def __init__(self, dProject, parent=None): QtGui.QWidget.__init__(self, parent) self.title = QtGui.QLabel(self.tr("<center><b>SCALE</b></center>")) self.name = "Scale" self.toolID = 1 self.dProject = dProject self.dOutput = dProject['dData'].copy() self.label0 = {} self.doubleSpinBox0 = {} for key in self.dProject['chKeyRS']: self.label0[key] = QtGui.QLabel(key) self.doubleSpinBox0[key] = QtGui.QDoubleSpinBox() self.doubleSpinBox0[key].setRange(0.01, 100.00) self.doubleSpinBox0[key].setValue(1.00) self.doubleSpinBox0[key].setSingleStep(0.01) self.groupBox1 = QtGui.QGroupBox(self.tr('Enter Scale Factor')) vbox = QtGui.QGridLayout() vbox.addWidget(self.label0['RX'], 0, 0) vbox.addWidget(self.doubleSpinBox0['RX'], 0, 1) vbox.addWidget(self.label0['BG'], 1, 0) vbox.addWidget(self.doubleSpinBox0['BG'], 1, 1) vbox.addWidget(self.label0['RXS1'], 2, 0) vbox.addWidget(self.doubleSpinBox0['RXS1'], 2, 1) vbox.addWidget(self.label0['BGS1'], 3, 0) vbox.addWidget(self.doubleSpinBox0['BGS1'], 3, 1) if self.dProject['isSeq2']: vbox.addWidget(self.label0['RXS2'], 4, 0) vbox.addWidget(self.doubleSpinBox0['RXS2'], 4, 1) vbox.addWidget(self.label0['BGS2'], 5, 0) vbox.addWidget(self.doubleSpinBox0['BGS2'], 5, 1) vbox.setContentsMargins(0, 0, 0, 0) self.groupBox1.setLayout(vbox) self.pushButton0 = QtGui.QPushButton('Scale All to BG') self.connect(self.pushButton0, QtCore.SIGNAL("clicked()"), self.autoScale) ### Button Box self.buttonBox = ToolButton() ## Main Layout self.groupBoxROI = GroupBoxROI(self.dProject) mainLayout = QtGui.QVBoxLayout() mainLayout.addWidget(self.title) mainLayout.addWidget(self.groupBox1) mainLayout.addWidget(self.pushButton0) mainLayout.addWidget(self.groupBoxROI.groupBox) mainLayout.addStretch() mainLayout.addWidget(self.buttonBox) self.setLayout(mainLayout) self.isToolApplied = False
def __init__(self, dProject,parent=None): QtGui.QDialog.__init__(self, parent) self.dProject=dProject self.isApplied=False self.title = QtGui.QLabel(self.tr("<center><b>CREATE NEW PROJECT - STEP 1 OF 3</b></center>")) self.name='New Project' label0=QtGui.QLabel('Project Name') self.lineEdit0=QtGui.QLineEdit() self.lineEdit0.setText(self.dProject['name']) self.selectDir0=DlgSelectDir('Directory') self.selectDir0.lineEdit0.setText(self.dProject['dir']) self.radioButton0=QtGui.QRadioButton('One Sequencing Channel') self.radioButton1=QtGui.QRadioButton('Two Sequencing Channels ') if self.dProject['isSeq2']: self.radioButton1.setChecked(True) else: self.radioButton0.setChecked(True) self.groupBox = QtGui.QGroupBox(self.tr("Choose the Project Type")) layout0=QtGui.QVBoxLayout() layout0.addWidget(self.radioButton0) layout0.addWidget(self.radioButton1) self.groupBox.setLayout(layout0) layout0=QtGui.QGridLayout() layout0.addWidget(label0,1,0) layout0.addWidget(self.lineEdit0,1,1) layout0.addWidget(self.selectDir0,2,0,1,2) layout0.addWidget(self.groupBox,3,0,1,2) self.buttonBox=ButtonWizard() self.buttonBox.backButton.setEnabled(False) self.buttonBox.doneButton.setEnabled(False) self.buttonBox.nextButton.setDefault(True) self.connect(self.buttonBox.nextButton,QtCore.SIGNAL("clicked()"),self.clickNext0) mainLayout=QtGui.QVBoxLayout() mainLayout.addWidget(self.title) mainLayout.addLayout(layout0) mainLayout.addStretch() mainLayout.addWidget(self.buttonBox) self.setLayout(mainLayout)
def __init__(self,dProject,dProjRef,parent=None): QtGui.QWidget.__init__(self, parent) self.labelTitle = QtGui.QLabel(self.tr("<center><b>APPLY ALL TOOLS</b></center>")) self.name="Apply All Tools" self.toolID=1 self.dProject=dProject self.dProjOut=deepcopy(dProject) self.dProjRef=deepcopy(dProjRef) label0 = QtGui.QLabel("Start Point") label1 = QtGui.QLabel("End Point") start,end=0,len(self.dProject['dData']['RX']) # findRoi(self.dCurData['RXS']) self.spinBox0 = QtGui.QSpinBox() self.spinBox0.setRange(0, len(self.dProject['dData']['RX'])) self.spinBox0.setValue(start) self.spinBox0.setSingleStep(1) self.spinBox1 = QtGui.QSpinBox() self.spinBox1.setRange(0, len(self.dProject['dData']['RX'])) self.spinBox1.setValue(end) self.spinBox1.setSingleStep(1) layout0=QtGui.QHBoxLayout() layout0.addWidget(label0) layout0.addWidget(self.spinBox0) layout0.addWidget(label1) layout0.addWidget(self.spinBox1) groupBox0=QtGui.QGroupBox('Select Region of Interest') groupBox0.setLayout(layout0) self.checkBox01=QtGui.QCheckBox("Saturation Correction") self.checkBox0=QtGui.QCheckBox("Smoothing Windows Size") self.checkBox1=QtGui.QCheckBox("Mobility Shift") self.checkBox2=QtGui.QCheckBox("Baseline Adjustment Window") self.checkBox3=QtGui.QCheckBox("Signal Decay Correction") self.checkBox4=QtGui.QCheckBox("Signal Alignment") self.checkBox01.setChecked(True) self.checkBox0.setChecked(True) self.checkBox1.setChecked(True) self.checkBox2.setChecked(True) self.checkBox3.setChecked(True) self.checkBox4.setChecked(True) self.spinBox2 = QtGui.QSpinBox() self.spinBox2.setRange(0, 10) self.spinBox2.setValue(1) self.spinBox2.setSingleStep(1) self.spinBox4 = QtGui.QSpinBox() self.spinBox4.setRange(0, 500) self.spinBox4.setValue(60) self.spinBox4.setSingleStep(1) layout1=QtGui.QGridLayout() layout1.addWidget(self.checkBox01,0,0) layout1.addWidget(self.checkBox0,1,0) layout1.addWidget(self.spinBox2,1,1) layout1.addWidget(self.checkBox1,2,0) layout1.addWidget(self.checkBox2,3,0) layout1.addWidget(self.spinBox4,3,1) layout1.addWidget(self.checkBox3,4,0) layout1.addWidget(self.checkBox4,5,0) groupBox1=QtGui.QGroupBox('Select Tools') groupBox1.setLayout(layout1) ### Button Box self.buttonBox = ToolButton() mainLayout = QtGui.QVBoxLayout() mainLayout.addWidget(self.labelTitle) mainLayout.addWidget(groupBox0) mainLayout.addWidget(groupBox1) mainLayout.addStretch() mainLayout.addWidget(self.buttonBox) self.setLayout(mainLayout) self.isToolApplied=False
def __init__(self, dProject,parent=None): QtGui.QWidget.__init__(self, parent) self.title = QtGui.QLabel(self.tr("<center><b>SIGNAL ALIGNMENT</b></center>")) self.name="Signal Alignment" self.toolID=4 self.dProject=dProject self.dOutput=dProject['dData'].copy() self.dProjOut=deepcopy(dProject) self.linkXR,self.linkXS=np.array([]),np.array([]) self.dataR,self.dataS=np.array([]),np.array([]) self.isToolApplied=False ### Group of ComboBoxes label1=QtGui.QLabel("Seq. Channels") self.comboBox0=QtGui.QComboBox() self.comboBox0.setCurrentIndex(0) if self.dProject['isSeq2']: choices0= ['RXS1 - BGS1','RXS2 - BGS2'] else: choices0= ['RXS1 - BGS1'] self.comboBox0.addItems(choices0) gridLayout0 = QtGui.QGridLayout() gridLayout0.addWidget(label1, 0, 0) gridLayout0.addWidget(self.comboBox0, 0, 1) groupBox1=QtGui.QGroupBox('Select Channels to be aligned') groupBox1.setLayout(gridLayout0) self.button0=peakMatchModifyButton() text=self.tr("HINT: When the matched peaks are modified; Key 'A' to add a Peak. Key 'D' to delete a Peak. Key 'Shift' to change position. ") self.hint = hintLabel(text) # self.button0=QtGui.QPushButton('Modify Matched Peaks') # self.button0.setEnabled(False) # # self.hint = QtGui.QLabel(self.tr("HINT: When the matched peaks are modified," # "Press Key 'A' button and click both plots to add a Peak. " # "Press Key 'D' button and click to delete a Peak. " # "Press Key 'Shift' button and select a peak in BGS to change position. " # )) # self.font = QtGui.QFont() # self.font.setPointSize(9) # self.hint.setFont(self.font) # self.hint.setWordWrap(True) ### Button Box self.buttonBox = ToolButton() ## Main Layout mainLayout = QtGui.QVBoxLayout() mainLayout.addWidget( self.title) mainLayout.addWidget(groupBox1) mainLayout.addWidget(self.button0) mainLayout.addWidget(self.hint) mainLayout.addStretch() mainLayout.addWidget(self.buttonBox) self.setLayout(mainLayout) self.isToolAppliedSigAlign=False self.connect(self.comboBox0,QtCore.SIGNAL('currentIndexChanged(int)'), self.comboChanged)
def __init__(self, dProject,parent=None): QtGui.QDialog.__init__(self, parent) self.name='New Project' self.title = QtGui.QLabel(self.tr("<center><b>CREATE NEW PROJECT - STEP 3 OF 3</b></center>")) self.dProject=dProject self.isApplied=False self.label0={} self.comboBox0={} choices0=['Channel 1','Channel 2', 'Channel 3','Channel 4'] for key in self.dProject['chKeyRS']: self.label0[key]=QtGui.QLabel(key) self.comboBox0[key]=QtGui.QComboBox() self.comboBox0[key].addItems(choices0) self.comboBox0[key].setCurrentIndex(self.dProject['chIndex'][key]) choices2=['ddC','ddG', 'ddA', 'ddT'] self.comboBox1={} self.comboBox1['RXS1']=QtGui.QComboBox() self.comboBox1['RXS1'].addItems(choices2) self.comboBox1['BGS1']=QtGui.QComboBox() self.comboBox1['BGS1'].addItems(choices2) if self.dProject['isSeq2']: self.comboBox1['RXS2']=QtGui.QComboBox() self.comboBox1['RXS2'].addItems(choices2) self.comboBox1['BGS2']=QtGui.QComboBox() self.comboBox1['BGS2'].addItems(choices2) self.comboBox1['RXS2'].setCurrentIndex(1) self.comboBox1['BGS2'].setCurrentIndex(1) layout1 = QtGui.QGridLayout() layout1.addWidget(self.label0['RX'], 0, 0) layout1.addWidget(self.comboBox0['RX'], 0, 1) layout1.addWidget(self.label0['RXS1'], 1, 0) layout1.addWidget(self.comboBox0['RXS1'], 1, 1) layout1.addWidget(self.comboBox1['RXS1'], 1, 2) if self.dProject['isSeq2']: layout1.addWidget(self.label0['RXS2'], 2, 0) layout1.addWidget(self.comboBox0['RXS2'], 2, 1) layout1.addWidget(self.comboBox1['RXS2'], 2, 2) groupBox1=QtGui.QGroupBox('Select (+) Reaction Channels') groupBox1.setLayout(layout1) layout2 = QtGui.QGridLayout() layout2.addWidget(self.label0['BG'], 0, 0) layout2.addWidget(self.comboBox0['BG'], 0, 1) layout2.addWidget(self.label0['BGS1'], 1, 0) layout2.addWidget(self.comboBox0['BGS1'], 1, 1) layout2.addWidget(self.comboBox1['BGS1'], 1, 2) if self.dProject['isSeq2']: layout2.addWidget(self.label0['BGS2'], 2, 0) layout2.addWidget(self.comboBox0['BGS2'], 2, 1) layout2.addWidget(self.comboBox1['BGS2'], 2, 2) groupBox2=QtGui.QGroupBox('Select (-) Reaction Channels') groupBox2.setLayout(layout2) self.buttonBox=ButtonWizard() self.buttonBox.nextButton.setText('Apply') self.buttonBox.doneButton.setEnabled(False) self.buttonBox.nextButton.setDefault(True) self.connect(self.buttonBox.backButton,QtCore.SIGNAL("clicked()"),self.clickBack2) self.connect(self.buttonBox.nextButton,QtCore.SIGNAL("clicked()"),self.clickNext2) mainLayout=QtGui.QVBoxLayout() mainLayout.addWidget(self.title) mainLayout.addWidget(groupBox1) mainLayout.addWidget(groupBox2) mainLayout.addStretch() mainLayout.addWidget(self.buttonBox) self.setLayout(mainLayout) self.connect(self.comboBox0['RX'],QtCore.SIGNAL("currentIndexChanged(int)"),self.changeCombo00) self.connect(self.comboBox0['RXS1'],QtCore.SIGNAL("currentIndexChanged(int)"),self.changeCombo01) self.connect(self.comboBox1['RXS1'],QtCore.SIGNAL("currentIndexChanged(int)"),self.changeCombo10) if self.dProject['isSeq2']: self.connect(self.comboBox0['RXS2'],QtCore.SIGNAL("currentIndexChanged(int)"),self.changeCombo02) self.connect(self.comboBox1['RXS2'],QtCore.SIGNAL("currentIndexChanged(int)"),self.changeCombo11)