def learn(self, n_trajectories: int) -> None:
'''Learn an optimal policy given an environment.'''
# Simulate a series of trajectories in the environment.
trajectories = self.simulate_n_trajectories(n_trajectories)
# Compile the necessary information for the TRPO update.
from ipdb import set_trace as debug
debug() # VALIDATE STATES INDEXING.
states = trajectories[:, :, 0]
actions = trajectories[:, :, 1]
action_vectors = trajectories[:, :, 2]
rewards = trajectories[:, :, 3]
# TRPO update!
theta = self.flatten_theta()
# Compute the policy gradient -> Fx = g.
g = self.session.run(self.policy_gradient,
feed_dict={
self.action_vectors: action_vectors,
self.actions: actions,
self.states: states
})
# Evaluate the natural gradient using conjugate gradient descent.
natural_gradient = conjugate_gradient_descent(fisher_vp, g)
def image_path_to_image_id(path_to_image):
"""Convert the path to an image to a proper image_id in the new style."""
path_list = path_to_image.split("/")
date = path_list[-3]
site = path_list[-2]
image_number = path_list[-1].replace(".JPG", "")
# Extract name of site.
try:
site_name = re.search(r"([\w\.\s]+)", site)[1].strip()
site_name = site_name.replace(".", "").replace(" ", "_").lower()
site_name = SITE_NAME_MAPPING[site_name]
except:
print("Cannot extract site name.")
if site_name not in skip_sites:
print(site_name)
debug()
else:
return None
# Extract altitude.
try:
altitude = re.search(r"\((\d+)\)", site)[1]
except:
print("Cannot extract site altitude.")
return None
# Extract date.
match = re.search(DATE_REGEX, date)
if match is None:
print("Cannot extract data.")
return None
else:
year = match[1]
month = match[2]
day = match[3]
image_id = f"{year}-{month}-{day}-{site_name}-{altitude}-{image_number.replace('DJI', 'IMG')}"
return image_id
def main():
# create the environment
env = gym.make('FrozenLake-v0')
# uncomment next line to try the deterministic version
# env = gym.make('Deterministic-4x4-FrozenLake-v0')
print_env_info(env)
print_model_info(env, 0, lake_env.DOWN)
print_model_info(env, 1, lake_env.DOWN)
print_model_info(env, 14, lake_env.RIGHT)
# input('Hit enter to run a random policy...')
gamma = 0.9
policy, i = rl.value_iteration(env, gamma)
print(policy)
policy, _, i, i = rl.policy_iteration(env, gamma)
print(policy)
debug()
# total_reward, num_steps = run_policy(env, policy)
# debug()
total_reward, num_steps = run_random_policy(env)
print('Agent received total reward of: %f' % total_reward)
print('Agent took %d steps' % num_steps)
def _upsert(cls, resource_id=None):
'''Upsert a resource. Responds to a patch to the URL.'''
debug()
params = assemble_params(cls, 'upsert', resource_id, request)
data = deserialize(request.json)
# Attempt to find the resource using query.
matches = cls.find_where(data['query'])
if len(matches) == 0: # no matches
cls._obj = cls.create(data)
params['resp'] = cls._to_response(cls._obj._doc)
else:
params['resp'] = cls._to_response(matches[0])
return (params['resp'], params['status_code'], {})
def outline_to_lines(asker, root):
debug()
result = asker.ask(fields.get_field(cached_lines(), root)).answer
if result is not None:
return asker.reply(answer=result)
base_headline = asker.ask(fields.get_field(headline(), root)).firm_answer
root = asker.refresh(root)
prefix = "* " if convert.check_hard(asker, is_pointer(), root) else " "
full_headline = strings.string_concat(T.from_str(prefix), base_headline)
root = asker.refresh(root)
children = asker.ask(fields.get_field(visible_children(), root)).firm_answer
body = empty_lines()
for child in lists.iterator(asker, children):
section = asker.ask(outline_to_lines(child)).firm_answer
body = concat_lines(body, section)
result = concat_lines(one_line(full_headline), indent_lines(body))
asker.update(updates.set_field(cached_lines(), result), root)
return asker.reply(answer=result)
def extract_tiles_from_image(
image,
annotations,
tile_size=128,
target_species=None,
include_target=True,
max_nb_tiles=2000,
):
"""Pull the given annotation from the image."""
labels = []
tiles = np.array([])
for annotation in annotations:
if "plant" not in annotation.keys():
continue
if include_target:
if plant_to_id[annotation["plant"]] != target_species:
continue
else: # require this species
if plant_to_id[annotation["plant"]] == target_species:
continue
# Extract tiles, if we're still here.
if target_species < 0:
debug()
col, row = annotation["col"], annotation["row"]
col_, row_ = (
col * 4000 / annotation["imageWidth"],
row * 3000 / annotation["imageHeight"],
)
tiles_ = np.array(create_rotated_pics(image, row_, col_, tile_size, 25))
if tiles.shape[0] > 0:
tiles = np.vstack((tiles, tiles_))
else:
tiles = tiles_
# Only return max numbers of tiles.
if tiles.shape[0] > max_nb_tiles:
break
return tiles
def single_path(self) -> None:
'''Perform a single path rollout.'''
# Randomly sample the initial state.
state = self.env.reset()
from ipdb import set_trace as debug
debug() # LOOK AT THE STATE OBJECT.
done = False
# Stores (S_t, A_(t-1), AV_(t-1), R_t).
history = [(state, -1, -1)]
# Run a sample trajectory.
while not done:
# Evaluate the policy to find an action to take - A_(t-1).
action_vectors, action = self.act(state)
# Take the action!
state, reward, done, info = self.env.step(action)
history.append((state, action, action_vectors, reward))
return np.array(history)
def smart_batch(scientific_name,
tile_size=128,
nb_tiles_per_class=1000,
samples_per_tile=10):
"""Generate a smart batch that balances the target against a mix of its confusors."""
# Extract tiles associated with the primary target.
print("> Extracting targets.")
X, y = extract_smart_training_tiles(
scientific_name,
label=1,
tile_size=tile_size,
nb_tiles_per_class=nb_tiles_per_class,
samples_per_tile=samples_per_tile,
)
# Now extract tiles from each of the confusing classes.
confusors = CONFUSORS[scientific_name]
nb_tiles_per_confusor = int(nb_tiles_per_class / len(confusors))
print("> Extracting confusors.")
for confusor in confusors:
X_, y_ = extract_smart_training_tiles(
confusor,
label=0,
tile_size=tile_size,
nb_tiles_per_class=nb_tiles_per_confusor,
samples_per_tile=samples_per_tile,
)
if X_ is not None:
try:
X = np.vstack((X, X_))
y = np.hstack((y, y_))
except:
debug()
idx = np.arange(X.shape[0])
np.random.shuffle(idx)
X = X[idx, :]
y = y[idx]
return X, y
def plot_output_q2(ys: list = [], ts: list = [], rs: list = []) -> None:
'''Plot the output for question 2.'''
plt.figure()
lines = []
debug()
labels = [
'Susceptible Population', 'Infected Population', 'Recovered Population'
]
titles = [fr'$\beta$ = {b[1]}' for i, b in enumerate(rs) if i % 3 == 0]
cols = [fr'$X_0$ = {b[2]}' for b in rs]
for i, tup in enumerate(zip(ys, ts, rs)):
y, t, rb = tup
S, I, R = zip(*y)
S, I, R = np.array(S), np.array(I), np.array(R)
plt.subplot(3, 3, i + 1)
for var, label in zip([S, I, R], labels):
line, = plt.plot(t, var)
lines.append(line)
if i < 3:
plt.title(titles[i])
if i % 3 == 0:
plt.ylabel(cols[int(i / 3)])
# plt.xlabel('Time')
# plt.ylabel('Compartments')
# plt.title(fr'$R_0$ = {rb[0]}, $\beta$ = {rb[1]}')
plt.grid()
plt.subplots_adjust(hspace=0.5)
plt.figlegend((lines[0], lines[1], lines[2]), labels)
plt.show()
def reintroduce_modifier(asker, property, update, input, output):
result = translator.dispatch(asker, property, update, input, output)
if result is None:
debug()
return result
plt.ylabel('Total Yield (1,000 $)')
plt.title('Price Of Oats vs. Total Yield')
plt.grid()
plt.subplot(3, 1, 2)
corn, wheat, oats = zip(*xopt.values())
plt.plot(oat_price_range, corn, label='Corn')
plt.plot(oat_price_range, wheat, label='Wheat')
plt.plot(oat_price_range, oats, label='Oats')
plt.xlabel('Price of Oats ($/acre)')
plt.ylabel('Crops Planted (acre)')
plt.legend(loc='lower left')
plt.title('Price of Oats vs. Crops Planted')
plt.grid()
plt.subplot(3, 1, 3)
debug()
water, labor, land = zip(*lamb.values())
plt.plot(oat_price_range, water, label='Water')
plt.plot(oat_price_range, labor, label='Labor')
plt.plot(oat_price_range, land, label='Land')
plt.legend(loc='lower left')
plt.title('Price of Oats vs. Value of Constraints')
plt.xlabel('Price of Oats ($/acre)')
plt.ylabel('Shadow Price ($/unit)')
plt.grid()
plt.subplots_adjust(hspace=0.5)
plt.show()
def ask(self, Q, handler=None, **kwargs):
response = self.ask_func(Q, parent=self)
if getattr(self, "slow", False):
debug()
return response.set(self.process_response(response.value, Q=Q, handler=handler))
for tag in training_tags:
try:
tag_counts[tag] += 1
except:
tag_counts[tag] = 1
for ngram in nltk.ngrams(training_words, 2):
training_word_ngrams.append(ngram)
for ngram in nltk.ngrams(training_tags, 2):
training_tag_ngrams.append(ngram)
for ngram in training_tag_ngrams:
try:
ngram_tag_counts[ngram] += 1
except:
ngram_tag_counts[ngram] = 1
tag_transition_probs = {}
for tag in tag_counts:
tag_transition_probs[tag] = {}
for ngram in ngram_tag_counts:
if ngram[0] != tag:
continue
tag_transition_probs[tag][ngram] = ngram_tag_counts[ngram] / tag_counts[ngram[0]]
debug()
def map_summaries():
"""Return the map summary information."""
flights = []
years = glob(f"{ARGOS_ROOT}/*")
maps = []
for year in years:
months = sorted(glob(f"{year}/*"))
# print(year)
# print(months)
for month in months:
days = sorted(glob(f"{month}/*"))
for day in days:
sites = sorted(glob(f"{day}/*"))
for site in sites:
altitudes = sorted(glob(f"{site}/*"))
for altitude in altitudes:
if altitude.split("/")[-1] != "obliques":
images = sorted(glob(f"{altitude}/images/*.JPG"))
images.sort(key=os.path.getmtime)
nb_images = len(images)
if nb_images > 0: # if no images, just why?
first_meta = extract_info(images[0])
last_meta = extract_info(images[-1])
start = first_meta["date_time"]
try:
datetime_obj = datetime.strptime(
start, "%Y:%m:%d %H:%M:%S"
)
except:
debug()
datetime_str = datetime_obj.strftime("%d %b %Y")
smalldate = datetime_obj.strftime("%Y-%m-%d")
time_str = datetime_obj.strftime("%I-%M%p")
alt = altitude.split("/")[-1]
sitename = site.split("/")[-1]
year_ = year.split("/")[-1]
month_ = month.split("/")[-1]
day_ = day.split("/")[-1]
end = last_meta["date_time"]
path_to_map = f"{altitude}/maps/map_small.jpg"
path_to_geomap = f"{altitude}/maps/map.tif"
path_to_images = f"{altitude}/images"
map_id = f"{year_}-{month_}-{day_}-{sitename}-{alt}"
# Get map sizes.
if len(glob(path_to_geomap)) == 0:
continue
# ds = gdal.Open(path_to_geomap)
# geo_rows = ds.RasterYSize
# geo_cols = ds.RasterXSize
# small_map = plt.imread(path_to_map)
# small_rows, small_cols, _ = small_map.shape
else:
continue # No images? Don't return this map.
if len(glob(f"{altitude}/maps/map.tif")) > 0:
maps.append(
{
"map_id": map_id,
"year": year_,
"month": month_,
"day": day_,
"site": sitename,
"altitude": alt,
"nb_images": nb_images,
# "geo_rows": geo_rows,
# "geo_cols": geo_cols,
# "small_rows": small_rows,
# "small_cols": small_cols,
# "lat": f"{first_meta['img_lat']:.4f}",
# "lon": f"{first_meta['img_lon']:.4f}",
"start": start,
"end": end,
"time": time_str.replace("-", ":"),
"datetime": datetime_str,
"path_to_geomap": "/".join(
path_to_geomap.split("/")[-7:]
),
"path_to_map": "/".join(
path_to_map.split("/")[-7:]
),
"path_to_images": "/".join(
path_to_images.split("/")[-6:]
),
}
)
maps = sorted(maps, key=lambda x: x["start"])
return maps