qc'] == 'CRITICAL')
assert (insertion['json']['extended_qc']['tracing_exists'] == 0)
def test_tracing_not_exists(self):
register_track(self.probe01_id,
picks=None,
one=one,
overwrite=True,
channels=False,
brain_atlas=brain_atlas)
insertion = one.alyx.get('/insertions/' + self.probe01_id,
clobber=True)
assert (insertion['json']['qc'] == 'CRITICAL')
assert (insertion['json']['extended_qc']['tracing_exists'] == 0)
def test_tracing_exists(self):
register_track(self.probe00_id,
picks=self.xyz_picks,
one=one,
overwrite=True,
channels=False,
brain_atlas=brain_atlas)
insertion = one.alyx.get('/insertions/' + self.probe00_id,
clobber=True)
assert (insertion['json']['qc'] == 'NOT_SET')
assert (insertion['json']['extended_qc']['tracing_exists'] == 1)