def __init__(self, task_settings, user_settings):
# =====================================================================
# IMPORT task_settings, user_settings, and SessionPathCreator params
# =====================================================================
ts = {
i: task_settings.__dict__[i]
for i in [x for x in dir(task_settings) if '__' not in x]
}
self.__dict__.update(ts)
us = {
i: user_settings.__dict__[i]
for i in [x for x in dir(user_settings) if '__' not in x]
}
self.__dict__.update(us)
self = iotasks.deserialize_pybpod_user_settings(self)
spc = SessionPathCreator(self.IBLRIG_FOLDER,
self.IBLRIG_DATA_FOLDER,
self.PYBPOD_SUBJECTS[0],
protocol=self.PYBPOD_PROTOCOL,
board=self.PYBPOD_BOARD,
make=True)
self.__dict__.update(spc.__dict__)
# =====================================================================
# OSC CLIENT
# =====================================================================
self.OSC_CLIENT_PORT = 7110
self.OSC_CLIENT_IP = '127.0.0.1'
self.OSC_CLIENT = udp_client.SimpleUDPClient(self.OSC_CLIENT_IP,
self.OSC_CLIENT_PORT)
# =====================================================================
# frame2TTL
# =====================================================================
self.F2TTL_GET_AND_SET_THRESHOLDS = frame2TTL.get_and_set_thresholds(
self)
# =====================================================================
# ROTARY ENCODER
# =====================================================================
self.ALL_THRESHOLDS = self.STIM_POSITIONS
self.ROTARY_ENCODER = MyRotaryEncoder(self.ALL_THRESHOLDS,
self.STIM_GAIN,
self.COM['ROTARY_ENCODER'])
# =====================================================================
# SOUNDS
# =====================================================================
self.SOUND_SAMPLE_FREQ = sound.sound_sample_freq(self.SOFT_SOUND)
self.GO_TONE_DURATION = float(self.GO_TONE_DURATION)
self.GO_TONE_FREQUENCY = int(self.GO_TONE_FREQUENCY)
self.GO_TONE_AMPLITUDE = float(self.GO_TONE_AMPLITUDE)
self.SD = sound.configure_sounddevice(
output=self.SOFT_SOUND, samplerate=self.SOUND_SAMPLE_FREQ)
self.SOUND_BOARD_BPOD_PORT = 'Serial3'
self.GO_TONE_IDX = 2
self.GO_TONE = None
self = sound.init_sounds(self, noise=False)
if self.SOFT_SOUND is None:
sound.configure_sound_card(sounds=[self.GO_TONE],
indexes=[self.GO_TONE_IDX],
sample_rate=self.SOUND_SAMPLE_FREQ)
self.OUT_STOP_SOUND = ('SoftCode',
0) if self.SOFT_SOUND else ('Serial3', ord('X'))
self.OUT_TONE = ('SoftCode', 1) if self.SOFT_SOUND else ('Serial3', 5)
# =====================================================================
# RUN VISUAL STIM
# =====================================================================
bonsai.start_visual_stim(self)
# =====================================================================
# SAVE SETTINGS FILE AND TASK CODE
# =====================================================================
iotasks.save_session_settings(self)
iotasks.copy_task_code(self)
iotasks.save_task_code(self)
self.bad_stim_count = 0
self.bad_tone_count = 0
def __init__(self, task_settings, user_settings, debug=False, fmake=True):
self.DEBUG = debug
make = False if not fmake else ['video']
# =====================================================================
# IMPORT task_settings, user_settings, and SessionPathCreator params
# =====================================================================
ts = {
i: task_settings.__dict__[i]
for i in [x for x in dir(task_settings) if '__' not in x]
}
self.__dict__.update(ts)
us = {
i: user_settings.__dict__[i]
for i in [x for x in dir(user_settings) if '__' not in x]
}
self.__dict__.update(us)
self = iotasks.deserialize_pybpod_user_settings(self)
spc = SessionPathCreator(self.PYBPOD_SUBJECTS[0],
protocol=self.PYBPOD_PROTOCOL,
make=make)
self.__dict__.update(spc.__dict__)
# =====================================================================
# SUBJECT
# =====================================================================
self.SUBJECT_WEIGHT = user.ask_subject_weight(self.PYBPOD_SUBJECTS[0])
self.SUBJECT_DISENGAGED_TRIGGERED = False
self.SUBJECT_DISENGAGED_TRIALNUM = None
# =====================================================================
# OSC CLIENT
# =====================================================================
self.OSC_CLIENT_PORT = 7110
self.OSC_CLIENT_IP = '127.0.0.1'
self.OSC_CLIENT = udp_client.SimpleUDPClient(self.OSC_CLIENT_IP,
self.OSC_CLIENT_PORT)
# =====================================================================
# PREVIOUS DATA FILES
# =====================================================================
self.LAST_TRIAL_DATA = iotasks.load_data(self.PREVIOUS_SESSION_PATH)
self.LAST_SETTINGS_DATA = iotasks.load_settings(
self.PREVIOUS_SESSION_PATH)
# =====================================================================
# ADAPTIVE STUFF
# =====================================================================
self.AR_MIN_VALUE = 1.5 if 'Sucrose' in self.REWARD_TYPE else 2.0
self.REWARD_AMOUNT = adaptive.init_reward_amount(self)
self.CALIB_FUNC = None
if self.AUTOMATIC_CALIBRATION:
self.CALIB_FUNC = adaptive.init_calib_func()
self.CALIB_FUNC_RANGE = adaptive.init_calib_func_range()
self.REWARD_VALVE_TIME = adaptive.init_reward_valve_time(self)
self.STIM_GAIN = adaptive.init_stim_gain(self)
self.IMPULSIVE_CONTROL = 'OFF'
self = adaptive.impulsive_control(self)
# =====================================================================
# frame2TTL
# =====================================================================
self.F2TTL_GET_AND_SET_THRESHOLDS = frame2TTL.get_and_set_thresholds()
# =====================================================================
# ROTARY ENCODER
# =====================================================================
self.ALL_THRESHOLDS = (self.STIM_POSITIONS +
self.QUIESCENCE_THRESHOLDS)
self.ROTARY_ENCODER = MyRotaryEncoder(
self.ALL_THRESHOLDS, self.STIM_GAIN,
self.PARAMS['COM_ROTARY_ENCODER'])
# =====================================================================
# SOUNDS
# =====================================================================
self.SOFT_SOUND = None if 'ephys' in self._BOARD else self.SOFT_SOUND
self.SOUND_SAMPLE_FREQ = sound.sound_sample_freq(self.SOFT_SOUND)
self.WHITE_NOISE_DURATION = float(self.WHITE_NOISE_DURATION)
self.WHITE_NOISE_AMPLITUDE = float(self.WHITE_NOISE_AMPLITUDE)
self.GO_TONE_DURATION = float(self.GO_TONE_DURATION)
self.GO_TONE_FREQUENCY = int(self.GO_TONE_FREQUENCY)
self.GO_TONE_AMPLITUDE = float(self.GO_TONE_AMPLITUDE)
self.SD = sound.configure_sounddevice(
output=self.SOFT_SOUND, samplerate=self.SOUND_SAMPLE_FREQ)
# Create sounds and output actions of state machine
self.SOUND_BOARD_BPOD_PORT = 'Serial3'
self.GO_TONE = None
self.WHITE_NOISE = None
self.GO_TONE_IDX = 2
self.WHITE_NOISE_IDX = 3
self = sound.init_sounds(self) # sets GO_TONE and WHITE_NOISE
if self.SOFT_SOUND is None:
sound.configure_sound_card(
sounds=[self.GO_TONE, self.WHITE_NOISE],
indexes=[self.GO_TONE_IDX, self.WHITE_NOISE_IDX],
sample_rate=self.SOUND_SAMPLE_FREQ)
self.OUT_STOP_SOUND = ('SoftCode',
0) if self.SOFT_SOUND else ('Serial3', ord('X'))
self.OUT_TONE = ('SoftCode', 1) if self.SOFT_SOUND else ('Serial3', 6)
self.OUT_NOISE = ('SoftCode', 2) if self.SOFT_SOUND else ('Serial3', 7)
# =====================================================================
# RUN VISUAL STIM
# =====================================================================
bonsai.start_visual_stim(self)
# =====================================================================
# SAVE SETTINGS FILE AND TASK CODE
# =====================================================================
if not self.DEBUG:
iotasks.save_session_settings(self)
iotasks.copy_task_code(self)
iotasks.save_task_code(self)
iotasks.copy_video_code(self)
iotasks.save_video_code(self)
self.bpod_lights(0)
self.display_logs()
def __init__(self, task_settings, user_settings, debug=False, fmake=True):
self.DEBUG = debug
make = False if not fmake else ["video"]
# =====================================================================
# IMPORT task_settings, user_settings, and SessionPathCreator params
# =====================================================================
ts = {
i: task_settings.__dict__[i]
for i in [x for x in dir(task_settings) if "__" not in x]
}
self.__dict__.update(ts)
us = {
i: user_settings.__dict__[i]
for i in [x for x in dir(user_settings) if "__" not in x]
}
self.__dict__.update(us)
self = iotasks.deserialize_pybpod_user_settings(self)
spc = SessionPathCreator(self.PYBPOD_SUBJECTS[0],
protocol=self.PYBPOD_PROTOCOL,
make=make)
self.__dict__.update(spc.__dict__)
# =====================================================================
# SUBJECT
# =====================================================================
self.SUBJECT_WEIGHT = user.ask_subject_weight(self.PYBPOD_SUBJECTS[0])
# =====================================================================
# OSC CLIENT
# =====================================================================
self.OSC_CLIENT_PORT = 7110
self.OSC_CLIENT_IP = "127.0.0.1"
self.OSC_CLIENT = udp_client.SimpleUDPClient(self.OSC_CLIENT_IP,
self.OSC_CLIENT_PORT)
# =====================================================================
# frame2TTL
# =====================================================================
self.F2TTL_GET_AND_SET_THRESHOLDS = frame2TTL.get_and_set_thresholds()
# =====================================================================
# ADAPTIVE STUFF
# =====================================================================
self.CALIB_FUNC = None
if self.AUTOMATIC_CALIBRATION:
self.CALIB_FUNC = adaptive.init_calib_func()
self.CALIB_FUNC_RANGE = adaptive.init_calib_func_range()
self.REWARD_VALVE_TIME = adaptive.init_reward_valve_time(self)
self.STIM_GAIN = 8.0
# =====================================================================
# ROTARY ENCODER
# =====================================================================
self.ALL_THRESHOLDS = self.STIM_POSITIONS
self.ROTARY_ENCODER = MyRotaryEncoder(
self.ALL_THRESHOLDS, self.STIM_GAIN,
self.PARAMS["COM_ROTARY_ENCODER"])
# =====================================================================
# SOUNDS
# =====================================================================
self.SOFT_SOUND = None if "ephys" in self.PYBPOD_BOARD else self.SOFT_SOUND
self.SOUND_SAMPLE_FREQ = sound.sound_sample_freq(self.SOFT_SOUND)
self.GO_TONE_DURATION = float(self.GO_TONE_DURATION)
self.GO_TONE_FREQUENCY = int(self.GO_TONE_FREQUENCY)
self.GO_TONE_AMPLITUDE = float(self.GO_TONE_AMPLITUDE)
self.SD = sound.configure_sounddevice(
output=self.SOFT_SOUND, samplerate=self.SOUND_SAMPLE_FREQ)
self.SOUND_BOARD_BPOD_PORT = "Serial3"
self.GO_TONE_IDX = 2
self.GO_TONE = None
self = sound.init_sounds(self, noise=False)
if self.SOFT_SOUND is None:
sound.configure_sound_card(
sounds=[self.GO_TONE],
indexes=[self.GO_TONE_IDX],
sample_rate=self.SOUND_SAMPLE_FREQ,
)
self.OUT_STOP_SOUND = (("SoftCode", 0) if self.SOFT_SOUND else
("Serial3", ord("X")))
self.OUT_TONE = ("SoftCode", 1) if self.SOFT_SOUND else ("Serial3", 5)
# =====================================================================
# RUN VISUAL STIM
# =====================================================================
bonsai.start_visual_stim(self)
# =====================================================================
# SAVE SETTINGS FILE AND TASK CODE
# =====================================================================
if not self.DEBUG:
iotasks.save_session_settings(self)
iotasks.copy_task_code(self)
iotasks.save_task_code(self)
iotasks.copy_video_code(self)
iotasks.save_video_code(self)
self.bpod_lights(0)
def __init__(self, task_settings, user_settings, debug=False, fmake=True):
self.DEBUG = debug
# =====================================================================
# IMPORT task_settings, user_settings, and SessionPathCreator params
# =====================================================================
ts = {
i: task_settings.__dict__[i]
for i in [x for x in dir(task_settings) if "__" not in x]
}
self.__dict__.update(ts)
us = {
i: user_settings.__dict__[i]
for i in [x for x in dir(user_settings) if "__" not in x]
}
self.__dict__.update(us)
self = iotasks.deserialize_pybpod_user_settings(self)
if not fmake:
make = False
elif fmake and "ephys" in self.PYBPOD_BOARD:
make = True # True makes only raw_behavior_data folder
else:
make = ["video"] # besides behavior which folders to creae
spc = SessionPathCreator(self.PYBPOD_SUBJECTS[0],
protocol=self.PYBPOD_PROTOCOL,
make=make)
self.__dict__.update(spc.__dict__)
# =====================================================================
# DELAY SESSION INITIATION BY
# =====================================================================
self.SESSION_START_DELAY_SEC = 0
# =====================================================================
# frame2TTL
# =====================================================================
self.F2TTL_GET_AND_SET_THRESHOLDS = frame2TTL.get_and_set_thresholds()
# =====================================================================
# SUBJECT
# =====================================================================
self.SUBJECT_WEIGHT = user.ask_subject_weight(self.PYBPOD_SUBJECTS[0])
self.SUBJECT_DISENGAGED_TRIGGERED = False
self.SUBJECT_DISENGAGED_TRIALNUM = None
# =====================================================================
# OSC CLIENT
# =====================================================================
self.OSC_CLIENT_PORT = 7110
self.OSC_CLIENT_IP = "127.0.0.1"
self.OSC_CLIENT = udp_client.SimpleUDPClient(self.OSC_CLIENT_IP,
self.OSC_CLIENT_PORT)
# =====================================================================
# PREVIOUS DATA FILES
# =====================================================================
self.LAST_TRIAL_DATA = iotasks.load_data(self.PREVIOUS_SESSION_PATH)
self.LAST_SETTINGS_DATA = iotasks.load_settings(
self.PREVIOUS_SESSION_PATH)
# =====================================================================
# ADAPTIVE STUFF
# =====================================================================
self.CALIB_FUNC = None
if self.AUTOMATIC_CALIBRATION:
self.CALIB_FUNC = adaptive.init_calib_func()
self.CALIB_FUNC_RANGE = adaptive.init_calib_func_range()
self.REWARD_VALVE_TIME = adaptive.init_reward_valve_time(self)
# =====================================================================
# ROTARY ENCODER
# =====================================================================
self.ALL_THRESHOLDS = self.STIM_POSITIONS + self.QUIESCENCE_THRESHOLDS
self.ROTARY_ENCODER = MyRotaryEncoder(
self.ALL_THRESHOLDS, self.STIM_GAIN,
self.PARAMS["COM_ROTARY_ENCODER"])
# =====================================================================
# SOUNDS
# =====================================================================
self.SOFT_SOUND = None if "ephys" in self.PYBPOD_BOARD else self.SOFT_SOUND
self.SOUND_SAMPLE_FREQ = sound.sound_sample_freq(self.SOFT_SOUND)
self.WHITE_NOISE_DURATION = float(self.WHITE_NOISE_DURATION)
self.WHITE_NOISE_AMPLITUDE = float(self.WHITE_NOISE_AMPLITUDE)
self.GO_TONE_DURATION = float(self.GO_TONE_DURATION)
self.GO_TONE_FREQUENCY = int(self.GO_TONE_FREQUENCY)
self.GO_TONE_AMPLITUDE = float(self.GO_TONE_AMPLITUDE)
self.SD = sound.configure_sounddevice(
output=self.SOFT_SOUND, samplerate=self.SOUND_SAMPLE_FREQ)
# Create sounds and output actions of state machine
self.GO_TONE = None
self.WHITE_NOISE = None
self = sound.init_sounds(self) # sets GO_TONE and WHITE_NOISE
# SoundCard config params
self.SOUND_BOARD_BPOD_PORT = "Serial3"
self.GO_TONE_IDX = 2
self.WHITE_NOISE_IDX = 3
if self.SOFT_SOUND is None:
sound.configure_sound_card(
sounds=[self.GO_TONE, self.WHITE_NOISE],
indexes=[self.GO_TONE_IDX, self.WHITE_NOISE_IDX],
sample_rate=self.SOUND_SAMPLE_FREQ,
)
self.OUT_TONE = ("SoftCode", 1) if self.SOFT_SOUND else ("Serial3", 6)
self.OUT_NOISE = ("SoftCode", 2) if self.SOFT_SOUND else ("Serial3", 7)
self.OUT_STOP_SOUND = (("SoftCode", 0) if self.SOFT_SOUND else
("Serial3", ord("X")))
# =====================================================================
# SAVE SETTINGS FILE AND TASK CODE
# =====================================================================
if not self.DEBUG:
iotasks.save_session_settings(self)
iotasks.copy_task_code(self)
iotasks.save_task_code(self)
if "ephys" not in self.PYBPOD_BOARD:
iotasks.copy_video_code(self)
iotasks.save_video_code(self)
self.bpod_lights(0)
self.display_logs()
