try:
beadDensityPlot.genHeatmap(bfmaskPath, bfmaskstatspath, outputdir, plot_title)
except IOError as err:
printtime("Bead Density Plot file error: %s" % err)
except Exception as err:
printtime("Bead Density Plot generation failure: %s" % err)
traceback.print_exc()
if args.do_sigproc:
set_result_status('Beadfind')
status = sigproc.beadfind(
env['beadfindArgs'],
env['libraryKey'],
env['tfKey'],
env['pathToRaw'],
env['SIGPROC_RESULTS'])
add_status("Beadfind", status)
if status != 0:
printtime("ERROR: Beadfind finished with status '%s'" % status)
sys.exit(1)
########################################################
#Make Bead Density Plots #
########################################################
bfmaskPath = os.path.join(env['SIGPROC_RESULTS'],"bfmask.bin")
bfmaskstatspath = os.path.join(env['SIGPROC_RESULTS'],"bfmask.stats")
try:
printtime("Make Bead Density Plots")
try:
beadDensityPlot.genHeatmap(bfmaskPath, bfmaskstatspath, outputdir,
plot_title)
except IOError as err:
printtime("Bead Density Plot file error: %s" % err)
except Exception as err:
printtime("Bead Density Plot generation failure: %s" % err)
traceback.print_exc()
if args.do_sigproc:
set_result_status('Beadfind')
status = sigproc.beadfind(env['beadfindArgs'], env['libraryKey'],
env['tfKey'], env['pathToRaw'],
env['SIGPROC_RESULTS'])
add_status("Beadfind", status)
if status != 0:
printtime("ERROR: Beadfind finished with status '%s'" % status)
sys.exit(1)
########################################################
#Make Bead Density Plots #
########################################################
bfmaskPath = os.path.join(env['SIGPROC_RESULTS'], "bfmask.bin")
bfmaskstatspath = os.path.join(env['SIGPROC_RESULTS'], "bfmask.stats")
try:
upload_analysismetrics(bfmaskstatspath)
update_bfmask_artifacts(bfmaskPath,
else:
block_row_offset = 0
except Exception:
block_col_offset = 0
block_row_offset = 0
return (block_col_offset, block_row_offset)
my_block_offset = get_block_offset()
if args.do_sigproc:
set_result_status("Beadfind")
status = sigproc.beadfind(
env["beadfindArgs"],
env["libraryKey"],
env["tfKey"],
env["pathToRaw"],
env["SIGPROC_RESULTS"],
my_block_offset,
)
add_status("Beadfind", status)
if status != 0:
printtime("ERROR: Beadfind finished with status '%s'" % status)
# write return code into file
try:
f = open(
os.path.join(env["SIGPROC_RESULTS"],
"analysis_return_code.txt"),
"w",
)
f.write(str(status))