示例#1
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def test_print_cyjs_graph():
    cja = CyJSAssembler()
    cja.add_statements([st_act, st_act2])
    cja.make_model()
    cyjs_str = cja.print_cyjs_graph()
    # assert output is not empty
    assert len(cyjs_str) > len('{\n "edges": [],\n "nodes": []\n}')
示例#2
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def test_print_cyjs_graph():
    cja = CyJSAssembler()
    cja.add_statements([st_act, st_act2])
    cja.make_model()
    cyjs_str = cja.print_cyjs_graph()
    # assert output is not empty
    assert len(cyjs_str) > len('{\n "edges": [],\n "nodes": []\n}')
示例#3
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def assemble_cyjs():
    """Assemble INDRA Statements and return Cytoscape JS network."""
    if request.method == 'OPTIONS':
        return {}
    response = request.body.read().decode('utf-8')
    body = json.loads(response)
    stmts_json = body.get('statements')
    stmts = stmts_from_json(stmts_json)
    cja = CyJSAssembler()
    cja.add_statements(stmts)
    cja.make_model(grouping=True)
    model_str = cja.print_cyjs_graph()
    return model_str
示例#4
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文件: api.py 项目: johnbachman/indra
def assemble_cyjs():
    """Assemble INDRA Statements and return Cytoscape JS network."""
    if request.method == 'OPTIONS':
        return {}
    response = request.body.read().decode('utf-8')
    body = json.loads(response)
    stmts_json = body.get('statements')
    stmts = stmts_from_json(stmts_json)
    cja = CyJSAssembler()
    cja.add_statements(stmts)
    cja.make_model(grouping=True)
    model_str = cja.print_cyjs_graph()
    return model_str
示例#5
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文件: api.py 项目: steppi/indra
    def post(self):
        """Assemble INDRA Statements and return Cytoscape JS network.

        Parameters
        ----------
        statements : list[indra.statements.Statement.to_json()]
            A list of INDRA Statements to assemble.

        Returns
        -------
        json_model : dict
            Json dictionary containing graph information.
        """
        args = request.json
        stmts_json = args.get('statements')
        stmts = stmts_from_json(stmts_json)
        cja = CyJSAssembler(stmts)
        cja.make_model(grouping=True)
        model_str = cja.print_cyjs_graph()
        return json.loads(model_str)