def sync_check(tph):
events = tph.behavior_data["Events timestamps"]
ev_bnc1 = get_port_events(events, name="BNC1")
ev_bnc2 = get_port_events(events, name="BNC2")
ev_port1 = get_port_events(events, name="Port1")
NOT_FOUND = "COULD NOT FIND DATA ON {}"
bnc1_msg = NOT_FOUND.format("BNC1") if not ev_bnc1 else "OK"
bnc2_msg = NOT_FOUND.format("BNC2") if not ev_bnc2 else "OK"
port1_msg = NOT_FOUND.format("Port1") if not ev_port1 else "OK"
warn_msg = f"""
##########################################
NOT FOUND: SYNC PULSES
##########################################
VISUAL STIMULUS SYNC: {bnc1_msg}
SOUND SYNC: {bnc2_msg}
CAMERA SYNC: {port1_msg}
##########################################"""
if not ev_bnc1 or not ev_bnc2 or not ev_port1:
log.warning(warn_msg)
def sync_check(tph):
events = tph.behavior_data['Events timestamps']
ev_bnc1 = get_port_events(events, name='BNC1')
ev_bnc2 = get_port_events(events, name='BNC2')
ev_port1 = get_port_events(events, name='Port1')
NOT_FOUND = 'COULD NOT FIND DATA ON {}'
bnc1_msg = NOT_FOUND.format('BNC1') if not ev_bnc1 else 'OK'
bnc2_msg = NOT_FOUND.format('BNC2') if not ev_bnc2 else 'OK'
port1_msg = NOT_FOUND.format('Port1') if not ev_port1 else 'OK'
warn_msg = f"""
##########################################
NOT FOUND: SYNC PULSES
##########################################
VISUAL STIMULUS SYNC: {bnc1_msg}
SOUND SYNC: {bnc2_msg}
CAMERA SYNC: {port1_msg}
##########################################"""
if not ev_bnc1 or not ev_bnc2 or not ev_port1:
log.warning(warn_msg)
def get_port_events(self, events, name=''):
return misc.get_port_events(events, name=name)
raise FileNotFoundError(f"{session_data_file}")
if session_data_file.name.endswith(".jsonable"):
data = raw.load_data(session_data_file.parent.parent)
else:
try:
data = raw.load_data(session_data_file)
except Exception:
print("Not a file or a valid session folder")
unsynced_trial_count = 0
frame2ttl = []
sound = []
camera = []
trial_end = []
for trial_data in data:
tevents = trial_data["behavior_data"]["Events timestamps"]
ev_bnc1 = get_port_events(tevents, name="BNC1")
ev_bnc2 = get_port_events(tevents, name="BNC2")
ev_port1 = get_port_events(tevents, name="Port1")
if not ev_bnc1 or not ev_bnc2 or not ev_port1:
unsynced_trial_count += 1
frame2ttl.extend(ev_bnc1)
sound.extend(ev_bnc2)
camera.extend(ev_port1)
trial_end.append(trial_data["behavior_data"]["Trial end timestamp"])
print(f"Found {unsynced_trial_count} trials with bad sync data")
f = plt.figure() # figsize=(19.2, 10.8), dpi=100)
ax = plt.subplot2grid((1, 1), (0, 0), rowspan=1, colspan=1)
ax.plot(camera, np.ones(len(camera)) * 1, "|")
ax.plot(sound, np.ones(len(sound)) * 2, "|")
raise (FileNotFoundError)
if session_data_file.name.endswith('.jsonable'):
data = raw.load_data(session_data_file.parent.parent)
else:
try:
data = raw.load_data(session_data_file)
except Exception:
print('Not a file or a valid session folder')
unsynced_trial_count = 0
frame2ttl = []
sound = []
camera = []
trial_end = []
for trial_data in data:
tevents = trial_data['behavior_data']['Events timestamps']
ev_bnc1 = get_port_events(tevents, name='BNC1')
ev_bnc2 = get_port_events(tevents, name='BNC2')
ev_port1 = get_port_events(tevents, name='Port1')
if not ev_bnc1 or not ev_bnc2 or not ev_port1:
unsynced_trial_count += 1
frame2ttl.extend(ev_bnc1)
sound.extend(ev_bnc2)
camera.extend(ev_port1)
trial_end.append(trial_data['behavior_data']['Trial end timestamp'])
print(f'Found {unsynced_trial_count} trials with bad sync data')
f = plt.figure() # figsize=(19.2, 10.8), dpi=100)
ax = plt.subplot2grid((1, 1), (0, 0), rowspan=1, colspan=1)
ax.plot(camera, np.ones(len(camera)) * 1, '|')
ax.plot(sound, np.ones(len(sound)) * 2, '|')
