def _test_rename_ephys_files(self, path, expected_n):
"""Test SpikeGLX output files are correctly renamed"""
misc.rename_ephys_files(path)
n = 0
for f in path.rglob("*.*.*"):
if any(x in f.name for x in ('.ap.', '.lf.', '.nidq.')):
self.assertTrue(f.name.startswith('_spikeglx_ephysData_g'))
n += 1
self.assertEqual(expected_n, n)
def _test_rename_ephys_files(self):
# Test 3A
misc.rename_ephys_files(self.local_session_path_3A)
ap_files = list(self.local_session_path_3A.rglob('*.ap.*'))
lf_files = list(self.local_session_path_3A.rglob('*.lf.*'))
self.assertTrue(len(ap_files) >= 1)
self.assertTrue(len(lf_files) >= 1)
for f in ap_files:
print(f.parent.name, f.name)
self.assertTrue('_spikeglx_ephysData_g' in str(f))
self.assertTrue('_t' in str(f))
self.assertTrue('.imec.ap' in str(f))
self.assertTrue(('.bin' in str(f) or '.meta' in str(f)))
self.assertTrue(('probe00' in str(f) or 'probe01' in str(f)))
for f in lf_files:
print(f.parent.name, f.name)
self.assertTrue('_spikeglx_ephysData_g' in str(f))
self.assertTrue('_t' in str(f))
self.assertTrue('.imec.lf' in str(f))
self.assertTrue(('.bin' in str(f) or '.meta' in str(f))) # Test 3B
self.assertTrue(('probe00' in str(f) or 'probe01' in str(f)))
# Test 3B
misc.rename_ephys_files(self.local_session_path_3B)
ap_files = list(self.local_session_path_3B.rglob('*.ap.*'))
lf_files = list(self.local_session_path_3B.rglob('*.lf.*'))
nidq_files = list(self.local_session_path_3B.rglob('*.nidq.*'))
for f in ap_files:
print(f.name)
self.assertTrue('_spikeglx_ephysData_g' in str(f))
self.assertTrue('_t' in str(f))
self.assertTrue(('.imec0.ap' in str(f) or 'imec1.ap' in str(f)))
self.assertTrue(('.bin' in str(f) or '.meta' in str(f)))
for f in lf_files:
print(f.name)
self.assertTrue('_spikeglx_ephysData_g' in str(f))
self.assertTrue('_t' in str(f))
self.assertTrue(('.imec0.lf' in str(f) or 'imec1.lf' in str(f)))
self.assertTrue(('.bin' in str(f) or '.meta' in str(f))) # Test 3B
for f in nidq_files:
print(f.name)
self.assertTrue('_spikeglx_ephysData_g' in str(f))
self.assertTrue('_t' in str(f))
self.assertTrue('.nidq' in str(f))
self.assertTrue(('.bin' in str(f) or '.meta' in str(f)))
def _test_rename_ephys_files(self):
# Test 3A
misc.rename_ephys_files(self.local_session_path_3A)
ap_files = list(self.local_session_path_3A.rglob("*.ap.*"))
lf_files = list(self.local_session_path_3A.rglob("*.lf.*"))
self.assertTrue(len(ap_files) >= 1)
self.assertTrue(len(lf_files) >= 1)
for f in ap_files:
print(f.parent.name, f.name)
self.assertTrue("_spikeglx_ephysData_g" in str(f))
self.assertTrue("_t" in str(f))
self.assertTrue(".imec.ap" in str(f))
self.assertTrue((".bin" in str(f) or ".meta" in str(f)))
self.assertTrue(("probe00" in str(f) or "probe01" in str(f)))
for f in lf_files:
print(f.parent.name, f.name)
self.assertTrue("_spikeglx_ephysData_g" in str(f))
self.assertTrue("_t" in str(f))
self.assertTrue(".imec.lf" in str(f))
self.assertTrue((".bin" in str(f) or ".meta" in str(f))) # Test 3B
self.assertTrue(("probe00" in str(f) or "probe01" in str(f)))
# Test 3B
misc.rename_ephys_files(self.local_session_path_3B)
ap_files = list(self.local_session_path_3B.rglob("*.ap.*"))
lf_files = list(self.local_session_path_3B.rglob("*.lf.*"))
nidq_files = list(self.local_session_path_3B.rglob("*.nidq.*"))
for f in ap_files:
print(f.name)
self.assertTrue("_spikeglx_ephysData_g" in str(f))
self.assertTrue("_t" in str(f))
self.assertTrue((".imec0.ap" in str(f) or "imec1.ap" in str(f)))
self.assertTrue((".bin" in str(f) or ".meta" in str(f)))
for f in lf_files:
print(f.name)
self.assertTrue("_spikeglx_ephysData_g" in str(f))
self.assertTrue("_t" in str(f))
self.assertTrue((".imec0.lf" in str(f) or "imec1.lf" in str(f)))
self.assertTrue((".bin" in str(f) or ".meta" in str(f))) # Test 3B
for f in nidq_files:
print(f.name)
self.assertTrue("_spikeglx_ephysData_g" in str(f))
self.assertTrue("_t" in str(f))
self.assertTrue(".nidq" in str(f))
self.assertTrue((".bin" in str(f) or ".meta" in str(f)))