newlist = []
for subdir in dirs:
analysis_return_code_file = os.path.join(
subdir, env["SIGPROC_RESULTS"], "analysis_return_code.txt")
if os.path.exists(analysis_return_code_file):
with open(analysis_return_code_file, "r") as f:
text = f.read()
if "0" == text:
newlist.append(subdir)
dirs = newlist
except Exception:
traceback.print_exc()
try:
sigproc.mergeAvgNukeTraces(dirs, env["SIGPROC_RESULTS"],
env["libraryKey"], "Library Beads")
except Exception:
printtime(
"Warning: mergeAvgNukeTraces '%s' 'Library Beads' failed" %
env["libraryKey"])
try:
sigproc.mergeAvgNukeTraces(dirs, env["SIGPROC_RESULTS"],
env["tfKey"], "Test Fragment Beads")
except Exception:
printtime(
"Warning: mergeAvgNukeTraces '%s' 'Test Fragment Beads' failed"
% env["tfKey"])
try:
sigproc.generate_raw_data_traces(
newlist = []
for subdir in dirs:
analysis_return_code_file = os.path.join(subdir, env['SIGPROC_RESULTS'], "analysis_return_code.txt")
if os.path.exists(analysis_return_code_file):
with open(analysis_return_code_file, 'r') as f:
text = f.read()
if '0' == text:
newlist.append(subdir)
dirs = newlist
except:
traceback.print_exc()
try:
sigproc.mergeAvgNukeTraces(dirs, env['SIGPROC_RESULTS'], env['libraryKey'], 'Library Beads')
except:
printtime("Warning: mergeAvgNukeTraces '%s' 'Library Beads' failed" % env['libraryKey'])
try:
sigproc.mergeAvgNukeTraces(dirs, env['SIGPROC_RESULTS'], env['tfKey'], 'Test Fragment Beads')
except:
printtime("Warning: mergeAvgNukeTraces '%s' 'Test Fragment Beads' failed" % env['tfKey'])
try:
sigproc.generate_raw_data_traces(
env['libraryKey'],
env['tfKey'],
env['flowOrder'],
env['SIGPROC_RESULTS'])
except:
newlist = []
for subdir in dirs:
analysis_return_code_file = os.path.join(
subdir, env['SIGPROC_RESULTS'], "analysis_return_code.txt")
if os.path.exists(analysis_return_code_file):
with open(analysis_return_code_file, 'r') as f:
text = f.read()
if '0' == text:
newlist.append(subdir)
dirs = newlist
except:
traceback.print_exc()
try:
sigproc.mergeAvgNukeTraces(dirs, env['SIGPROC_RESULTS'], env['libraryKey'], 'Library Beads')
except:
printtime("Warning: mergeAvgNukeTraces '%s' 'Library Beads' failed" % env['libraryKey'])
try:
sigproc.mergeAvgNukeTraces(dirs, env['SIGPROC_RESULTS'], env['tfKey'], 'Test Fragment Beads')
except:
printtime("Warning: mergeAvgNukeTraces '%s' 'Test Fragment Beads' failed" % env['tfKey'])
try:
sigproc.generate_raw_data_traces(
env['libraryKey'],
env['tfKey'],
env['flowOrder'],
env['SIGPROC_RESULTS'])
except: