def fetchAndParseIndexFile(options, isSouth, baseCurlCmd, outputFolder):
'''Create a list of all files that must be fetched unless done already.'''
# For AN 20091112, etc, some of the ortho images are stored at the
# beginning of the next day's flight. Need to sort this out, and
# it is tricky. More comments within the code.
fetchNextDay = True
separateByLat = (options.type == 'ortho'
and isInSeparateByLatTable(options.yyyymmdd))
if separateByLat:
# Here we won't fetch the next day, we will just separate by latitude within
# a given day
fetchNextDay = False
orthoOrFireball = ((options.type == 'ortho')
or (options.type == 'fireball'))
if fetchNextDay:
# Normally we fetch for next day only for ortho or fireball. However,
# for one single special flight, we do it for jpeg too, as then
# the jpegs are also split.
if orthoOrFireball or \
((options.type == 'jpeg') and twoFlightsInOneDay(options.site, options.yyyymmdd)):
fetchNextDay = True
else:
fetchNextDay = False
# If we need to parse the next flight day as well, as expected in some runs,
# we will fetch two html files, but create a single index out of them.
dayVals = [0]
if fetchNextDay:
dayVals.append(1)
indexPath = icebridge_common.htmlIndexFile(outputFolder)
currIndexPath = indexPath
parsedIndexPath = icebridge_common.csvIndexFile(outputFolder)
if options.refetchIndex:
os.system('rm -f ' + indexPath)
os.system('rm -f ' + parsedIndexPath)
if icebridge_common.fileNonEmpty(parsedIndexPath):
logger.info('Already have the index file ' + parsedIndexPath +
', keeping it.')
return parsedIndexPath
frameDict = {}
urlDict = {}
# We need the list of jpeg frames. Sometimes when fetching ortho images,
# and we have to fetch from the next day, don't fetch unless
# in the jpeg index.
if len(dayVals) > 1 and options.type != 'jpeg':
jpegFolder = icebridge_common.getJpegFolder(
os.path.dirname(outputFolder))
jpegIndexPath = icebridge_common.csvIndexFile(jpegFolder)
(jpegFrameDict,
jpegUrlDict) = icebridge_common.readIndexFile(jpegIndexPath)
orthoStamp = {}
if options.type == 'fireball':
# This is a bugfix. Ensure that the fireball DEM has not just
# the same frame number, but also same timestamp as the ortho.
orthoFolder = icebridge_common.getOrthoFolder(
os.path.dirname(outputFolder))
orthoIndexPath = icebridge_common.csvIndexFile(orthoFolder)
(orthoFrameDict,
orthoUrlDict) = icebridge_common.readIndexFile(orthoIndexPath)
for frame in sorted(orthoFrameDict.keys()):
filename = orthoFrameDict[frame]
[imageDateString,
imageTimeString] = icebridge_common.parseTimeStamps(filename)
orthoStamp[frame] = imageTimeString
for dayVal in dayVals:
if len(dayVals) > 1:
currIndexPath = indexPath + '.day' + str(dayVal)
if options.refetchIndex:
os.system('rm -f ' + currIndexPath)
# Find folderUrl which contains all of the files
if options.type in LIDAR_TYPES:
options.allFrames = True # For lidar, always get all the frames!
# For lidar, the data can come from one of three sources.
# Unfortunately sometimes there is more than one source, and then
# we need to pick by latitude.
folderUrls = []
lidar_types = []
for lidar in LIDAR_TYPES:
folderUrl = getFolderUrl(
options.yyyymmdd,
options.year,
options.month,
options.day,
dayVal, # note here the dayVal
options.site,
lidar)
logger.info('Checking lidar URL: ' + folderUrl)
if checkIfUrlExists(folderUrl):
logger.info('Found match with lidar type: ' + lidar)
folderUrls.append(folderUrl)
lidar_types.append(lidar)
if len(folderUrls) == 0:
logger.info(
'WARNING: Could not find any lidar data for the given date!'
)
elif len(folderUrls) == 1:
# Unique solution
folderUrl = folderUrls[0]
options.type = lidar_types[0]
elif len(folderUrls) >= 2:
# Multiple solutions. Pick the good one by latitude.
logger.info("Multiples URLs to search: " +
" ".join(folderUrls))
count = -1
isGood = False
for folderUrl in folderUrls:
count += 1
(localFrameDict, localUrlDict) = \
fetchAndParseIndexFileAux(isSouth,
separateByLat, dayVal,
baseCurlCmd, folderUrl,
currIndexPath,
lidar_types[count])
for frame in sorted(localFrameDict.keys()):
filename = localFrameDict[frame]
xmlFile = icebridge_common.xmlFile(filename)
url = os.path.join(folderUrl, xmlFile)
# Download the file
curlCmd = baseCurlCmd + ' ' + url + ' > ' + xmlFile
logger.info(curlCmd)
p = subprocess.Popen(curlCmd, shell=True)
os.waitpid(p.pid, 0)
latitude = icebridge_common.parseLatitude(xmlFile)
if os.path.exists(xmlFile): os.remove(xmlFile)
if hasGoodLat(latitude, isSouth):
isGood = True
options.type = lidar_types[count]
logger.info("Good latitude " + str(latitude) +
", will use " + folderUrl +
" of type " + lidar_types[count])
else:
logger.info("Bad latitude " + str(latitude) +
", will not use " + folderUrl +
" of type " + lidar_types[count])
# Stop at first file no matter what
break
if isGood:
break
if not isGood:
if options.type in LIDAR_TYPES and options.ignoreMissingLidar:
logger.info("No lidar. None of these URLs are good: " +
" ".join(folderUrls))
else:
raise Exception("None of these URLs are good: " +
" ".join(folderUrls))
else: # Other cases are simpler
folderUrl = getFolderUrl(
options.yyyymmdd,
options.year,
options.month,
options.day,
dayVal, # note here the dayVal
options.site,
options.type)
logger.info('Fetching from URL: ' + folderUrl)
(localFrameDict, localUrlDict) = \
fetchAndParseIndexFileAux(isSouth,
separateByLat, dayVal,
baseCurlCmd, folderUrl,
currIndexPath, options.type)
# Append to the main index
for frame in sorted(localFrameDict.keys()):
if options.type == 'fireball':
# This is a bugfix. Ensure that the fireball DEM has not just
# the same frame number, but also same timestamp as the ortho.
# Otherwise we may accidentally getting one from next day.
[imageDateString, imageTimeString] = \
icebridge_common.parseTimeStamps(localFrameDict[frame])
if frame not in orthoStamp:
#logger.info("Missing ortho for fireball: " + localFrameDict[frame])
continue
if abs(int(imageTimeString) - int(orthoStamp[frame])) > 1000:
# Apparently a tolerance is needed. Use 10 seconds, so the number 1000.
#logger.info("Will not use fireball DEM whose timestamp differs from ortho.")
#logger.info("Fireball is: " + localFrameDict[frame])
#logger.info("Ortho is: " + orthoFrameDict[frame])
continue
# Fetch from next day, unless already have a value. And don't fetch
# frames not in the jpeg index.
if len(dayVals) > 1 and options.type != 'jpeg':
if not frame in jpegFrameDict.keys(): continue
if frame in frameDict.keys(): continue
frameDict[frame] = localFrameDict[frame]
urlDict[frame] = localUrlDict[frame]
# Write the combined index file
icebridge_common.writeIndexFile(parsedIndexPath, frameDict, urlDict)
return parsedIndexPath
def pairLidarFiles(lidarFolder, skipValidate, logger):
'''For each pair of lidar files generate a double size point cloud.
We can use these later since they do not have any gaps between adjacent files.'''
logger.info('Generating lidar pairs...')
# Create the output folder
pairedFolder = icebridge_common.getPairedLidarFolder(lidarFolder)
os.system('mkdir -p ' + pairedFolder)
convLidarFile = icebridge_common.getConvertedLidarIndexFile(lidarFolder)
if not os.path.exists(convLidarFile):
raise Exception("Missing file: " + convLidarFile)
(lidarDict, dummyUrlDict) = icebridge_common.readIndexFile(convLidarFile)
lidarExt = ''
for frame in lidarDict:
lidarExt = icebridge_common.fileExtension(lidarDict[frame])
numLidarFiles = len(lidarDict.keys())
pairedDict = {}
# Loop through all pairs of csv files in the folder
badFiles = False
lidarKeys = sorted(lidarDict.keys())
for i in range(len(lidarKeys) - 1):
thisFile = lidarDict[lidarKeys[i]]
nextFile = lidarDict[lidarKeys[i + 1]]
date2, time2 = icebridge_common.parseTimeStamps(nextFile)
# Record the name with the second file
# - More useful because the time for the second file represents the middle of the file.
outputName = icebridge_common.lidar_pair_prefix(
) + date2 + '_' + time2 + lidarExt
pairedDict[lidarKeys[i]] = outputName
# Handle paths
path1 = os.path.join(lidarFolder, thisFile)
path2 = os.path.join(lidarFolder, nextFile)
outputPath = os.path.join(pairedFolder, outputName)
if not os.path.exists(path1) or not os.path.exists(path2):
logger.info("Cannot create " + outputPath +
" as we are missing its inputs")
# If the inputs are missing, but the output is there, most likely it is corrupt.
# Wipe it. Hopefully a subsequent fetch and convert step will bring it back.
if os.path.exists(outputPath):
logger.info("Wiping: " + outputPath)
os.system('rm -f ' + outputPath) # will not throw
badFiles = True
continue
# Skip existing valid files
if skipValidate:
if os.path.exists(outputPath):
logger.info("File exists, skipping: " + outputPath)
continue
else:
if icebridge_common.isValidLidarCSV(outputPath):
#logger.info("File exists and is valid, skipping: " + outputPath)
continue
# Concatenate the two files
cmd1 = 'cat ' + path1 + ' > ' + outputPath
cmd2 = 'tail -n +2 -q ' + path2 + ' >> ' + outputPath
logger.info(cmd1)
p = subprocess.Popen(cmd1, stdout=subprocess.PIPE, shell=True)
out, err = p.communicate()
logger.info(cmd2)
p = subprocess.Popen(cmd2, stdout=subprocess.PIPE, shell=True)
out, err = p.communicate()
if not icebridge_common.isValidLidarCSV(outputPath):
logger.error('Failed to generate merged LIDAR file, will wipe: ' +
outputPath)
os.system('rm -f ' + outputPath) # will not throw
badFiles = True
pairedLidarFile = icebridge_common.getPairedIndexFile(pairedFolder)
willWritePairedFile = False
if not os.path.exists(pairedLidarFile):
willWritePairedFile = True
else:
# Bugfix: Sometimes the written converted file has the wrong size, maybe
# something got interrupted earlier.
(lidarDictIn,
dummyUrlDict) = icebridge_common.readIndexFile(pairedLidarFile)
if lidarDictIn != pairedDict:
willWritePairedFile = True
if willWritePairedFile:
logger.info("Writing: " + pairedLidarFile)
icebridge_common.writeIndexFile(pairedLidarFile, pairedDict, {})
return (not badFiles)
def convertLidarDataToCsv(lidarFolder, startFrame, stopFrame, skipValidate,
logger):
'''Make sure all lidar data is available in a readable text format.
Returns false if any files failed to convert.'''
logger.info('Converting LIDAR files...')
lidarIndexPath = icebridge_common.csvIndexFile(lidarFolder)
(frameDict, urlDict) = icebridge_common.readIndexFile(lidarIndexPath)
if not skipValidate:
validFilesList = icebridge_common.validFilesList(
os.path.dirname(lidarFolder), startFrame, stopFrame)
validFilesSet = set()
validFilesSet = icebridge_common.updateValidFilesListFromDisk(
validFilesList, validFilesSet)
numInitialValidFiles = len(validFilesSet)
convDict = {}
# Loop through all files in the folder
badFiles = False
for frame in sorted(frameDict.keys()):
f = frameDict[frame]
extension = icebridge_common.fileExtension(f)
# Only interested in a few file types
if (extension != '.qi') and (extension != '.hdf5') and (extension !=
'.h5'):
convDict[frame] = f # these are already in plain text
continue
convDict[frame] = os.path.splitext(f)[0] + '.csv'
outputPath = os.path.join(lidarFolder, convDict[frame])
# Handle paths
fullPath = os.path.join(lidarFolder, f)
if not os.path.exists(fullPath):
logger.info("Cannot convert missing file: " + fullPath)
continue
# If the input is invalid, wipe both it, its xml, and the output
# Hopefully there will be a subsquent fetch step where it will get
# refetched.
if not icebridge_common.hasValidChkSum(fullPath, logger):
logger.info("Will wipe invalid file: " + fullPath)
xmlFile = icebridge_common.xmlFile(fullPath)
os.system('rm -f ' + fullPath) # will not throw
os.system('rm -f ' + xmlFile) # will not throw
os.system('rm -f ' + outputPath) # will not throw
badFiles = True
continue
# Skip existing valid files
if skipValidate:
if os.path.exists(outputPath):
logger.info("File exists, skipping: " + outputPath)
continue
else:
if outputPath in validFilesSet and os.path.exists(outputPath):
#logger.info('Previously validated: ' + outputPath) # verbose
continue
if icebridge_common.isValidLidarCSV(outputPath):
#logger.info("File exists and is valid, skipping: " + outputPath)
continue
# Call the conversion
logger.info("Process " + fullPath)
extract_icebridge_ATM_points.main([fullPath])
# Check the result
if not icebridge_common.isValidLidarCSV(outputPath):
logger.error('Failed to parse LIDAR file, will wipe: ' +
outputPath)
os.system('rm -f ' + outputPath) # will not throw
badFiles = True
else:
if not skipValidate:
validFilesSet.add(outputPath) # mark it as validated
convLidarFile = icebridge_common.getConvertedLidarIndexFile(lidarFolder)
willWriteConvFile = False
if not os.path.exists(convLidarFile):
willWriteConvFile = True
else:
# Bugfix: Sometimes the written converted file has the wrong size, maybe
# something got interrupted earlier.
(lidarDictIn,
dummyUrlDict) = icebridge_common.readIndexFile(convLidarFile)
if lidarDictIn != convDict:
willWriteConvFile = True
if willWriteConvFile:
logger.info("Writing: " + convLidarFile)
icebridge_common.writeIndexFile(convLidarFile, convDict, {})
if not skipValidate:
# Write to disk the list of validated files, but only if new
# validations happened. First re-read that list, in case a
# different process modified it in the meantime, such as if two
# managers are running at the same time.
numFinalValidFiles = len(validFilesSet)
if numInitialValidFiles != numFinalValidFiles:
validFilesSet = icebridge_common.updateValidFilesListFromDisk(
validFilesList, validFilesSet)
icebridge_common.writeValidFilesList(validFilesList, validFilesSet)
return (not badFiles)
def fetchAndParseIndexFile(options, isSouth, baseCurlCmd, outputFolder):
'''Create a list of all files that must be fetched unless done already.'''
# For AN 20091112, etc, some of the ortho images are stored at the
# beginning of the next day's flight. Need to sort this out, and
# it is tricky. More comments within the code.
fetchNextDay = True
separateByLat = (options.type == 'ortho' and isInSeparateByLatTable(options.yyyymmdd))
if separateByLat:
# Here we won't fetch the next day, we will just separate by latitude within
# a given day
fetchNextDay = False
orthoOrFireball = ( (options.type == 'ortho') or (options.type == 'fireball') )
if fetchNextDay:
# Normally we fetch for next day only for ortho or fireball. However,
# for one single special flight, we do it for jpeg too, as then
# the jpegs are also split.
if orthoOrFireball or \
((options.type == 'jpeg') and twoFlightsInOneDay(options.site, options.yyyymmdd)):
fetchNextDay = True
else:
fetchNextDay = False
# If we need to parse the next flight day as well, as expected in some runs,
# we will fetch two html files, but create a single index out of them.
dayVals = [0]
if fetchNextDay:
dayVals.append(1)
indexPath = icebridge_common.htmlIndexFile(outputFolder)
currIndexPath = indexPath
parsedIndexPath = icebridge_common.csvIndexFile(outputFolder)
if options.refetchIndex:
os.system('rm -f ' + indexPath)
os.system('rm -f ' + parsedIndexPath)
if icebridge_common.fileNonEmpty(parsedIndexPath):
logger.info('Already have the index file ' + parsedIndexPath + ', keeping it.')
return parsedIndexPath
frameDict = {}
urlDict = {}
# We need the list of jpeg frames. Sometimes when fetching ortho images,
# and we have to fetch from the next day, don't fetch unless
# in the jpeg index.
if len(dayVals) > 1 and options.type != 'jpeg':
jpegFolder = icebridge_common.getJpegFolder(os.path.dirname(outputFolder))
jpegIndexPath = icebridge_common.csvIndexFile(jpegFolder)
(jpegFrameDict, jpegUrlDict) = icebridge_common.readIndexFile(jpegIndexPath)
orthoStamp = {}
if options.type == 'fireball':
# This is a bugfix. Ensure that the fireball DEM has not just
# the same frame number, but also same timestamp as the ortho.
orthoFolder = icebridge_common.getOrthoFolder(os.path.dirname(outputFolder))
orthoIndexPath = icebridge_common.csvIndexFile(orthoFolder)
(orthoFrameDict, orthoUrlDict) = icebridge_common.readIndexFile(orthoIndexPath)
for frame in sorted(orthoFrameDict.keys()):
filename = orthoFrameDict[frame]
[imageDateString, imageTimeString] = icebridge_common.parseTimeStamps(filename)
orthoStamp[frame] = imageTimeString
for dayVal in dayVals:
if len(dayVals) > 1:
currIndexPath = indexPath + '.day' + str(dayVal)
if options.refetchIndex:
os.system('rm -f ' + currIndexPath)
# Find folderUrl which contains all of the files
if options.type in LIDAR_TYPES:
options.allFrames = True # For lidar, always get all the frames!
# For lidar, the data can come from one of three sources.
# Unfortunately sometimes there is more than one source, and then
# we need to pick by latitude.
folderUrls = []
lidar_types = []
for lidar in LIDAR_TYPES:
folderUrl = getFolderUrl(options.yyyymmdd, options.year, options.month,
options.day, dayVal, # note here the dayVal
options.site, lidar)
logger.info('Checking lidar URL: ' + folderUrl)
if checkIfUrlExists(folderUrl, baseCurlCmd):
logger.info('Found match with lidar type: ' + lidar)
folderUrls.append(folderUrl)
lidar_types.append(lidar)
if len(folderUrls) == 0:
logger.info('WARNING: Could not find any lidar data for the given date!')
elif len(folderUrls) == 1:
# Unique solution
folderUrl = folderUrls[0]
options.type = lidar_types[0]
elif len(folderUrls) >= 2:
# Multiple solutions. Pick the good one by latitude.
logger.info("Multiples URLs to search: " + " ".join(folderUrls))
count = -1
isGood = False
for folderUrl in folderUrls:
count += 1
(localFrameDict, localUrlDict) = \
fetchAndParseIndexFileAux(isSouth,
separateByLat, dayVal,
baseCurlCmd, folderUrl,
currIndexPath,
lidar_types[count])
for frame in sorted(localFrameDict.keys()):
filename = localFrameDict[frame]
xmlFile = icebridge_common.xmlFile(filename)
url = os.path.join(folderUrl, xmlFile)
# Download the file
curlCmd = baseCurlCmd + ' ' + url + ' > ' + xmlFile
logger.info(curlCmd)
p = subprocess.Popen(curlCmd, shell=True, universal_newlines=True)
os.waitpid(p.pid, 0)
latitude = icebridge_common.parseLatitude(xmlFile)
if os.path.exists(xmlFile): os.remove(xmlFile)
if hasGoodLat(latitude, isSouth):
isGood = True
options.type = lidar_types[count]
logger.info("Good latitude " + str(latitude) + ", will use " +
folderUrl + " of type " + lidar_types[count])
else:
logger.info("Bad latitude " + str(latitude) + ", will not use " +
folderUrl + " of type " + lidar_types[count])
# Stop at first file no matter what
break
if isGood:
break
if not isGood:
if options.type in LIDAR_TYPES and options.ignoreMissingLidar:
logger.info("No lidar. None of these URLs are good: " +
" ".join(folderUrls))
else:
raise Exception("None of these URLs are good: " +
" ".join(folderUrls))
else: # Other cases are simpler
folderUrl = getFolderUrl(options.yyyymmdd, options.year, options.month,
options.day, dayVal, # note here the dayVal
options.site, options.type)
logger.info('Fetching from URL: ' + folderUrl)
(localFrameDict, localUrlDict) = \
fetchAndParseIndexFileAux(isSouth,
separateByLat, dayVal,
baseCurlCmd, folderUrl,
currIndexPath, options.type)
# Append to the main index
for frame in sorted(localFrameDict.keys()):
if options.type == 'fireball':
# This is a bugfix. Ensure that the fireball DEM has not just
# the same frame number, but also same timestamp as the ortho.
# Otherwise we may accidentally getting one from next day.
[imageDateString, imageTimeString] = \
icebridge_common.parseTimeStamps(localFrameDict[frame])
if frame not in orthoStamp:
#logger.info("Missing ortho for fireball: " + localFrameDict[frame])
continue
if abs(int(imageTimeString) - int(orthoStamp[frame])) > 1000:
# Apparently a tolerance is needed. Use 10 seconds, so the number 1000.
#logger.info("Will not use fireball DEM whose timestamp differs from ortho.")
#logger.info("Fireball is: " + localFrameDict[frame])
#logger.info("Ortho is: " + orthoFrameDict[frame])
continue
# Fetch from next day, unless already have a value. And don't fetch
# frames not in the jpeg index.
if len(dayVals) > 1 and options.type != 'jpeg':
if not frame in jpegFrameDict.keys(): continue
if frame in frameDict.keys(): continue
frameDict[frame] = localFrameDict[frame]
urlDict[frame] = localUrlDict[frame]
# Write the combined index file
icebridge_common.writeIndexFile(parsedIndexPath, frameDict, urlDict)
return parsedIndexPath
def pairLidarFiles(lidarFolder, skipValidate, logger):
'''For each pair of lidar files generate a double size point cloud.
We can use these later since they do not have any gaps between adjacent files.'''
logger.info('Generating lidar pairs...')
# Create the output folder
pairedFolder = icebridge_common.getPairedLidarFolder(lidarFolder)
os.system('mkdir -p ' + pairedFolder)
convLidarFile = icebridge_common.getConvertedLidarIndexFile(lidarFolder)
if not os.path.exists(convLidarFile):
raise Exception("Missing file: " + convLidarFile)
(lidarDict, dummyUrlDict) = icebridge_common.readIndexFile(convLidarFile)
lidarExt = ''
for frame in lidarDict:
lidarExt = icebridge_common.fileExtension(lidarDict[frame])
numLidarFiles = len(lidarDict.keys())
pairedDict = {}
# Loop through all pairs of csv files in the folder
badFiles = False
lidarKeys = sorted(lidarDict.keys())
for i in range(len(lidarKeys)-1):
thisFile = lidarDict[lidarKeys[i ]]
nextFile = lidarDict[lidarKeys[i+1]]
date2, time2 = icebridge_common.parseTimeStamps(nextFile)
# Record the name with the second file
# - More useful because the time for the second file represents the middle of the file.
outputName = icebridge_common.lidar_pair_prefix() + date2 +'_'+ time2 + lidarExt
pairedDict[lidarKeys[i]] = outputName
# Handle paths
path1 = os.path.join(lidarFolder, thisFile)
path2 = os.path.join(lidarFolder, nextFile)
outputPath = os.path.join(pairedFolder, outputName)
if not os.path.exists(path1) or not os.path.exists(path2):
logger.info("Cannot create " + outputPath + " as we are missing its inputs")
# If the inputs are missing, but the output is there, most likely it is corrupt.
# Wipe it. Hopefully a subsequent fetch and convert step will bring it back.
if os.path.exists(outputPath):
logger.info("Wiping: " + outputPath)
os.system('rm -f ' + outputPath) # will not throw
badFiles = True
continue
# Skip existing valid files
if skipValidate:
if os.path.exists(outputPath):
logger.info("File exists, skipping: " + outputPath)
continue
else:
if icebridge_common.isValidLidarCSV(outputPath):
#logger.info("File exists and is valid, skipping: " + outputPath)
continue
# Concatenate the two files
cmd1 = 'cat ' + path1 + ' > ' + outputPath
cmd2 = 'tail -n +2 -q ' + path2 + ' >> ' + outputPath
logger.info(cmd1)
p = subprocess.Popen(cmd1, stdout=subprocess.PIPE, shell=True,
universal_newlines=True)
out, err = p.communicate()
logger.info(cmd2)
p = subprocess.Popen(cmd2, stdout=subprocess.PIPE, shell=True,
universal_newlines=True)
out, err = p.communicate()
if not icebridge_common.isValidLidarCSV(outputPath):
logger.error('Failed to generate merged LIDAR file, will wipe: ' + outputPath)
os.system('rm -f ' + outputPath) # will not throw
badFiles = True
pairedLidarFile = icebridge_common.getPairedIndexFile(pairedFolder)
willWritePairedFile = False
if not os.path.exists(pairedLidarFile):
willWritePairedFile = True
else:
# Bugfix: Sometimes the written converted file has the wrong size, maybe
# something got interrupted earlier.
(lidarDictIn, dummyUrlDict) = icebridge_common.readIndexFile(pairedLidarFile)
if lidarDictIn != pairedDict:
willWritePairedFile = True
if willWritePairedFile:
logger.info("Writing: " + pairedLidarFile)
icebridge_common.writeIndexFile(pairedLidarFile, pairedDict, {})
return (not badFiles)
def convertLidarDataToCsv(lidarFolder, startFrame, stopFrame,
skipValidate, logger):
'''Make sure all lidar data is available in a readable text format.
Returns false if any files failed to convert.'''
logger.info('Converting LIDAR files...')
lidarIndexPath = icebridge_common.csvIndexFile(lidarFolder)
(frameDict, urlDict) = icebridge_common.readIndexFile(lidarIndexPath)
if not skipValidate:
validFilesList = icebridge_common.validFilesList(os.path.dirname(lidarFolder),
startFrame, stopFrame)
validFilesSet = set()
validFilesSet = icebridge_common.updateValidFilesListFromDisk(validFilesList, validFilesSet)
numInitialValidFiles = len(validFilesSet)
convDict = {}
# Loop through all files in the folder
badFiles = False
for frame in sorted(frameDict.keys()):
f = frameDict[frame]
extension = icebridge_common.fileExtension(f)
# Only interested in a few file types
if (extension != '.qi') and (extension != '.hdf5') and (extension != '.h5'):
convDict[frame] = f # these are already in plain text
continue
convDict[frame] = os.path.splitext(f)[0] + '.csv'
outputPath = os.path.join(lidarFolder, convDict[frame])
# Handle paths
fullPath = os.path.join(lidarFolder, f)
if not os.path.exists(fullPath):
logger.info("Cannot convert missing file: " + fullPath)
continue
# If the input is invalid, wipe both it, its xml, and the output
# Hopefully there will be a subsquent fetch step where it will get
# refetched.
if not icebridge_common.hasValidChkSum(fullPath, logger):
logger.info("Will wipe invalid file: " + fullPath)
xmlFile = icebridge_common.xmlFile(fullPath)
os.system('rm -f ' + fullPath) # will not throw
os.system('rm -f ' + xmlFile) # will not throw
os.system('rm -f ' + outputPath) # will not throw
badFiles = True
continue
# Skip existing valid files
if skipValidate:
if os.path.exists(outputPath):
logger.info("File exists, skipping: " + outputPath)
continue
else:
if outputPath in validFilesSet and os.path.exists(outputPath):
#logger.info('Previously validated: ' + outputPath) # verbose
continue
if icebridge_common.isValidLidarCSV(outputPath):
#logger.info("File exists and is valid, skipping: " + outputPath)
continue
# Call the conversion
logger.info("Process " + fullPath)
extract_icebridge_ATM_points.main([fullPath])
# Check the result
if not icebridge_common.isValidLidarCSV(outputPath):
logger.error('Failed to parse LIDAR file, will wipe: ' + outputPath)
os.system('rm -f ' + outputPath) # will not throw
badFiles = True
else:
if not skipValidate:
validFilesSet.add(outputPath) # mark it as validated
convLidarFile = icebridge_common.getConvertedLidarIndexFile(lidarFolder)
willWriteConvFile = False
if not os.path.exists(convLidarFile):
willWriteConvFile = True
else:
# Bugfix: Sometimes the written converted file has the wrong size, maybe
# something got interrupted earlier.
(lidarDictIn, dummyUrlDict) = icebridge_common.readIndexFile(convLidarFile)
if lidarDictIn != convDict:
willWriteConvFile = True
if willWriteConvFile:
logger.info("Writing: " + convLidarFile)
icebridge_common.writeIndexFile(convLidarFile, convDict, {})
if not skipValidate:
# Write to disk the list of validated files, but only if new
# validations happened. First re-read that list, in case a
# different process modified it in the meantime, such as if two
# managers are running at the same time.
numFinalValidFiles = len(validFilesSet)
if numInitialValidFiles != numFinalValidFiles:
validFilesSet = icebridge_common.updateValidFilesListFromDisk(validFilesList,
validFilesSet)
icebridge_common.writeValidFilesList(validFilesList, validFilesSet)
return (not badFiles)