def run(self):
sample = pickle.load( gzip.open(self.samplefile, "rb") )
if self.options.uniq:
subsample = iseqlib.samplingSample_weightedUniq(sample, self.size)
#subsample = iseqlib.samplingSample_uniq(sample, self.size)
else:
subsample = iseqlib.samplingSample(sample, self.size)
#filtering if selected Vs and/or selected Js were specified
subsample = iseqlib.filterSampleByGenes(subsample, self.options.vs, self.options.js)
pickle.dump(subsample, gzip.open(self.outfile, "wb"))
def run(self):
globalTempDir = self.getGlobalTempDir()
#sampling
sample = pickle.load( gzip.open(self.samplefile, "rb") )
if self.options.uniq:
subsample = iseqlib.samplingSample_weightedUniq(sample, size)
else:
subsample = iseqlib.samplingSample(sample, self.size)
#filtering if selected Vs and/or selected Js were specified
subsample = iseqlib.filterSampleByGenes(subsample, self.options.vs, self.options.js)
picklefile = os.path.join(globalTempDir, "%s.pickle" %sample.name)
pickle.dump(subsample, gzip.open(picklefile, "wb"))
self.addChildTarget( Analyses(picklefile, self.outdir, self.options) )
