def setUp(self):
self.mockInput = {
"Standard Object Features": {
"Coord<Principal<Kurtosis>>": {},
"Coord<Principal<Skewness>>": {},
"Count": {},
"Kurtosis": {},
"Maximum": {},
"Mean": {},
"Minimum": {},
"Quantiles": {
"something": 123456
},
"RegionCenter": {},
"RegionRadii": {},
"Skewness": {},
"Sum": {},
"Variance": {},
}
}
self.legacyMockInput = {"0": deepcopy(self.mockInput)}
self.operator = OpMock(graph=Graph())
self.objFeaturesNameSlot = self.operator.OpaqueListSlot
self.serializer = SerialObjectFeatureNamesSlot(
self.objFeaturesNameSlot)
self.testFilePath = os.path.join(tempfile.gettempdir(),
"objFeatureNames.h5")
def __init__(self, operator, projectFileGroupName):
slots = [
SerialBlockSlot(
operator.LabelImage,
operator.LabelImageCacheInput,
operator.CleanLabelBlocks,
name="LabelImage_v2",
subname="labelimage{:03d}",
selfdepends=False,
shrink_to_bb=False,
compression_level=1,
),
SerialObjectFeatureNamesSlot(operator.FeatureNamesVigra),
SerialObjectFeatureNamesSlot(operator.FeatureNamesDivision),
SerialObjectFeaturesSlot(
operator.BlockwiseRegionFeaturesVigra,
operator.RegionFeaturesCacheInputVigra,
operator.RegionFeaturesCleanBlocksVigra,
name="RegionFeaturesVigra",
),
SerialObjectFeaturesSlot(
operator.BlockwiseRegionFeaturesDivision,
operator.RegionFeaturesCacheInputDivision,
operator.RegionFeaturesCleanBlocksDivision,
name="RegionFeaturesDivision",
),
]
super(TrackingFeatureExtractionSerializer, self).__init__(projectFileGroupName, slots=slots)
class TestSerialObjectFeatureNamesSlot(unittest.TestCase):
def setUp(self):
self.mockInput = {
"Standard Object Features": {
"Coord<Principal<Kurtosis>>": {},
"Coord<Principal<Skewness>>": {},
"Count": {},
"Kurtosis": {},
"Maximum": {},
"Mean": {},
"Minimum": {},
"Quantiles": {
"something": 123456
},
"RegionCenter": {},
"RegionRadii": {},
"Skewness": {},
"Sum": {},
"Variance": {},
}
}
self.legacyMockInput = {"0": deepcopy(self.mockInput)}
self.operator = OpMock(graph=Graph())
self.objFeaturesNameSlot = self.operator.OpaqueListSlot
self.serializer = SerialObjectFeatureNamesSlot(
self.objFeaturesNameSlot)
self.testFilePath = os.path.join(tempfile.gettempdir(),
"objFeatureNames.h5")
def testSerialization(self):
for inp in (self.mockInput, self.legacyMockInput):
h5file = h5py.File(self.testFilePath, "w")
h5group = h5file.create_group("Some Group")
self.objFeaturesNameSlot.setValue(deepcopy(inp))
self.assertEqual(self.objFeaturesNameSlot([]).wait(), inp)
self.serializer.serialize(h5group)
self.objFeaturesNameSlot.setValue({"something": "else"})
self.assertNotEqual(self.objFeaturesNameSlot([]).wait(), inp)
self.serializer.deserialize(h5group)
self.assertEqual(
self.objFeaturesNameSlot([]).wait(), self.mockInput)
h5file.close()
def __init__(self, operator, projectFileGroupName):
slots = [
SerialBlockSlot(operator.LabelImage,
operator.LabelImageCacheInput,
operator.CleanLabelBlocks,
name='LabelImage_v2',
subname='labelimage{:03d}',
selfdepends=False,
shrink_to_bb=False,
compression_level=1),
SerialObjectFeatureNamesSlot(operator.Features),
SerialObjectFeaturesSlot(operator.BlockwiseRegionFeatures,
operator.RegionFeaturesCacheInput,
operator.RegionFeaturesCleanBlocks,
name="RegionFeatures"),
]
super(ObjectExtractionSerializer, self).__init__(projectFileGroupName,
slots=slots)
