示例#1
0
def parse_fasta_mhc_dirs(
        dirs,
        min_length=0,
        exclude_allele_substrings=None,
        require_allele_substrings=None):
    paths = []
    for d in dirs:
        paths.extend(
            find_paths(
                directory_string = d,
                extensions = [".fa", ".fasta"]))
    return parse_fasta_mhc_files(
            paths,
            min_length=min_length,
            exclude_allele_substrings=exclude_allele_substrings,
            require_allele_substrings=require_allele_substrings)
示例#2
0
def test_find_paths_wrong_dir():
    curr_dir = split(__file__)[0]
    wrong_dir = curr_dir + "_NONSENSE_!!!!!"
    test_files = find_paths(directory_string = wrong_dir)
示例#3
0
def test_find_paths():
    curr_dir = split(__file__)[0]
    test_files = find_paths(directory_string = curr_dir, extensions = [".py"])
    assert len(test_files) > 0