def parse_fasta_mhc_dirs(
dirs,
min_length=0,
exclude_allele_substrings=None,
require_allele_substrings=None):
paths = []
for d in dirs:
paths.extend(
find_paths(
directory_string = d,
extensions = [".fa", ".fasta"]))
return parse_fasta_mhc_files(
paths,
min_length=min_length,
exclude_allele_substrings=exclude_allele_substrings,
require_allele_substrings=require_allele_substrings)
def test_find_paths_wrong_dir():
curr_dir = split(__file__)[0]
wrong_dir = curr_dir + "_NONSENSE_!!!!!"
test_files = find_paths(directory_string = wrong_dir)
def test_find_paths():
curr_dir = split(__file__)[0]
test_files = find_paths(directory_string = curr_dir, extensions = [".py"])
assert len(test_files) > 0