def process_from_web():
"""Return a processor for the LINCS drug target data.
Returns
-------
LincsProcessor
A LincsProcessor object which contains extracted INDRA Statements
in its statements attribute.
"""
lincs_data = get_drug_target_data()
return LincsProcessor(lincs_data)
def test_process_from_web():
lincs_p = process_from_web()
assert lincs_p is not None
assert lincs_p.statements
data_len = len(get_drug_target_data())
num_stmts = len(lincs_p.statements)
# Note that due to an erroneous entry in the HMS LINCS protein table,
# one Statement is not extracted from the table, hence the condition
# below, which should be kept as long as the error persists
assert num_stmts >= data_len - 1, \
("Did not convert all statements: expected %d, got %d."
% (data_len, num_stmts))
assert all(len(s.evidence) > 0 for s in lincs_p.statements),\
"Some statements lack evidence."
def test_get_drug_target_data():
data_list = get_drug_target_data()
assert len(data_list) > 100, len(data_list)
def test_get_drug_target_data():
data_list = get_drug_target_data()
assert len(data_list) > 100, len(data_list)