def test_award_affil(self):
query = self.spaql_templates.award_affiliations()
res = list(self.graph.query(query))
out = {}
for award, affil in res:
award = self.nsm._qhrm(award)
if isinstance(affil, rdflib.URIRef):
ror = idlib.Ror(affil)
affil = f'{ror.identifier.curie} ({ror.label})'
else:
continue # skip these for now
affil = affil.toPython()
if award not in out:
out[award] = []
out[award].append(affil)
for k, vs in sorted(out.items()):
vs.sort()
print(k)
[print('\t', v) for v in vs]
print('unique awards:', len(out))
print('unique affils:',
len(set([v for vs in out.values() for v in vs])))
self.pp(res, unpack=False)
assert len(res) > 0
def affiliation(self, value):
#_, s = self.c.affiliation(value)
try:
if isinstance(value, str): # FIXME json conv
yield from idlib.Ror(value).triples_gen
else:
yield from value.triples_gen
except idlib.exc.RemoteError as e:
# FIXME sigh, temp until we can split out the
# remote data resolution phase from the rest
loge.exception(e)
def __new__(cls, something):
if '10.' in something:
if 'http' in something and 'doi.org' not in something:
pass # probably a publisher uri that uses the handle
else:
return idlib.Doi(something)
if 'orcid' in something:
return idlib.Orcid(something)
if '/ror.org/' in something or something.startswith('ror:'):
return idlib.Ror(something)
if 'protocols.io' in something:
return idlib.Pio(something)
return oq.OntId(something)
return OntTerm(something) # use the better local version of OntTerm
def affiliation(self, value):
#_, s = self.c.affiliation(value)
if isinstance(value, str): # FIXME json conv
yield from idlib.Ror(value).triples_gen
else:
yield from value.triples_gen
def mapping(self):
return {a:idlib.Ror(r) if r else None
for a, r in zip(self.byCol.affiliation_string,
self.byCol.ror_id)}
def test_asType(self):
import rdflib
from idlib.formats import rdf as _bind_rdf
r = idlib.Ror(self.ids[0])
nt = r.asType(rdflib.URIRef)
assert str(r) != str(nt), 'string representation of streams should not match id'
def test_triples(self):
from idlib.formats import rdf as _bind_rdf
r = idlib.Ror(self.ids[0])
trips = list(r.triples_gen)
def ror_id(row):
r = row.ror_id().value
return idlib.Ror(r) if r else None